LOC110502487 (LOC106607391)


Basic Information

Item Value
gene id LOC110502487
gene name LOC106607391
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 25131256 ~ 25192325 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580534.2
CACTTTAATTTCAATACGTAGGCGTGTTTACAGGAAAAACAGAGAATCAGAGAAAATTAATATCATGGAACGTTCAGCAGCTATCATCATTACGAATTGAGGGATGTAGATGATGCGCCGCTCTGCAGTAATGCTCACTCCTACCTGCCTGATGTAGATTCATGTAGAATATGCGCCCCGTGGGACGGACCAGGCCTACTTCGCTCATAGCGACTTTTGTACAACAGCATCATTGGCCGGGCAGCAAGATTAATATTTTCGTAAGAGGTTTGCGGCAAGGAAGATAGTCTTCGTTTTCATATCCACTTCTCATTAACACCAGCGAATAAAAACACAGTTTTTTTTCTCAGCCAATAAACCATATAATTCATCAAGACGCTGCGAGATCACATTTCCTACATCTCTACGGTGGTATGTGTTTATGGAGATCACTGAGCTCGAGACGACTTTTAAACCGTGTAATGACTTGAAACTTGGAAGTCCCCTGAAACCCAGCCCACTGGACCTTAGCTACAGGAACAAAGTGTGTCCTGATCACAACCAATACTTCCCCGGCCAGTCCCACCAGACCCTGCTCCTCTGAGACTATGTGAATGTGGACTGTGTTATGGGTACAGAACCCCAAGGGCCCAGTCAGGAAGAGAATCAGACTTTCAGGTTGCTATGGACTATTGGAACAACTCCTGAATCCTGTCAGCTCTGCTTGGAACTTCACAATGGTGTTGTTTCTGACTGCAACTATAATAACCTTGAATAACTCCTCTCATGAGAACCAGACTACAGAAAACCCCACCCCCCAGGGTGCCCATGTACTTTCCTACATGCTGGtcgtctctcttcttctcatcaTCATCGTTCTCCCGACAGTATACTTCCTAAGGTTTAGAAACCACAGGAAGGCTCTTGTCACCTCAGTTGATAAGAAGATTCCAAATGGCTTCTTGGAAGATCAAGgAGAGCAGACAGTGGTCCTCCTCCCACGCTCCCCATCTCCATCCAAGCGTTACTTCCCCATCCCCCTGGACTCGCTAGAAGACCAGTTCCGGATATGCTCGGCAGACGACTGCAAGCTTTTCAGAGAGGAGTTCAATTCACTGCCCTGTGGCTACCAGCACAGCTCCTTTGAGGAGGCTAGCAGGGTGATCAACAGGGACAAGAACAGATATCCAAACATCCTACCATATGACCATTCTAGAGTGTTGTTAACTCAAATCGATGGTTATTCTTGTACGGACTACATAAATGCCTCATACATAGATGGTTATAAAGAGAAGAACAAATTCATTGCAGCTCAAGGCCCAATGCACGACACTGTGGCAGACTTTTGGCGGATGGTTTGGGAACAGAAGACTGCTACTATAGTGATGCTCACTAAcctgaaagagagaaaagagGACAAGTGTTACCAGTACTGGCCAGACCAGGGCTGTTGGATGTATGGGAATATGAGGGTGGCAGCAGAGgactttactgtactggtggacTACACCATGCGCAAGTTCTGTGTACAATATCAGGGGAGTGATGGCCCCAGGGCTCCCTGCCTGGTCACCCAGCTCCACTTCACCAACTGGCCTGACTTTGGGGTACCCTTCTCCCCCATTGGCATGCTCAAGTTCCTCAAGAAGGTGAAGACGGTCAACCCGTCTTATGCAGGACCCATCGTGGTGCACTGCAGTGCTGGTGTAGGAAGGACTGGAACATTTATCGTCATAGACGCCATGATTGACATGATGCATGTAGAGCAGAGGCTGGATGTCTTTGGGTTTGTGACCAGAATACGGGAGCAGCGCTCTCAACTCGTCCAGACTGATATGCAGTACTCATTCATCTATCAGGCTCTGTTGGAGTATTATCTATATGGTGACACAGAGCTGGATGTGTCCTCTCTGGAAGGCCATCTGCAGAAGCTCCACAATACCAGAGCACCCCTCGAAAGGCTGGGCCTAGAAGAAGAGTTCAGGAAACTGACCAATGTACGCATAATGAAGGAGAACATGAGGACCGGAAACCTTCCTGCCAACATGAAGAAGAACCGTGTGCTTCAGATCATTCCATATGACTTCAACCGGGTTATATTGTCAATGAAAAGGGGCCAAGAGTTCACGGACTACATCAATGCATCATTTATTGATGGCTACAGACAGAAGGACTACTTCATTGCTACCCAAGGTCCTCTGTCCCACACGGTGGAGGACTTCTGGAGGATGGTGTGGGAGTACAGGTGTCACTCTATTGTCATGCTCACTGAACTCAAGGAGAGGGAACAGGACAAATGTTTCCAGTACTGGCCAGCAGAGGGCACTGCGACATTTGAAGACTACACTTTGGAGCTGAAGGGGGATGCCCTATGTGACACTTTCACTCTGAAGGACATGGTGCTCACATATGGACCAGAAAAACAGTCAAGGCATGTCCGACACTTTCATTTCCACGGCTGGCCTGAGATCGGAATACCGGCAGAGGGAAAGGGAATGATCGACATCATTGCTTCAGTGCAGAGACAGCAACAACAGTCTGGAAACCACCCTATCATAGTACATTGCAGTGCTGGTGCGGGTCGGACTGGGACATTCATCGCCCTGAGTAATATTCTGGAGCGGGTGAAAGCCGAGGGCCTACTGGACGTGTTTCAGACAGTCAAGAGTTTACGCATGAAGAGACCACACATGGTTCAGACTGTGGAACAATATGACTTCTGCTACAGAGTGGTTCAAGATTTTGTTGACATTTTCTCAGACTATGCCAACTTCAAATGACAATATCTGCTACATATACCCATGTATTTTTCCGACAGGCATATACCATTTTGTTAGATCGCTCTTTTTACGCTTTGCACTTAAACACAGTACTTAAACTTATTGTtcaatattgtaatatatttgtttgtatctctgtctgtttttttgttaGCTCGTTCAAAACAGCCCAAAAGAAAATGAAATATTATGTCTATTTAGTCATGGACTTTTCAACTAGTTTTGTGTCCTGAGTATTTGGATGTCAAACGTTTTGAATTGAAAACCTAAGACCATGTGATCAAAAATGGGAATGAATTGTTTATTATGTTAACATTATGTATATAcgctgagtgtataaaacattaaggacCAGCTTCCTGATATTGAGgtgcacctggtcagtctatgtcatggaaagtgcaggtgtccttaatgttttgtacactcagtgtatattgattAACTTATGCATATAATCTGTATCTATTTATATAATGTAGAATTTAATGTACATTTTGAGTATGTTAAAAACATTACCACAAGATTGCCTTTCGTTGCCTGTGGTCTGTACCATAGCTGTGGCACATACTGTGGAAGTCCACAGattggacaaaaaaaaaacagctgttgTGAAGATACACAACCTGCCATAATAGTTTGTCATTGTATTACTGACCTTACAAGTGACTTAAGTGCCATTTAATATTTGCTGTGTATGATGTTTAT

Function

NR:

description
receptor-type tyrosine-protein phosphatase epsilon-like isoform X1

GO: NA

KEGG:

id description
K18033 PTPRE; receptor-type tyrosine-protein phosphatase epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580534.2 True 3467 mRNA 0.45 21 25131256 25192325

Neighbor

gene id symbol gene type direction distance location
gnrh1 gnrh1 coding downstream 2305 25127611 ~ 25128951 (-)
LOC118943844 NA coding downstream 285052 24839909 ~ 24846204 (-)
LOC110502483 LOC106607298 coding downstream 317898 24806973 ~ 24813358 (-)
LOC110502481 smndc1 coding downstream 364486 24754565 ~ 24766770 (-)
LOC110502477 LOC106608714 coding downstream 500675 24520546 ~ 24630581 (-)
LOC110503059 NA coding upstream 225039 25417364 ~ 25418599 (-)
LOC110503093 NA coding upstream 510931 25703256 ~ 25704420 (-)
LOC110503094 edrf1 coding upstream 536163 25728488 ~ 25735408 (-)
LOC110502495 zranb1 coding upstream 692631 25884956 ~ 25932474 (-)
LOC110502496 fam175b coding upstream 747401 25939726 ~ 25947986 (-)
G1846446 NA non-coding downstream 296 25129602 ~ 25130960 (-)
G1846483 NA non-coding downstream 6146 25124777 ~ 25125110 (-)
G1846287 NA non-coding downstream 105117 25025909 ~ 25026139 (-)
G1846283 NA non-coding downstream 107745 25023299 ~ 25023511 (-)
G1846180 NA non-coding downstream 182477 24948580 ~ 24948779 (-)
G1846518 NA non-coding upstream 3337 25195662 ~ 25195874 (-)
G1846519 NA non-coding upstream 4559 25196884 ~ 25197084 (-)
G1846520 NA non-coding upstream 5436 25197761 ~ 25197973 (-)
G1846525 NA non-coding upstream 8471 25200796 ~ 25201140 (-)
G1846716 NA non-coding upstream 28847 25221172 ~ 25258790 (-)
LOC110502462 LOC106607169 other downstream 1785485 23344353 ~ 23358461 (-)
G1843946 NA other downstream 1897833 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other downstream 1912986 23213905 ~ 23218749 (-)
G1841959 NA other downstream 3759457 21345514 ~ 21371799 (-)
G1841694 NA other downstream 4187641 20943307 ~ 20943615 (-)
G1846858 NA other upstream 247482 25439807 ~ 25440387 (-)
G1850441 NA other upstream 2882600 28074925 ~ 28078251 (-)
LOC110502553 NA other upstream 3732414 28919846 ~ 28932600 (-)
LOC110502574 LOC106608078 other upstream 5959284 31151609 ~ 31239202 (-)
G1854905 NA other upstream 6025272 31217597 ~ 31218171 (-)

Expression


Co-expression Network