LOC110502488 (LOC106607400)


Basic Information

Item Value
gene id LOC110502488
gene name LOC106607400
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 25379373 ~ 25408777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580538.2
GGGATTGCAGCAGCATGTACTGTACGAGTGCCTATTGCCGGTGAGTGTAGGAGCGGCAGCGGACGAGTGTCAGTGATGCTTGAatgaggtgaaagagagagagagagagagagtcagacagagagagagaagtagggagGACTTCATTGTGGACCTTACGGGGTTGGAGGCCGTTTTTTTCTATCCTGAACCTTTGCCGATGTGCCACAACTATCCAGCTGTCACTGCAGTGGCTGTCTCTTTGGTACCCTATCCTCTCTCTGGACGGAGCTCTCTATGCCACTACATGAATGGATATGCACCAGCTCAGTGGGAGATCTCTGCTTTCTCATCCTTTGCTCCACTGATTTGTTTCTCAAGaAACCATGGTGAGCAAGGAGAGCAGCAGGGTCGTGCTCTCCAACTCAGAGTCAGATTCAGAGACAGGCCCGTCACATAGCTTGGAGGCACAATACGGTCCTGACGGCAAACAGCAGGTGAAGAAGAGGAACAAAGCCTTACAAGTCCGCTTCAAGGATATCTGTGACGCCCAGAACGAGCAGCGGGCAGGGGGGCGAGGAGCAAGGTCCATTTCCTGTAAAGTGGCATACAGGAAGTACATGGCGATGCCTGCGCGGCGCTCCATCCCCAATGTGACTAAGAGCACGGGTGTTCAGACGTCACCAGACCTTACGAAACACTACCAGACTTTCCCCTTCGAGCGAAAGAAAGGACACACCATCAAACACACGGCCTTGGTAGAGGACTACAAGGGTCAAAACAATGGGTTTTTGAGTGACTTGAAAGGTCAGGACGAGGCAGTGAGTTTAGAGGAGTGCTCGTCATCTCAGGGTGCAGGGAAGCATGTGCGGCAGACGCAGGCACTGCTCCACCACAGGGACGACAGCAGTGGCACAGAGGATCTGTTATCCGGTGCCAACTGCGTAGACAGGCGTGAATGCCGGGACCCTTCTCTCCTCACAAAGGACACAGAGTGCTTTGCAAATGACCCAACTCCCATGGGAGAGCCGAAGAACCAGGCTTCTGGCGTGAGAACCAAACACAAAGTATTATCCAAAGTGGACACGATGGGTGCCAACCCTTCCGCCAAACGCCAGTTGGCAAACTGCGAGGAACTCTTACAGGACACAAGATTAAAGGTCACAAGTCCTGTTGCCTGGAACTCCCTGACGCAAGTGGAAAGTCTAGGCCTAGGGAGTCCGTCGGTGCACCACAAACGCAAGAAGGCCATGCAGCCCAATGGACAACAGTCTCAGACACTGCCCCACCCCCACAGTGCTGGCTGCTCTGTGGTCAAGGTAAAGGCACATCAGTACCAATCAGGGACTTTACCAGCCCCAAGGAAAACACAGTCGGGCCTGGAGGATCAGGCTTGTCCTCCAGGACGGCAGGGTGCCTGTCAGCAGATAGTGCCCTTACCTGGGAATGGGGATATTAAGGGAAAGCTCCAGGCCATGGAAAACCTCATCAGCTCCAGTCAGGAGACCATCAAGGTTTTACTGGGGGTCATCCAAGAGCTGGAGAAGGGCGAGGCTCAAAGAGAAGGGCTTTCCTACCGAACGGGACAGGACACAGCCAACTGTGACACGTGTCGAAACAGTGCCTGCATCATTTATAGtgTGGAGCTGGACTTCAAGCAGCAGGAGGACAAGTTACAGCCCCTGATTAAGAGACTGTGCCCCTTGGACAACTCTCAATACCCTGCTCTGCCTTACCCCCACGAGGTGTTCACTTCAACCCCCAAACGCAAGTCCAAGACAGAGTCCAAAAAGCATGGTCGCTGGAAACTCTGGTTCCTTTAACTTAGGGAAGATCTTGGCTTTTGGAATGGACTTTTGGATCTGTTTTTACACATCTATCTTCCCTCAAAGGGATCTATCACAACAGTAGATGTTCTGCTCCAGGGAACGGATAATCTGATAACAGTAAATCATCTAAATCAGGATTCTAAGTTTGAACTGCACTAGAAATCAATgggggattttttttaaacaatcttAGCTCTGCCAAGCCTTCAGTTTTTTGTTCAAAACCGGAGAAGGTCAACTTATACCCTGGCTAAAGGTTAGCAGAACTACATGGTGAGACTGGATATATTTTTGTCATCATGAAATGTAGCCCACAAATATGAAGATGGATATTATTTATTTACCGGGCAAATGTTTCTCTcactttttaaaaatgatttcCAATGGCACACCTTTTTGGTCTCTGCTTGACCAGAAGAGGAATCACCATGTGGAAGGCCTGTTTCTCTAAAAATATACTTTAATCGTACATCAGCCTGTTGGAAAAGCACAAACATTTGGAGACTGAGAACATCATGGAAGAAgaagttatatacagtacattacactatATTAGTGAACCGACTCTACATGAACCCTTCTTGCCTCTTCTCTCCAGTCTTGAGAGAGCCCAgttactctctctccccttcctttccctttgtctctttccctttttctgtctgtctcgctctctctctttctctttctctgcacacagacatgcacttcAGGAGTATGTAAAGGAAGATTGCGATATATGGGATCCTCGACTGCTTTGTTTTTTAGAAACAGGATATAGTCAAGGTTATAGTTCTGTTCCAATAGCTGTTCTAATCCATCAATGTGCAGAAATAGGGGTTGAATCCAAGATTTGACTATTGCATATAGAAAAAAATATAGACTTATTTTAACATATTAAAGTTTGTTGATTATCTTATATAACATATTAACGTTTCTTATTACTGTGTTATTCAACATGCAGCAGACTATTTTATGAAAATATGATTGAATTTCAGTTGAAAAAGTAAGCATGGTTTTGACACTTCTTTATCAATTCACATGCACAAAGCTGTCATTGCCTTTCACTTACACACAGGTTAACATCTCACTAACTTACTCTAACCCACAGAAAGGAAATGTACTGTAAGGACAGGACGAAATGCAACACTATTCTCTCTGGAATATGCATttcacattataaactgggtggttcgagccctgaatgctgattggctgacagccgtggtatatcagaccgtataccacggttatgacaaagcatttatttttactgctcttattaggttggtaaccagtttataatagcaataaggcacctcggggctTCGTGGTTTATGGCCAATGTACCACGGCTAagtgctgtatccaggcactccgctttgtgttgtgtgtaaagaacagcccttagccgtggtataatggccttattgcttaattctaACTCACTTGGCTCAACTGATCATCATCACAGACCATATGGTCCTTCACGTAGTGCCATAATTCTGCAACTCACCAATAATTTTGATTAACATTGATCAGCACCTAACACCTTTGCTTACTCTCTCCTATATGATTACATTAGGGGTGGAATCAAGTCACGACCCAGACGTAGCAATCCATGCACTGAACTTACAACAATAAAGAAGGGCTATTTACAGTATACATAAGCATGTAGGGTATTCAATCTTTATCTTTGACGAATAGTGACTTTGGATCAGATGGATTCATTTGATGAAGCAACTTAAACCATCCACTTATTGCACCTAATATTTATAGATAATCATTTAAATCTCACATAAACAATGTCACACTGACAGCAAGTGATTCAATCACACATTTGATCTTCTTGGCTGGGTTACCAGGTCCTTCAATATTACTGTACAGATGGAGgaacttaatttgagccagtttgccacTGAAAGAAAATACACCTGCAGAAATAGGCAATGTGAATGTGGAATataattaattacattttttttgtaggggttgatagatttttcattagggcaaatcaagtatgacattttaaagtggaaattacaaactttagaagccattTTAAACATCAAATACACAAGTGTACATTTCTTGCTGTGCAGGAAAGTTATCCTCAACAAaacagtgatcaaatgaagatcctacatctgtagcataTTGAAGGACACCTTAAGGAAGTGCAATTCATTGATTTGCAATATTATGCATTTTGTACTGTTTTTACCTTAAAACAAATGCATTTTCAATAAAACCAA
>TU2114047
TGTTGATTATCTTATATAACATATTAACGTTTCTTATTACTGTGTTATTCAACATGCAGCAGACTATTTTATGAAAATATGATTGAATTTCAGTTGAAAAAGTAAGCATGGTTTTGACACTTCTTTATCAATTCACATGCACAAAGCTGTCATTGCCTTTCACTTACACACAGGTTAACATCTCACTAACTTACTCTAACCCACAGAAAGGAAATGTACTGTAAGGACAGGACGAAATGCAACACTATTCTCTCTGGAATATGCATttcacattataaactgggtggttcgagccctgaatgctgattggctgacagccgtggtatatcagaccgtataccacggttatgacaaagcatttatttttactgctcttattaggttggtaaccagtttataatagcaataaggcacctcggggctccgtggtataatggccttattgcttaattctaACTCACTTGGCTCAACTGATCATCATCACAGACCATATGGTCCTTCACGTAGTGCCATAATTCTGCAACTCACCAATAATTTTGATTAACATTGATCAGCACCTAACACCTTTGCTTACTCTCTCCTATATGATTACATTAGGGGTGGAATCAAGTCACGACCCAGACGTAGCAATCCATGCACTGAACTTACAACAATAAAGAAGGGCTATTTACAGTATACATAAGCATGTAGGGTATTCAATCTTTATCTTTGACGAATAGTGACTTTGGATCAGATGGATTCATTTGATGAAGCAACTTAAACCATCCACTTATTGCACCTAATATTTATAGATAATCATTTAAATCTCACATAAACAATGTCACACTGACAGCAAGTGATTCAATCACACATTTGATCTTCTTGGCTGGGTTACCAGGTCCTTCAATATTACTGTACAGATGGAGgaacttaatttgagccagtttgccacTGAAAGAAAATACACCTGCAGAAATAGGCAATGTGAATGTGGAATataattaattacattttttttgtaggggttgatagatttttcattagggcaaatcaagtatgacattttaaagtggaaattacaaactttagaagccattTTAAACATCAAATACACAAGTGTACATTTCTTGCTGTGCAGGAAAGTTATCCTCAACAAaacagtgatcaaatgaagatcctacatctgtagcataTTGAAGGACAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580538.2 False 4066 mRNA 0.44 4 25379373 25408777
TU2114047 True 1183 lncRNA 0.36 2 25407425 25408690

Neighbor

gene id symbol gene type direction distance location
LOC110502484 LOC106607303 coding upstream 460579 24845979 ~ 24918794 (+)
LOC110502482 LOC106607268 coding upstream 607293 24769852 ~ 24772080 (+)
LOC110502480 LOC106607275 coding upstream 626423 24739716 ~ 24752950 (+)
LOC110502478 LOC106607248 coding upstream 648138 24701721 ~ 24731235 (+)
LOC110502476 LOC106605659 coding upstream 872817 24430642 ~ 24506556 (+)
LOC110503058 NA coding downstream 6241 25415018 ~ 25418542 (+)
adam12 LOC106607406 coding downstream 146105 25554882 ~ 25701103 (+)
dhx32b dhx32 coding downstream 305308 25714085 ~ 25721003 (+)
tex36 tex36 coding downstream 325493 25734270 ~ 25737433 (+)
ctbp2a ctbp2 coding downstream 356183 25764960 ~ 25884620 (+)
G1846540 NA non-coding upstream 130160 25217450 ~ 25249213 (+)
G1846539 NA non-coding upstream 162284 25216799 ~ 25217089 (+)
G1846534 NA non-coding upstream 169600 25209571 ~ 25209773 (+)
G1846527 NA non-coding upstream 176836 25202324 ~ 25202537 (+)
G1846384 NA non-coding upstream 250638 25128491 ~ 25128735 (+)
G1846671 NA non-coding downstream 15292 25424069 ~ 25424323 (+)
G1846672 NA non-coding downstream 15819 25424596 ~ 25424804 (+)
G1846667 NA non-coding downstream 21170 25429947 ~ 25430507 (+)
G1846678 NA non-coding downstream 26732 25435509 ~ 25435741 (+)
G1846679 NA non-coding downstream 27159 25435936 ~ 25436137 (+)
G1845108 NA other upstream 1025127 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 2032884 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 4594170 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 4862487 20358591 ~ 20516930 (+)
G1839872 NA other upstream 5314386 20062064 ~ 20064987 (+)
G1849208 LOC106607606 other downstream 1865561 27274338 ~ 27276259 (+)
LOC110502527 LOC106607701 other downstream 2581497 27990245 ~ 27993189 (+)
LOC110502528 bic1a other downstream 2593098 28001291 ~ 28078254 (+)
LOC110502541 LOC106607837 other downstream 3089246 28497576 ~ 28571528 (+)
G1851386 NA other downstream 3634584 29043361 ~ 29075998 (+)

Expression


Co-expression Network