LOC110503094 (edrf1)


Basic Information

Item Value
gene id LOC110503094
gene name edrf1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 25728488 ~ 25735408 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110503094
ATGAGTTCAGCAACAGCTGGGATTGGGAACCGAGAGGATGGCGTCCCTCCAGACCGTGGAAGTGAAAAAGTGGATGACAGTGGGGGCGACAGTGGCAGGCAAGGCAACAACGAAATAAAGAACCGTGCAGTGAAGTGCTCTGCTGCCCCTCAACCAACCACCTATGCACTACTACAGGAGAAGACTGATCTGAAGCTGCCTCCTGCCAACTGGCTACGGGAGAGCCCCCAACGTGGGCCTGCAGGCACCTCTAACATCAATAATCTATTGAAGATCCCCTACAGTAAGTCCCATGTCAGTATGGCTGTCCACCGTGTGGGAAGGTCTCTCCTTCTAGATGAACTGGCTCTTCATGAGTTCTTCTCAGACAACCCTGTTGAGGAGTGTGGGGCGGAGGATTTGGTCCCTCCTGGCCCGTTACCTTCATCAGCACTGCTTCAGACTCGGAGGAGGCCGCAGCACACAGAGGAATGTGTTCCCATGGACAGCAAGTATCCATTGGGACAAGTGGCTTCCAAAGAGCAGAACCTTACCACATTGTTCAACAAAGGGGAGAACAGTCAGGGTTTGAGGAATAACTTTGTGAGGAACATCTTGTGGATGTTTGAGGACATCCACATGCTGGTGGGGTCCAACATGCCTATCTTTGGAGAAGGATGCTACCCAGCCTGCGGCTCAGAACCTCAAGCCAATCAACATTCTCGCAGTGGAAGTGACATCGTAAAGCTGTATGACCTCATCACTCTCTGTGAGGAAGCAGCAGAGGAGAAATGCCAGAACCCCTTCACCCTGCCCGTGGATATGCCTCTTTACAAAGTGGCTAGCAACATGATGCTGAAGAAGAGCCAGAACAGGAAGCATTATGGGACAATCGGAACGTTGCTGTGGGCGGGGGGCTCTTGAGGACAGCTACAGTGACGAGGAGGCTCAAGAAGATCTACCAGAGGACAGTCATGAGAATGGCTCCTGCAGTACCACCTCGGAGCCACAGGATGATAGCAAAGCTGTAGCTATTATCAAATCAGTGGGGGAGCTGTCTGTTCTAGAGAAGTCCAAGTACACTCATCAGATCAGGCCAATCTATGCATTTCCCATCTCTCAAAACAAGGAGGAAAGATGTCGGGATGTCCTCAGCTATGTCTTAAATGCCTGTTGGATGGCAGCATTAAGAAGGAGAGTGACCTCCCAGCTGCTGACCCAGAACACCCCCATCCCCCTGAAGTTCCTTGTTCCTCTGTCCCGATCAGGGATGATCCCAGGGTCCTGGCAGCACCGTATGAAGCTGCAGCTCTTCTTCAAAGTGCCCAAGGCCTACTACATACTGTCAGACGCTGCCACTAACCTGCTGAAGAACAGCCGGTCCCTGCACTACATCAAACTCACCCTCCAGTGCCACGatGCCTACTGTTCGGTGAGGAGTATCATGTACCTGCTGGTGCTACTGTTCCGCGtccagtgtctgtctctgtgtggggACATCCATCTGTTGCTGGCCCGGAATGCAAGTAACCGTGCTGCCTACCTTTAGGAGTCCAGCTACCAGACCAACAAGGACCAGGAGTTGCTGCACAGAGAGAGCAGCTGCAAGGCCTTTAATATGGCCAGTGATCTGGCCATGGACCGAGAGTACTAGCTGTTTGTGAGCAGTAAGTGTTATGAGGCGGCCTACGAGCTGCTGACCTCCGGGTGGTAAAGGAGCACAGCCCTGAACAGCTAGCCCAGGTGCTGAAGAGACTGGGCAACATTTGCAACGAGATAGGAGTCTTCTACATGAACCAGGCTGCTGCCATGCAGACTAAGAAGGAAGTGAACAAGTCTGTATCTATAGCTGAACAGGAGATGTGGAAGAAGAGTTTCTCGTGCTTTGAGAAGGGCATGAAGAACTTTGAGGCCATCGAGTACAGCACCAACACCTCTCTGCTGCTGTGCAACACAGGCAAACTGATGAGGATCTGTGCCCAGGCCCACTGCTGTCTCTGCAGACCTGAGCAGAGGAGAGTTCTCCCAAGAGGAAGCTCTCTATTACAATAAGACTGCCTACCTGAGGGCTATGCAGTCCTTGGCCACCAGAGGGAACCACCCTGCAGTGTGGGACTTGTCCGCAACCTACTTCAGCCTGGCCACTCTGCTGCAAGAAGTTGCCCCTCTGTCCAGGAAGGCCCAGGAACAGATTGAGCAGGAGGCACAGGAGCCTGGCAGAGCTACGGCACAGGAGCCTGAGCTGCGCCACAGCAAGGCGACGGATGGCCCAGAGTTGACAGGACCCCTTGACAGTAGTGCAGATGGCCCCATCTCCTCAGGGCTGAACACAAAGGAAGTGATGCAGTTGATCGGTGTCTTTGAGCTCAGTTTCTCCTTCCTACTGCTGCAGGTGGTCAAGCTGATGACAACCATGAAGCGCAAACCAATGTGA
>TU2114696
ACAGAACGTCTAAAGCAAGTGGTGTTGTTCATTCCGTCTGGAAGGTTCTGCAAAACAGTGATAGATTAAATGTAAAAGCAGTAACTCAATTTGTTAGCTAATTTTTATATCGTTCTGATCATGAACAAATAACGTTATGTCGTTTGGTGTGTAaagttatgttagctagctactagcaGCAGGTGGTGAGTTAGCAGCAATCTTGTGACAAGGCAATTGTTGTTGACATTTTAAGGCAGTTAGTTTGCTATGAACGGGTACCCCTTGGACAGCATTCGTTTGTGTGGCCAGGAGCTAGCTTGTAGATAGAACATGAGTTCAGCAACAGCTGGGATTGGGAACCGAGAGGATGGCGTCCCTCCAGACCGTGGAAGTGAAAAAGTGGATGACAGTGGGGGCGACAGTGGCAGGAGTCGGGAGATGTGCCTAGGGCAACAACGAAATAAAGAACCGTGCAGTGAAGTGCTCTGCTGCCCCTCAACCAACCACCTATGCACTACTACAGGAGAAGACTGATCTGAAGCTGCCTCCTGCCAACTGGCTACGGGAGAGCCCCCAACGTGGGCCTGCAGGCACCTCTGTACTAGGGTCCAGCAGCAAGAGCAAGCCTTTCTCCAGAACATCAATAATCTATTGAAGATCCCCTACAGTAAGTCCCATGTCAGTATGGCT

Function

symbol description
edrf1 Predicted to be involved in positive regulation of transcription, DNA-templated. Orthologous to human EDRF1 (erythroid differentiation regulatory factor 1).

NR:

description
PREDICTED: erythroid differentiation-related factor 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110503094 False 2413 mRNA 0.47 19 25728488 25735096
TU2114696 True 672 lncRNA 0.47 3 25734162 25735408

Neighbor

gene id symbol gene type direction distance location
LOC110503093 NA coding downstream 24068 25703256 ~ 25704420 (-)
LOC110503059 NA coding downstream 309889 25417364 ~ 25418599 (-)
LOC110502487 LOC106607391 coding downstream 536163 25131256 ~ 25192325 (-)
gnrh1 gnrh1 coding downstream 599537 25127611 ~ 25128951 (-)
LOC118943844 NA coding downstream 882284 24839909 ~ 24846204 (-)
LOC110502495 zranb1 coding upstream 149860 25884956 ~ 25932474 (-)
LOC110502496 fam175b coding upstream 204630 25939726 ~ 25947986 (-)
LOC110502501 gpr26 coding upstream 491534 26226630 ~ 26230546 (-)
LOC110502502 hmx2 coding upstream 659137 26387522 ~ 26398133 (-)
LOC110502503 hmx3 coding upstream 668517 26403613 ~ 26406554 (-)
G1846928 NA non-coding downstream 205123 25523085 ~ 25523365 (-)
G1846927 NA non-coding downstream 205572 25522270 ~ 25522916 (-)
G1846901 NA non-coding downstream 222590 25505670 ~ 25505898 (-)
G1846868 NA non-coding downstream 276903 25451335 ~ 25451585 (-)
G1846866 NA non-coding downstream 280058 25448160 ~ 25448430 (-)
G1847409 NA non-coding upstream 29892 25764988 ~ 25818675 (-)
G1847511 NA non-coding upstream 164900 25899996 ~ 25905382 (-)
G1847576 NA non-coding upstream 279727 26014823 ~ 26015088 (-)
G1847579 NA non-coding upstream 280815 26015911 ~ 26016597 (-)
G1847580 NA non-coding upstream 282364 26017460 ~ 26017691 (-)
G1846858 NA other downstream 288101 25439807 ~ 25440387 (-)
LOC110502462 LOC106607169 other downstream 2382717 23344353 ~ 23358461 (-)
G1843946 NA other downstream 2495065 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other downstream 2510218 23213905 ~ 23218749 (-)
G1841959 NA other downstream 4356689 21345514 ~ 21371799 (-)
G1850441 NA other upstream 2339829 28074925 ~ 28078251 (-)
LOC110502553 NA other upstream 3189643 28919846 ~ 28932600 (-)
LOC110502574 LOC106608078 other upstream 5416513 31151609 ~ 31239202 (-)
G1854905 NA other upstream 5482501 31217597 ~ 31218171 (-)
G1855326 NA other upstream 6244901 31979997 ~ 31981333 (-)

Expression


Co-expression Network