LOC110502499 (chst15)


Basic Information

Item Value
gene id LOC110502499
gene name chst15
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 26129692 ~ 26165747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580556.2
CTTCCCttggtccctccctctcttcagtcTCCCTGACTCGGTTGCAGCGCGAGAGACGAGATGGATAGTCTCTGAATGTTTGCGATCAATCCAGTAGTAGATTATGATGGTTGAAAGCTATCAAAAACAACACAGTTGTGAATTCATTATAATGTGCCAGTTTAAACGTGTGTACCTTACCTCATGGAGATAAAACTTAGTAAATGTTGTATTACCCGAATGGATATGGAATGGTCATGAAGAGCGCGCAAAGGAGTCGAAATTGATTGATTCATCGGATCTTGAATTCTCTCTTCAGAAATCAAGCCTACAGTTGGGATGTTGGCTGCTGGCTCTGGCAGACAATAACCTTCCATGAGTTttaaagagaggacaggaggcccCCTCCCTTTATCAGCAACAGCAGGACCAGGAGAAGAACACATTCAGCTGAGACCTTGAAAGAGAACACTACTGAAGGCCAGACTGTGGTGCTACAGTACCTGTTGTGCCTACAGCAACATTTGGAGCAGCCATGATGGATAAACCCTCTACTGCTCCTCCACACACCTCCCATCCCACAATAGATGTGCCTTGACGGCCCCAGTCCCTCCCCTCTGACATCTGCATCCCCCTCTCCACAGCCCTGTTCCATCCTGTCTACATAATGTCTCGTACAGACTACAAAAATGGTGCCATTTCTCAAACGGACTACACATATGGCCAACTCTGCCCCATGGAAGttaagaactacaggaaaagacCCACAATGCTTTGTTTGGACGATGTGGATGACGGTCACATAATCCTGCCCAGTGTCCTGGAGGTGAGGCGGGTTCCTCTGTGGCCATTGGGCCCCCTGAGGAGTGTCACAAAGGTCAAGGTTATCAGCTTCCTGTTCGGACTAACATTGACCATCCTCATTATGGCTTCTTACGTCTTGACCTTGGATAAAAAGGGTCTGATGCTGACACCGCCACCGTTCCACCTCAGTACTATAGTCAACCCCAGCAGCACCATCTCCCCTAACCTGCCCTCTACCAAGGACTATGTCAACATTAACCTCCTGGTGAAGTGCATTACAGCTAAGCTTGAGTTCAGCCCAAGGAAGCTGCCTCTTCTGAAGGACATTGTAAATAGTGACTCTCATTTGTTTTCCATTATTCCTCGTCAGTTCCTCCCCAATATCAAGAGTCCATGCTGGTATGAGGAGCTCTCTGGGAAAACCAAAGTGGATCCTTACAGGAAAAACTTGTATGCAGTTCGCTCCAAGACCTTCCGGACGGTCCGTGACTACCTGAGGAATCATTTCCAGGAACACTTGTCCCACAGCGTCGACGACAAGCAATACCGCCTGCGCTGTCTGCCATATTTCTACATCATTGGCCAGCCCAAATGTGGCACAACGGACCTGTTTCACCGACTGCTGCTACACCCGGAGGTCAAGTTCACCACCATGAAAGAGCCCCACTGGTGGACAAGGAAAAGGTTTGGTATCATCCATCTTAAAGACGGCCTCCTGGAGCGCTTCCCTGTGGAGGACTACCTGGACCTTTTTGACCTGGCTGCCTACCACATCCAGCAGGGAATACTGGGGAATACCTCTGGAGATGACAGCCAGCGACACCTCATCACAGGTGAAGCAAGCGCATCCACAATGTGGGACAACCAAGCCTGGAGCTATCTCTATGACAACCGGGTGGATGGGGAGCCTCCTTTCCTGGCCCAGGACTTCATCCACACTGTTCAGCCCAATGCTAAAATCATCGTCATGCTCAGAGACCCAGTAGAGAGGTTGTATTCAGACTATCTGTACTTCAACATGGCTAACAAGTCAGTGGAGGACTTTGACCAGAGGGTCTCAGAATCCTTACAGCTGTTTGAGGCTTGTTTAGCAGAGAGCTCCATGCGTTCCTGTGTCTACAATACTAGACTTTCCAATGCCATGCCGGTCAGACTGAACCTGGGACTATATATTGTCTTCCTGCTGGACTGGTTGACTGTCTTCCACAGGAATCAGATCCTGGTTCTGCAGTTAGAAGACTACGCTGCCAATCTGAGACTCACCATAAATAAAGTCTTTGACTTCCTAAATGTGGGGCCTTTATCTGAGCAGATCGAGGCAGCACTCACCAAGAGGCCCATGTCCAACACACGGAGGGCAGCAGACAGGAGCTTGGGCCCCATGTTGCCCAGCACCAGGGACCTCCTCAGGGTGTTCCACCGGCCATTCAACCACAAACTGGCCACAGTCCTGGACAACAAGGCCTTCCACTGGACAGAGACATGAGGAATGTCTCAATCAGAGATGGATACAGTCCTGAGGAGTAAGTCCCCCATGGTCCTATGAGTCCTATGAGATGAACTGTCAAGTGGAATAAACCATGGACATTACATGTCACAATGGGTGAATGTATAGACAATAAAATGGCTGAGGTACTGAACAATGCATCTGTCTAGTACTTTTTTAAATACCCTCTATTTAATTAGGCAGGCctgttaagatttttttttttttttacaatgacagcctaccctggccaaaccctaatgcgggtgacactgggccaattgtgcgctaccCTAcaagactcccaatcacggccggttgtgatacagcctggaattgaaccagggcctgtagtgacacctctagcactaagatgcagtgccttagacctctgcgccactcgggaggatACCATTTTTTGTGTGGTTTCACGGTGGTGCCCTTTTTGTGTGGTTTCACGGCGGTGCCCTTTCATGTTGGTGAAGAGTTCGCTTTTTTTTGGAGACTCCAGGAAAATGACTAGGATAGAACCTGGTGGACTACTCCCTCTAGTGGGAAGCTTTCCACATGACACATACTGAGAGTGAAAGGAGAGCCTTCACAATGCTAATGATGGATCATTTTTAAATACTGTATGCCAGTGTTTCCCATCTccagtcctcgagtacccccaacagcacacatttttgttgtagccctcggcaaactcacctgattcaaaTCATTACGGGCTTGATGATTAAtagacaagttgaatcaggtgggCTTGTCCAGGGCTACAAAAAACGTGCagttgggggtactcgaggactggagttgaaaATACTGCTGTATGCCACTGGGCATTTCAATTGCAGTCATTGTGAAATAATTCTGTAAGAAACAATATTGGAGCAAACAGCACAATGGATTTTATCAGATGACGTTGCCTTCAAGTAATGGAAGGTGATGCCAAAGAAACATTTCCATCCTGGATGGGCAATAAagttttattctattctattaatCTTTAAAAACAAACACGAAACACCCTGTTTCTACGGCCATACAATGTTCATTTTAACTAcattaaatgtattaaatgttaAAGACGTAAACAAATGGTCATAAGCTGCTTTTTTCATATGAAATTTGTGTTTGAGCATAGACGCCATTCTATACTGCCCTAGACACACATTGGTACACG
>XM_021580557.2
CTTCCCttggtccctccctctcttcagtcTCCCTGACTCGGTTGCAGCGCGAGAGACGAGATGGATAGTCTCTGAATGTTTGCGATCAATCCAGTAGTAGATTATGATGGTTGAAAGCTATCAAAAACAACACAGTTGTGAATTCATTATAATGTGCCAGTTTAAACGTGTGTACCTTACCTCATGGAGATAAAACTTAGTAAATGTTGTATTACCCGAATGGATATGGAATGGTCATGAAGAGCGCGCAAAGGAGTCGAAATTGATTGATTCATCGGATCTTGAATGAGAACACTACTGAAGGCCAGACTGTGGTGCTACAGTACCTGTTGTGCCTACAGCAACATTTGGAGCAGCCATGATGGATAAACCCTCTACTGCTCCTCCACACACCTCCCATCCCACAATAGATGTGCCTTGACGGCCCCAGTCCCTCCCCTCTGACATCTGCATCCCCCTCTCCACAGCCCTGTTCCATCCTGTCTACATAATGTCTCGTACAGACTACAAAAATGGTGCCATTTCTCAAACGGACTACACATATGGCCAACTCTGCCCCATGGAAGttaagaactacaggaaaagacCCACAATGCTTTGTTTGGACGATGTGGATGACGGTCACATAATCCTGCCCAGTGTCCTGGAGGTGAGGCGGGTTCCTCTGTGGCCATTGGGCCCCCTGAGGAGTGTCACAAAGGTCAAGGTTATCAGCTTCCTGTTCGGACTAACATTGACCATCCTCATTATGGCTTCTTACGTCTTGACCTTGGATAAAAAGGGTCTGATGCTGACACCGCCACCGTTCCACCTCAGTACTATAGTCAACCCCAGCAGCACCATCTCCCCTAACCTGCCCTCTACCAAGGACTATGTCAACATTAACCTCCTGGTGAAGTGCATTACAGCTAAGCTTGAGTTCAGCCCAAGGAAGCTGCCTCTTCTGAAGGACATTGTAAATAGTGACTCTCATTTGTTTTCCATTATTCCTCGTCAGTTCCTCCCCAATATCAAGAGTCCATGCTGGTATGAGGAGCTCTCTGGGAAAACCAAAGTGGATCCTTACAGGAAAAACTTGTATGCAGTTCGCTCCAAGACCTTCCGGACGGTCCGTGACTACCTGAGGAATCATTTCCAGGAACACTTGTCCCACAGCGTCGACGACAAGCAATACCGCCTGCGCTGTCTGCCATATTTCTACATCATTGGCCAGCCCAAATGTGGCACAACGGACCTGTTTCACCGACTGCTGCTACACCCGGAGGTCAAGTTCACCACCATGAAAGAGCCCCACTGGTGGACAAGGAAAAGGTTTGGTATCATCCATCTTAAAGACGGCCTCCTGGAGCGCTTCCCTGTGGAGGACTACCTGGACCTTTTTGACCTGGCTGCCTACCACATCCAGCAGGGAATACTGGGGAATACCTCTGGAGATGACAGCCAGCGACACCTCATCACAGGTGAAGCAAGCGCATCCACAATGTGGGACAACCAAGCCTGGAGCTATCTCTATGACAACCGGGTGGATGGGGAGCCTCCTTTCCTGGCCCAGGACTTCATCCACACTGTTCAGCCCAATGCTAAAATCATCGTCATGCTCAGAGACCCAGTAGAGAGGTTGTATTCAGACTATCTGTACTTCAACATGGCTAACAAGTCAGTGGAGGACTTTGACCAGAGGGTCTCAGAATCCTTACAGCTGTTTGAGGCTTGTTTAGCAGAGAGCTCCATGCGTTCCTGTGTCTACAATACTAGACTTTCCAATGCCATGCCGGTCAGACTGAACCTGGGACTATATATTGTCTTCCTGCTGGACTGGTTGACTGTCTTCCACAGGAATCAGATCCTGGTTCTGCAGTTAGAAGACTACGCTGCCAATCTGAGACTCACCATAAATAAAGTCTTTGACTTCCTAAATGTGGGGCCTTTATCTGAGCAGATCGAGGCAGCACTCACCAAGAGGCCCATGTCCAACACACGGAGGGCAGCAGACAGGAGCTTGGGCCCCATGTTGCCCAGCACCAGGGACCTCCTCAGGGTGTTCCACCGGCCATTCAACCACAAACTGGCCACAGTCCTGGACAACAAGGCCTTCCACTGGACAGAGACATGAGGAATGTCTCAATCAGAGATGGATACAGTCCTGAGGAGTAAGTCCCCCATGGTCCTATGAGTCCTATGAGATGAACTGTCAAGTGGAATAAACCATGGACATTACATGTCACAATGGGTGAATGTATAGACAATAAAATGGCTGAGGTACTGAACAATGCATCTGTCTAGTACTTTTTTAAATACCCTCTATTTAATTAGGCAGGCctgttaagatttttttttttttttacaatgacagcctaccctggccaaaccctaatgcgggtgacactgggccaattgtgcgctaccCTAcaagactcccaatcacggccggttgtgatacagcctggaattgaaccagggcctgtagtgacacctctagcactaagatgcagtgccttagacctctgcgccactcgggaggatACCATTTTTTGTGTGGTTTCACGGTGGTGCCCTTTTTGTGTGGTTTCACGGCGGTGCCCTTTCATGTTGGTGAAGAGTTCGCTTTTTTTTGGAGACTCCAGGAAAATGACTAGGATAGAACCTGGTGGACTACTCCCTCTAGTGGGAAGCTTTCCACATGACACATACTGAGAGTGAAAGGAGAGCCTTCACAATGCTAATGATGGATCATTTTTAAATACTGTATGCCAGTGTTTCCCATCTccagtcctcgagtacccccaacagcacacatttttgttgtagccctcggcaaactcacctgattcaaaTCATTACGGGCTTGATGATTAAtagacaagttgaatcaggtgggCTTGTCCAGGGCTACAAAAAACGTGCagttgggggtactcgaggactggagttgaaaATACTGCTGTATGCCACTGGGCATTTCAATTGCAGTCATTGTGAAATAATTCTGTAAGAAACAATATTGGAGCAAACAGCACAATGGATTTTATCAGATGACGTTGCCTTCAAGTAATGGAAGGTGATGCCAAAGAAACATTTCCATCCTGGATGGGCAATAAagttttattctattctattaatCTTTAAAAACAAACACGAAACACCCTGTTTCTACGGCCATACAATGTTCATTTTAACTAcattaaatgtattaaatgttaAAGACGTAAACAAATGGTCATAAGCTGCTTTTTTCATATGAAATTTGTGTTTGAGCATAGACGCCATTCTATACTGCCCTAGACACACATTGGTACACGT
>XM_036960419.1
CTTCCCttggtccctccctctcttcagtcTCCCTGACTCGGTTGCAGCGCGAGAGACGAGATGGATAGTCTCTGAATGTTTGCGATCAATCCAGTAGTAGATTATGATGGTTGAAAGCTATCAAAAACAACACAGTTGTGAATTCATTATAATGTGCCAGTTTAAACGTGTGTACCTTACCTCATGGAGATAAAACTTAGTAAATGTTGTATTACCCGAATGGATATGGAATGGTCATGAAGAGCGCGCAAAGGAGTCGAAATTGATTGATTCATCGGATCTTGAATTCTCTCTTCAGAAATCAAGCCTACAGTTGGGATGTTGGCTGCTGGCTCTGGCAGACAATAACCTTCCATGAGTTttaaagagaggacaggaggcccCCTCCCTTTATCAGCAACAGCAGGACCAGGAGAAGAACACATTCAGCTGAGACCTTGAAAGAGAACACTACTGAAGGCCAGACTGTGGTGCTACAGTACCTGTTGTGCCTACAGCAACATTTGGAGCAGCCATGATGGATAAACCCTCTACTGCTCCTCCACACACCTCCCATCCCACAATAGATGTGCCTTGACGGCCCCAGTCCCTCCCCTCTGACATCTGCATCCCCCTCTCCACAGCCCTGTTCCATCCTGTCTACATAATGTCTCGTACAGACTACAAAAATGGTGCCATTTCTCAAACGGACTACACATATGGCCAACTCTGCCCCATGGAAGttaagaactacaggaaaagacCCACAATGCTTTGTTTGGACGATGTGGATGACGGTCACATAATCCTGCCCAGTGTCCTGGAGGTGAGGCGGGTTCCTCTGTGGCCATTGGGCCCCCTGAGGAGTGTCACAAAGGTCAAGGTTATCAGCTTCCTGTTCGGACTAACATTGACCATCCTCATTATGGCTTCTTACGTCTTGACCTTGGATAAAAAGGGTCTGATGCTGACACCGCCACCGTTCCACCTCAGTACTATAGTCAACCCCAGCAGCACCATCTCCCCTAACCTGCCCTCTACCAAGGACTATGTCAACATTAACCTCCTGGTGAAGTGCATTACAGCTAAGCTTGAGTTCAGCCCAAGGAAGCTGCCTCTTCTGAAGGACATTGTAAATAGTGACTCTCATTTCCTCCCCAATATCAAGAGTCCATGCTGGTATGAGGAGCTCTCTGGGAAAACCAAAGTGGATCCTTACAGGAAAAACTTGTATGCAGTTCGCTCCAAGACCTTCCGGACGGTCCGTGACTACCTGAGGAATCATTTCCAGGAACACTTGTCCCACAGCGTCGACGACAAGCAATACCGCCTGCGCTGTCTGCCATATTTCTACATCATTGGCCAGCCCAAATGTGGCACAACGGACCTGTTTCACCGACTGCTGCTACACCCGGAGGTCAAGTTCACCACCATGAAAGAGCCCCACTGGTGGACAAGGAAAAGGTTTGGTATCATCCATCTTAAAGACGGCCTCCTGGAGCGCTTCCCTGTGGAGGACTACCTGGACCTTTTTGACCTGGCTGCCTACCACATCCAGCAGGGAATACTGGGGAATACCTCTGGAGATGACAGCCAGCGACACCTCATCACAGGTGAAGCAAGCGCATCCACAATGTGGGACAACCAAGCCTGGAGCTATCTCTATGACAACCGGGTGGATGGGGAGCCTCCTTTCCTGGCCCAGGACTTCATCCACACTGTTCAGCCCAATGCTAAAATCATCGTCATGCTCAGAGACCCAGTAGAGAGGTTGTATTCAGACTATCTGTACTTCAACATGGCTAACAAGTCAGTGGAGGACTTTGACCAGAGGGTCTCAGAATCCTTACAGCTGTTTGAGGCTTGTTTAGCAGAGAGCTCCATGCGTTCCTGTGTCTACAATACTAGACTTTCCAATGCCATGCCGGTCAGACTGAACCTGGGACTATATATTGTCTTCCTGCTGGACTGGTTGACTGTCTTCCACAGGAATCAGATCCTGGTTCTGCAGTTAGAAGACTACGCTGCCAATCTGAGACTCACCATAAATAAAGTCTTTGACTTCCTAAATGTGGGGCCTTTATCTGAGCAGATCGAGGCAGCACTCACCAAGAGGCCCATGTCCAACACACGGAGGGCAGCAGACAGGAGCTTGGGCCCCATGTTGCCCAGCACCAGGGACCTCCTCAGGGTGTTCCACCGGCCATTCAACCACAAACTGGCCACAGTCCTGGACAACAAGGCCTTCCACTGGACAGAGACATGAGGAATGTCTCAATCAGAGATGGATACAGTCCTGAGGAGTAAGTCCCCCATGGTCCTATGAGTCCTATGAGATGAACTGTCAAGTGGAATAAACCATGGACATTACATGTCACAATGGGTGAATGTATAGACAATAAAATGGCTGAGGTACTGAACAATGCATCTGTCTAGTACTTTTTTAAATACCCTCTATTTAATTAGGCAGGCctgttaagatttttttttttttttacaatgacagcctaccctggccaaaccctaatgcgggtgacactgggccaattgtgcgctaccCTAcaagactcccaatcacggccggttgtgatacagcctggaattgaaccagggcctgtagtgacacctctagcactaagatgcagtgccttagacctctgcgccactcgggaggatACCATTTTTTGTGTGGTTTCACGGTGGTGCCCTTTTTGTGTGGTTTCACGGCGGTGCCCTTTCATGTTGGTGAAGAGTTCGCTTTTTTTTGGAGACTCCAGGAAAATGACTAGGATAGAACCTGGTGGACTACTCCCTCTAGTGGGAAGCTTTCCACATGACACATACTGAGAGTGAAAGGAGAGCCTTCACAATGCTAATGATGGATCATTTTTAAATACTGTATGCCAGTGTTTCCCATCTccagtcctcgagtacccccaacagcacacatttttgttgtagccctcggcaaactcacctgattcaaaTCATTACGGGCTTGATGATTAAtagacaagttgaatcaggtgggCTTGTCCAGGGCTACAAAAAACGTGCagttgggggtactcgaggactggagttgaaaATACTGCTGTATGCCACTGGGCATTTCAATTGCAGTCATTGTGAAATAATTCTGTAAGAAACAATATTGGAGCAAACAGCACAATGGATTTTATCAGATGACGTTGCCTTCAAGTAATGGAAGGTGATGCCAAAGAAACATTTCCATCCTGGATGGGCAATAAagttttattctattctattaatCTTTAAAAACAAACACGAAACACCCTGTTTCTACGGCCATACAATGTTCATTTTAACTAcattaaatgtattaaatgttaAAGACGTAAACAAATGGTCATAAGCTGCTTTTTTCATATGAAATTTGTGTTTGAGCATAGACGCCATTCTATACTGCCCTAGACACACATTGGTACACGTCCTCACAC

Function

symbol description
chst15 Predicted to enable N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity. Predicted to be involved in hexose biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in midbrain neural keel; midbrain neural tube; and somite. Orthologous to human CHST15 (carbohydrate sulfotransferase 15).

NR:

description
carbohydrate sulfotransferase 15

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580556.2 False 3455 mRNA 0.47 9 26129692 26165738
XM_021580557.2 False 3300 mRNA 0.47 8 26129692 26165739
XM_036960419.1 True 3440 mRNA 0.47 9 26129692 26165747

Neighbor

gene id symbol gene type direction distance location
LOC110503095 nkx1-2 coding upstream 39624 26086792 ~ 26090068 (+)
LOC110502498 fam53b coding upstream 126176 25965470 ~ 26003516 (+)
eef1akmt2 mettl10 coding upstream 172962 25948315 ~ 25956730 (+)
ctbp2a ctbp2 coding upstream 245072 25764960 ~ 25884620 (+)
tex36 tex36 coding upstream 392259 25734270 ~ 25737433 (+)
LOC110502505 LOC106607516 coding downstream 275350 26441097 ~ 26456885 (+)
LOC118943853 NA coding downstream 298795 26464542 ~ 26469614 (+)
LOC110502508 LOC106607536 coding downstream 305613 26471360 ~ 26529362 (+)
LOC110502507 LOC106607527 coding downstream 349369 26515116 ~ 26545433 (+)
LOC110502510 LOC106607591 coding downstream 399539 26565286 ~ 26603085 (+)
G1847687 NA non-coding upstream 16867 26112593 ~ 26112825 (+)
G1847601 NA non-coding upstream 72682 26050803 ~ 26057010 (+)
G1847207 fam175b non-coding upstream 181773 25945222 ~ 25947919 (+)
G1847194 fam175b non-coding upstream 187903 25938901 ~ 25941789 (+)
G1847179 NA non-coding upstream 224485 25899803 ~ 25905207 (+)
G1847890 NA non-coding downstream 92921 26258668 ~ 26258913 (+)
G1847987 NA non-coding downstream 174230 26339977 ~ 26340179 (+)
G1848045 NA non-coding downstream 207810 26373557 ~ 26373841 (+)
G1848062 NA non-coding downstream 219615 26385362 ~ 26385690 (+)
G1848074 NA non-coding downstream 235887 26401634 ~ 26401848 (+)
G1845108 NA other upstream 1775446 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 2783203 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 5344489 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 5612806 20358591 ~ 20516930 (+)
G1839872 NA other upstream 6064705 20062064 ~ 20064987 (+)
G1849208 LOC106607606 other downstream 1108591 27274338 ~ 27276259 (+)
LOC110502527 LOC106607701 other downstream 1824527 27990245 ~ 27993189 (+)
LOC110502528 bic1a other downstream 1836128 28001291 ~ 28078254 (+)
LOC110502541 LOC106607837 other downstream 2332276 28497576 ~ 28571528 (+)
G1851386 NA other downstream 2877614 29043361 ~ 29075998 (+)

Expression


Co-expression Network