LOC110502503 (hmx3)


Basic Information

Item Value
gene id LOC110502503
gene name hmx3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 26403613 ~ 26406554 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580561.2
GGGTGGACTTCGTTGTTATCGCGTAGCCTAcaccccctttctctctacctctctctctctctctctctctgcccgtctCTCCCCCCTCGTTCTACTTCCCATCTCTTCCTTAATCCCATTTGCCATTGTACATGCCCAATCGCCGTATACTTTCCGCATTTAACTTGGATGACATTTTTATTTCATCATTAGCATCCGGCGCCAGACTGACGCGGTGGACACAGTTGCATTTTGACTAAGGAGCGCACAAGACTTGGATGCAATATCGATATTATTTTGTTCTCTCTGAAGAATATTTACTTTTCTgatgtgtattttatttttgtcGTTCTCGATCATCTGGTAATCAAGACGATATTCCTAATTTAAAACATCGCAAAGAAGGACAATTACCAGTCTTCTATTTGAATAATATCACAGTTTCTAAGTCATTTAACACTTACATTTGTGGTCTAAGGCATTAGGACCACAACCTCCAAGCAGCAATGCCCGAGACGGCGCAAGAGACGTGCACTCCGGTGAAAGACTCTCCCTTCTTCATTAAGAACTTGCTGAACTGTGATAGTAAACCATCCAAACCCAAGCCCATCTTCGCCTCGGCAAAGGTTGCTTTTGAAGGGGGCTTTTCTCTATCCCAGGTCGGGGACTTCAACTTTCCTCGCTTTGAGTTACCCACACAGAGGTTTGCCTTACCGGCGCACTATCTGGAGCGAGCCTCAGCATGGTGGTATCCCTACACACTCAGTGCAGCCAGTCATCTACACAGAACCGAAGTTGCGGAGAAGGCAAGAGCAAGAGACTCCTCTCCAACCTCGTGCACGGATCGCGACTCGCCAGACCTGGTGCTCAAATCTGACCCAGACAGCAAAGAAGACGAGGACAACAAAAGTGGGGATGAAATAGTTCTTGAAGAGAGTGATCCTGAGGACACAAAGAAAGACAGTGGGGTAGACGACTGGAAGAAAAACGAGGACGGTGGGGACAAGAAAGCATGTCGAAAAAAGAAAACACGCACAGTGTTCTCCCGGAGTCAGGTGTTTCAGCTCGAGTCCACCTTTGACATGAAACGCTACTTGAGCAGTTCGGAGAGGGCCGGATTGGCAGCGTCTTTGCACCTGACAGAGACCCAGGTAAAGATTTGGTTCCAGAACAGAAGAAATAAATGGAAGAGACAGCTTGCCGCTGAACTAGAGGCTGCCAATCTGAGCCACGCCACTGCACAGAGGATAGTGCGAGTGCCCATCCTCTACCACGAGAACTCTGCCTCAGAGACTGGCAGTGCGACCGGGAACGTGCCTGTGAGCCAGCCGCTCCTCACCTTCCCTCACCACCTCTATTACTCTCACCCAATCGTCACCTCTGTGCCGCTACTCAGACCGGTCTGAAAAACAAGATGTTGTTGTCTATATTCCTAACTCGTACAGAACACTACACAATACAAACTAAAACAATATTTTtgtaaagaagaaaaataaaaataaaaaagagagCCATGCTTTCTGTCAAAGAGGACCTATTGCGCATTTTTATATTAGACTGCAGTTTACATTTTCTCTGGTATAATTTCACACTATTagcatattgttattattaatattaaaAGTATTCTTCTAATTAttgttataataataattataattaggTATATTATTATTAGGCCTTTTGTTATTATAGCAGCTTTGAGATCATTTCCGCTAAGACTATCCAGTTCACACTGTCCCAAAATACATTTCAGCAAGCCTGTTTTCCCCGCGCAGAACCATAACGTTCAGGAAATTAGTTAATTTTGTTCCATTTCCATTTACAACGTGTGTTATGACAATTCGGTAACATTGGTTTGTTTTCTATCGGACAATGTGATTTTTGATATGGGCAATACTGTAAGCACTAGCATTTGACCCCAAGTTATGTGATAGACCCATTCAATTCATTGTGTTTTCTCTTTGCTCAGCTATTTAGGAATGAATATCGGACAGATTATCGAACgggcttatttttttcttttcttttttcaaCTTAAAGCGCTTTAGCAGCGGACAATCAAGATACATTGTTTTATGTACAATATAATTGTAGTTTATAGGCTTATTGTTTTGATGTACTGATTCTCATTTCTGCTTGCTCGACAATGTCCTTATAGCACAACTAAGAATTGAATGCCTTTTGTGTTTTTGAAACTTGATCATGGTGTACAAatgtatatggatatattgaatcgAGTCAATGAAAGAAGCTACCTAGGTAATGCTATTCCTTTGTACAGAAAAACACGTTTTGATATTGTATTGCTGAATTATGTTGTGAAATAAATGGAGGTTATTCCATATTTAAATATTTCAAATCAGTGCGTACTCAAGCATGCACAATGATGTAATGAGGTGTAGTCTACATATGCCCCAGGCATCTATTCAAAAATGTCTAATATTGCCTGTTTGCCTCCCAAACAAATTAGGCTATTGTCGACTTTCAAAACGTTTTCATGAACAGGATTTATTGTTGCATAATGAAAATGaatataaataaacaaacaatacAA

Function

symbol description
hmx3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in ear development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including embryo implantation; maternal process involved in female pregnancy; and neuromuscular process controlling balance. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
homeobox protein HMX3-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0048916 posterior lateral line development biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09349 NKX5, HMX; homeobox protein Nkx-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580561.2 True 2536 mRNA 0.41 2 26403613 26406554

Neighbor

gene id symbol gene type direction distance location
LOC110502502 hmx2 coding downstream 5480 26387522 ~ 26398133 (-)
LOC110502501 gpr26 coding downstream 173067 26226630 ~ 26230546 (-)
LOC110502496 fam175b coding downstream 455627 25939726 ~ 25947986 (-)
LOC110502495 zranb1 coding downstream 471139 25884956 ~ 25932474 (-)
LOC110503094 edrf1 coding downstream 668517 25728488 ~ 25735408 (-)
cuzd1.2 LOC106607512 coding upstream 50456 26457010 ~ 26465890 (-)
LOC110502513 LOC106607606 coding upstream 867998 27252967 ~ 27310171 (-)
LOC110502517 LOC106607615 coding upstream 1017338 27423892 ~ 27435842 (-)
si:ch211-248a14.8 LOC106608780 coding upstream 1043068 27449622 ~ 27453880 (-)
LOC110502526 LOC106607693 coding upstream 1443550 27850104 ~ 27859306 (-)
G1848039 NA non-coding downstream 33431 26369904 ~ 26370182 (-)
G1848038 NA non-coding downstream 33948 26369466 ~ 26369665 (-)
G1848036 NA non-coding downstream 34209 26369134 ~ 26369404 (-)
G1847945 NA non-coding downstream 103046 26300361 ~ 26300567 (-)
G1848177 NA non-coding upstream 11347 26417901 ~ 26418162 (-)
G1848183 NA non-coding upstream 20700 26427254 ~ 26427507 (-)
G1848195 NA non-coding upstream 39689 26446243 ~ 26447841 (-)
G1848203 NA non-coding upstream 61411 26467965 ~ 26468202 (-)
G1848261 NA non-coding upstream 138254 26544808 ~ 26546370 (-)
G1846858 NA other downstream 963226 25439807 ~ 25440387 (-)
LOC110502462 LOC106607169 other downstream 3057842 23344353 ~ 23358461 (-)
G1843946 NA other downstream 3170190 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other downstream 3185343 23213905 ~ 23218749 (-)
G1841959 NA other downstream 5031814 21345514 ~ 21371799 (-)
G1850441 NA other upstream 1668371 28074925 ~ 28078251 (-)
LOC110502553 NA other upstream 2518185 28919846 ~ 28932600 (-)
LOC110502574 LOC106608078 other upstream 4745055 31151609 ~ 31239202 (-)
G1854905 NA other upstream 4811043 31217597 ~ 31218171 (-)
G1855326 NA other upstream 5573443 31979997 ~ 31981333 (-)

Expression


Co-expression Network