LOC110502505 (LOC106607516)



Basic Information


Item Value
gene id LOC110502505
gene name LOC106607516
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 26441097 ~ 26456885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021580564.2
TACCATCTAGTTGATTAGTGCAGTCTGCTTGTATTTAATAAGATCTTGAGAAATAATTAAACTCACCCTGCTGTACTACCACAGAGTTTTAAAAGTGTCTTTGGTGGGCTACATCCACTGAGGTACACAGTATGTGAGCTACTACAGCAGTTATTTCCTAGGAACTGTTCTTCGCGCAATTATTGCACCTTGAGGTGGGACGAATTTCGCGGGTGCACTGGGTGAACTCTCACCTCCACAAATTGCTTCATTGTTTTGATTCAGATAACGTCGCTAGCTCGATATTGCACATTTATGTGATTAGAGACCAACCGACTGATTCTGTAGCACGCTTAGCTATTCGCCATAGGAACTCGATGCAGCCGTAGTCGAGTGATGCCTATGTAAACGGAACAGTTGTTTAGGTCGAAAGACAGTAGCCAGCTGGCTAACCTGAagttagcaacaacaacatgaaCGCTATTTCAACGGAACTGATCAGTCACTTGGACACTTGTCGTCACCGGTCAATTACTGAGTTTGCCACGAATAATCGTCTGTCTTTCACTAGCTGGCTAGAGACAAATTAATACTTGCTAACAATTTGTTTACATTTTGAAAAGTTGATTTATTGCACCTGAAAGCATCTCTACCTTCCAATGGGCGAGGAAAAGCCAGAGACGTTGGACTTTGTCAAAGACTTCCAAGAGTATCTCAGCCAGCAGACTCAACATGTGAACATGATCTCGGGCTCCGTCAGTGGAGTCAAAGAGATGGACGACCTACCAGCAGATTGCAGTCAGAATGGATTAGACCACCCCTCAGCGGATATGTCCCTTGATGACGGCTCAGGGATGCTGGTGGATGGCTTCGAGAGAACATATGACGGCAAACTCAAGTGCCGTTACTGTAACTATGCTACCAGAGGCACAGCACGACTCATTGAACATATCCGCATTCACACAGGAGAGAAACCCCACAGATGCCATCTGTGTCCTTTTGCCTCTGCCTATGAGCGCCACCTAGAGGCCCACATGCGCTcccacacaggagaaaagccttacaaGTGTGAGCTGTGCTCCTTCCGCTGCAGCGACCGCAGCAACCTTTCACACCACCGGCGCCGCCGCCACAAGCTCTTACCCATGAAAGGTgctcgctcttctctctcccacAAGAAGATGCTGAGCGTCCTGCAGAAGAAGACCAGCCTGGGCTATGGTCGCCGGCTCCTCATCAACTTCAGCCCCCCCTCCATGGTGATGCACAAGGCTGAGCACCTGGACGACTACTCCCACGAACTGCCCCACCTGCGCCAGGAGACCTACGACGACCAGGGTGCTGGTGGAGATGGAAGCTCCAGggacaatcaccaccaccacaacctggTCATGGAAAACCCCCTCAaccagctctccaccctggctggTCAACTGGCCAACCTACCCTCTGAAGCTGAGGGCGAGACCCAACAGCCTCCCATATCTCCAGGTGCAGAGTCCTGTGTGGACGAGAAGCCCTTCCTCATCCAGCAGCCTCTCCCAGCCACCGCTTCTGCTGCTGCGTCAGCCAGCACTGCCCatgctgcctcctcctcccccatcacccCAGAGCCCAGGCCCCCACCACACAGCAACTGCAGCCCCGGGGCAGGTCCCTGTAGCGAGCACAGCGGGCGCACCAGTACCCCCAGCATCACCAATAGCCAGCCCAGCACACCAGTCCCGGGCCTGCCCTCGTTGCATCAAGACCCCCAGATGCTGCACCACTGCCAGCACTGTGACATCTACTTCCCTGACAACATCCTGTACACCATCCACATGGGCTGCCACGGCTACGAGAACCCCTTCCAGTGCAACATCTGTGGCCACAAGTGCAGGAGCAAATACGACTTTGCCTGTCATTTTGCCAGGGGACAGCATAAGCAGTGACTTGTCACCGGGTCAGTGACGAAGGACTGGAGATGATTGAAGGTGTTTTTATTTAATTCCATAATGGTGATTTTTATTTATTGCTGTTGATCTTTCTGAAATTGGACATGATGTAGCCTTTGCAAATTCTGTATAGTGAATTTGATTTTTACAGGAAAGAAAATAACATTTGACAGTGCccatgtgtatgtaatgtgtaggGATGGAGTGGTTTAGAGGTACAACTCACTTGACCGGTTTGATCGTTAAACATTCCTTATGTGGGTTTTTGAACATGAACACCATTTTCAGCCTTACTAACATACTGTAGTTATAGATGCTAACATTGTATGAGAGTGCTCGTTTATCGGCTTTAACCGTAACCCACTAAACCATTTCAGAGTGCAAAGACGGCACCATTCATGCCTCCCAACAGTGCCTACCATATTCACAATCACTTTACATTTGTACATTTGACATCTTCAttttttttctgtttgttttttttagatGCGGGTGTTATGTTGTCGTTTGATGGATTTGTAAACCGTGCCCTTCCTTCCTTAACCATCAGCTTTTTGCTAATTGGGTGTCGTGGAAAATAAATCATAACCTTATACATTGTGTTATATTGTGACATTTAAATGGAATATGTCATTGTGAGATCCAATACCTCTACTGTCAAAGCATTATCACCATATCTTTTCTCTTTTGTCAATCCCGTTCAGTCCAGAATTGCCAAGTAGCACCAGAGATGCCATGTTTTAGCATACATGCCATGCCTTTTGGATTTCTTCTGTCCTTATATAATCAAGGCATTGCATATTAGGGATCTGTGCTTTCTTAGACATTTATTGAGCATTGTAATCTACATTTCCCGGTCGGTTAGGTGTTGTGTCAATGAAGTTGAAATTATACTGAAGTGAAGATTACTGCCTTAGCAGGGTTGTTTTGTATTGGATACTGTTGTGTCTGCATAGCAACATTTGTGGAGAACATGGTTACTGTTTCTAGGACTAATTGCATGTCACCGTGCTTACAGGCGTCCAATGATTGAGGGGTTGGGTAAAGGGAAAGTTAACAGGGGGGAAAGAACTTGTAATGGAGTTTGTTTAATGTGTTGTATCTTGATAGAGCAGGTGAATGTAGAAGCGTTTTGGCGATCATCATGTCCCCTTGGATGACAAATTGTTTTATGTGAGAGGAATATTAACACATTTCTAAGTAAAAGTGTTTTCTAACAGA
>TU2115565
CTGCAGCCCCGGGGCAGGTCCCTGTAGCGAGCACAGCGGGCGCACCAGTACCCCCAGCATCACCAATAGCCAGCCCAGCACACCAGTCCCGGGCCTGCCCTCGTTGCATCAAGACCCCCAGATGCTGCACCACTGCCAGCACTGTGACATCTACTTCCCTGACAACATCCTGTACACCATCCACATGGGCTGCCACGGCTACGAGAACCCCTTCCAGTGCAACATCTGTGGCCACAAGTGCAGGAGCAAATACGACTTTGCCTGTCATTTTGCCAGGGGACAGCATAAGCAGTGACTTGTCACCGGGTCAGTGACGAAGGACTGGAGATGATTGAAGGTGTTTTTATTTAATTCCATAATGGTGATTTTTATTTATTGCTGTTGATCTTTCTGAAATTGGACATGATGTAGCCTTTGCAAATTCTGTATAGTGAATTTGATTTTTACAGGAAAGAAAATAACATTTGACAGTGCccatgtgtatgtaatgtgtaggGATGGAGTGGTTTAGAGGTACAACTCACTTGACCGGTTTGATCGTTAAACATTCCTTATGTGGGTTTTTGAACATGAACACCATTTTCAGCCTTACTAACATACTGTAGTTATAGATGCTAACATTGTATGAGAGTGCTCGTTTATCGGCTTTAACCGTAACCCACTAAACCATTTCAGAGTGCAAAGACGGCACCATTCATGCCTCCCAACAGTGCCTACCATATTCACAATCACTTTACATTTGTACATTTGACATCTTCAttttttttctgtttgttttttttagatGCGGGTGTTATGTTGTCGTTTGATGGATTTGTAAACCGTGCCCTTCCTTCCTTAACCATCAGCTTTTTGCTAATTGGGTGTCGTGGAAAATAAATCATAACCTTATACATTGTGTTATATTGTGACATTTAAATGGAATATGTCATTGTGAGATCCAATACCTCTACTGTCAAAGCATTATCACCATATCTTTTCTCTTTTGTCAATCCCGTTCAGTCCAGAATTGCCAAGTAGCACCAGAGATGCCATGTTTTAGCATACATGCCATGCCTTTTGGATTTCTTCTGTCCTTATATAATCAAGGCATTGCATATTAGGGATCTGTGCTTTCTTAGACATTTATTGAGCATTGTAATCTACATTTCCCGGTCGGTTAGGTGTTGTGTCAATGAAGTTGAAATTATACTGAAGTGAAGATTACTGCCTTAGCAGGGTTGTTTTGTATTGGATACTGTTGTGTCTGCATAGCAACATTTGTGGAGAACATGGTTACTGTTTCTAGGACTAATTGCATGTCACCGTGCTTACAGGCGTCCAATGATTGAGGGGTTGGGTAAAGGGAAAGTTAACAGGGGGGAAAGAACTTGTAATGGAGTTTGTTTAATGTGTTGTATCTTGATAGAGCAGGTGAATGTAGAAGCGTTTTGGCGATCATCATGTCCCCTTGGATGACAAATTGTTTTATGTGAGAGGAATATTAACACATTTCTAAGTAAA

Function


NR:

description
PREDICTED: zinc finger protein Pegasus-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021580564.2 False 3134 mRNA 0.47 4 26441097 26456885
TU2115565 True 1503 lncRNA 0.42 1 26455367 26456869

Neighbor


gene id symbol gene type direction distance location
LOC110502499 chst15 coding upstream 275350 26129692 ~ 26165747 (+)
LOC110503095 nkx1-2 coding upstream 351029 26086792 ~ 26090068 (+)
LOC110502498 fam53b coding upstream 437581 25965470 ~ 26003516 (+)
eef1akmt2 mettl10 coding upstream 484367 25948315 ~ 25956730 (+)
ctbp2a ctbp2 coding upstream 556477 25764960 ~ 25884620 (+)
LOC118943853 NA coding downstream 7657 26464542 ~ 26469614 (+)
LOC110502508 LOC106607536 coding downstream 14475 26471360 ~ 26529362 (+)
LOC110502507 LOC106607527 coding downstream 58231 26515116 ~ 26545433 (+)
LOC110502510 LOC106607591 coding downstream 108401 26565286 ~ 26603085 (+)
LOC110502511 LOC106607602 coding downstream 238674 26695559 ~ 27146505 (+)
G1848088 NA non-coding upstream 14044 26426847 ~ 26427053 (+)
G1848074 NA non-coding upstream 39249 26401634 ~ 26401848 (+)
G1848062 NA non-coding upstream 55407 26385362 ~ 26385690 (+)
G1848045 NA non-coding upstream 67256 26373557 ~ 26373841 (+)
G1847987 NA non-coding upstream 100918 26339977 ~ 26340179 (+)
G1848354 NA non-coding downstream 246630 26703515 ~ 26707704 (+)
G1848401 NA non-coding downstream 310086 26766971 ~ 26819859 (+)
G1848400 NA non-coding downstream 319088 26775973 ~ 26907050 (+)
G1848408 NA non-coding downstream 326497 26783382 ~ 26783783 (+)
G1848531 NA non-coding downstream 512266 26969151 ~ 26971834 (+)
G1845108 NA other upstream 2086851 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 3094608 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 5655894 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 5924211 20358591 ~ 20516930 (+)
G1839872 NA other upstream 6376110 20062064 ~ 20064987 (+)
G1849208 LOC106607606 other downstream 817453 27274338 ~ 27276259 (+)
LOC110502527 LOC106607701 other downstream 1533389 27990245 ~ 27993189 (+)
LOC110502528 bic1a other downstream 1544990 28001291 ~ 28078254 (+)
LOC110502541 LOC106607837 other downstream 2041138 28497576 ~ 28571528 (+)
G1851386 NA other downstream 2586476 29043361 ~ 29075998 (+)

Expression



Co-expression Network