LOC118943853


Basic Information

Item Value
gene id LOC118943853
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 26464542 ~ 26469614 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039156.1
CAGGAGTCGGTTGTAGGTGGAATAGCCATCGTACACGGAGATGGAAtcatacctacagttgaagtcaccCTCAAGACTGTGGTCGGAGACCGGAAAGATGAATGAAGTACAATGGCGGTGGCTGCCTACTATACGCTGAATTGACAGAAGACCCCATGGTGGTGGCCATGGCTGTGTGCTGACCGACCAGTAGGAGTGGACAGTGGTGGAAATGGTGAGGGTCAGGAATGACATACGGCTGTCCGAAATTAAGCAGGCCATTGAGGAGAATGATGACACCTTTGCCAATGTGGCATCCATCAGCCTACCAACAATCACTCGCCTTTTTGAAGAGGCACCAGGTATCTATGCAACACATTTACCTGGTGCCTTTTGAGACAAACAATGACCGGGTGAAACAACTGCGGGCTGACTATGTTCAGAGGGTGATGGTGCTTGATGCTGCAGTGAACCATCACAAGTATGTCTTTGTTGATGAAGCAGGCTTCAACCTGGCCAAAACTTGGAGCCGTGGGCAGAACCTCATCTGCCAACAGGTCCAAGTGCCTGGTCAACGTGGGGGAAACATCTCCATGTGCACAGCTATCTCTGAAGATGGTGTGGTAGGACCTATGCCATTACTTGGATCCTAAAATGCTGCACACATTGTGTTTCTCGATTAAATTGAGCAGGCCTGTCAAGGTGAAGGGGTCACCAATATCATTGTGTGGGAAAGTTTCAGGTTCCACCATGCAGAGGTGGGATCAGGCATGGTTTTGGGCCCATCCCTGATTTGTGACCATTTACCTGCACCCATAGTCTCCTTTCCTCGACCCTATTGAGTGTCACCCTCCCTCTGGCCATGGATAATGTATGCGATGACATCAACGCAGACCAGTGTCAAGCTTGGATTCACCATGCCAAATGGTATTTCCCGCGTGCATGAACAATGAGGACATTCATTGTGATGTGAATGAGAATTTATGGCCAAATGCTCGAGACAGGCTTGATGCAAATGAATGCGTGCTTATACGTTATGTTTAATTTTCATTAATGTCATTTGTTTCAATTAATGTATTATATTTGATTACAGACAGTACACATTGTTGCAATTATATCTGAAAAATACAGTTTCTATTTGTATGAATGATTGTAGATGATGTCTTCATTGATCACACCTTTGATTATAAATTGGATAGATATTATGGAAATTATAGATTTTCTGTCAATTTTGTTGGCTAATGTAAGtgtattgcctaatgtgaaaacTGTGTAATCAACTGTCATTTACAATACTGTATCATATTGCTTCAGCACTTTTAAGGGCGATTTAAAACACGTATCTTGCATGGtttgctattggattaactggTAGTTAAAACAActaaatttaaaatatataattatgttgtgttttggtgattaaaccAATGTTCTCATTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC109194838 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039156.1 True 1421 mRNA 0.43 3 26464542 26469614

Neighbor

gene id symbol gene type direction distance location
LOC110502505 LOC106607516 coding upstream 7657 26441097 ~ 26456885 (+)
LOC110502499 chst15 coding upstream 298795 26129692 ~ 26165747 (+)
LOC110503095 nkx1-2 coding upstream 374474 26086792 ~ 26090068 (+)
LOC110502498 fam53b coding upstream 461026 25965470 ~ 26003516 (+)
eef1akmt2 mettl10 coding upstream 507812 25948315 ~ 25956730 (+)
LOC110502508 LOC106607536 coding downstream 1746 26471360 ~ 26529362 (+)
LOC110502507 LOC106607527 coding downstream 45502 26515116 ~ 26545433 (+)
LOC110502510 LOC106607591 coding downstream 95672 26565286 ~ 26603085 (+)
LOC110502511 LOC106607602 coding downstream 225945 26695559 ~ 27146505 (+)
LOC110502514 LOC106608765 coding downstream 910645 27380259 ~ 27398338 (+)
G1848088 NA non-coding upstream 37489 26426847 ~ 26427053 (+)
G1848074 NA non-coding upstream 62694 26401634 ~ 26401848 (+)
G1848062 NA non-coding upstream 78852 26385362 ~ 26385690 (+)
G1848045 NA non-coding upstream 90701 26373557 ~ 26373841 (+)
G1848354 NA non-coding downstream 233901 26703515 ~ 26707704 (+)
G1848401 NA non-coding downstream 297357 26766971 ~ 26819859 (+)
G1848400 NA non-coding downstream 306359 26775973 ~ 26907050 (+)
G1848408 NA non-coding downstream 313768 26783382 ~ 26783783 (+)
G1848531 NA non-coding downstream 499537 26969151 ~ 26971834 (+)
G1845108 NA other upstream 2110296 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 3118053 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 5679339 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 5947656 20358591 ~ 20516930 (+)
G1839872 NA other upstream 6399555 20062064 ~ 20064987 (+)
G1849208 LOC106607606 other downstream 804724 27274338 ~ 27276259 (+)
LOC110502527 LOC106607701 other downstream 1520660 27990245 ~ 27993189 (+)
LOC110502528 bic1a other downstream 1532261 28001291 ~ 28078254 (+)
LOC110502541 LOC106607837 other downstream 2028409 28497576 ~ 28571528 (+)
G1851386 NA other downstream 2573747 29043361 ~ 29075998 (+)

Expression


Co-expression Network