LOC110502507 (LOC106607527)


Basic Information

Item Value
gene id LOC110502507
gene name LOC106607527
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 26515116 ~ 26545433 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580565.2
CGCTAAATCTCATATTGGTGCGCAGTGGAAGTGGATCTTTCCAAATCCCGCTGTATCTGCAGTGGCTGCTCTGCTCTACAATTTTCAGCTAACATATTCAAACGTAATGCAAGTTTTAGAGTAGCCCTGACACTTCTTGTTTACTTCACAATTTTGGGGCAACAGTCCGTTTCACAGTAATCCATCATGTTTTGGTCACTATTGTGCGTAACCGTTTGCTTGGCATCCCTACCTGCCGAAGCACAGATCTCAAATAGGTACGTTGTCGGCTGTCCCAGTCGTTGTGACAAGGCGATGTGCCCACGTATGCCAGTTGAGTGCTTAGCAGGAAAAATCCTCGACCACTGCAACTGCTGCCCGGTGTGCGCCTCTGGAGAGGGCGAAGCGTGCGGCGGCAATGGAAAGCTTGGAGACCCGGTGTGTGCAGAGGGGTTGGAGTGTTCGGTATCGGGCGGAGTGAGCTACTCTGCCACCGTCAGAAGAAGAGGGAAGAGCGGTGTTTGCGCCTGCAAAACTACGGACCCTGTATGTGGCAGCGACGGTGTATCATATCGTAACATCTGCGAGCTCAAGAGAGTCAGCAACCGGGCGCTGAAACTTCAGCAGCCACCTGTTCTGTTCATTCAACGGGGAGCTTGTGGAAAAGCCCAAGACAACCCTAACAGTCTGAGACACAAATACAACTTCATCGCTGACGTGGTGGAGAGGATCGCCCCAGCCGTGGTTCACATTGAACTCTACCGCAAGATGGCATATTCTAAGAGGGAGGTGGCGGTGGCCAGTGGCTCAGGGTTCGTGGTGTCGGAGGATGGACAGATCGTGACCAACGCCCACGTTGTGGCCAATAAGCATAGAGTAAAGGTGGAGCTGAAGAGCGGCGCCACCTACGACGCCAAGATCAAAGACGTGGATGAGAAGTCCGACATCGCACTCCTCAAGATCGACTCACCAATCAAGCTTCCTGTGCTGATGTTGGGGCTTTCGTCAGACCTGAGGCCTGGGGAGTTTGTGGTGGCCATCGGAAGCCCCTTCTCACTCCAGAACACAGTTACCACAGGAATAGTCAGCACAACCCAACGAGGGGGCAAGGAGTTGGGCCTACGCAACTCTGAAATGGAATACATTCAGACAGACGCTATTATCAATTATGGTAATTCAGGAGGCCCTCTGGTGAATCTGGATGGTGAAGTGATCGGGATCAACACTCTGAAAGTGACAGCTGGTATTTCTTTCGCCATTCCCTCCGATAAGATCAGAGAGTTCCTGACTGAATCCTACGACAGACAGTCCCGAGGAAGAGCTGGGGCAAAGAAGAGATACATTGGTGTGAGGATGATGACACTCACTCCAGCGTTGACCAAGGAGCTAAAGGTGCGACACAAAGACTTCCCTGATATCACCTCTGGAGCGTACGTCATGGAGGTGATCTCCAAAACGCCGGCCGCAGCTGGCGGTCTGAAGGAGCATGATGTCATCATCTCCATCAACGGCCAGCGGATTTCCTCTGCAACCGACGTGAGCACCATCATCAAGAAAGATGCCACGCTGCAGGTGGTGGTGCGCCGTAGTAACGAGGACGTCATCATCACCATCGTTCCCATGGAGATCGACCCCTGACCCCCCAGCCCCACCCATGAGCTGATGCTCATTAGCATCACCAATGGACCTTATATGGACATGTGTGTTTAATCGCGCCCCAATCTGTGGCCTTTAGGGCTTTGTGGCATCATGCACATGGACTCCGCCTTGAAAAGGAACGATTGTATAGAGCATCTCAGCAGAGTTGTACTTCCTCATCCATGTGTATTACACTTTTATTATTGTTCGCTTCTAGTACTGTTAACTGTTAAACACTAGCTAGTTGACCTGTTTTGACTTGTTTgttctgtgttttttttatacTGACTGATTGTTCAGATGGAGGCCCACCGTGGCAATGTAAAACGATGTAGAGAGCAGCTCTGAGCGAGTTGTGCAATTATTTTTTTCTAAATTCCTATTCTAAGTACTGTAGTTTTGTGGTGTATTTGTCGATGACACTTACAGAGAAGAGAATAAAGTCTTAAGTGTTTTA

Function

NR:

description
serine protease HTRA1A-like

GO: NA

KEGG:

id description
K08784 HTRA1, PRSS11; HtrA serine peptidase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580565.2 True 2074 mRNA 0.50 9 26515116 26545433

Neighbor

gene id symbol gene type direction distance location
LOC118943853 NA coding upstream 45502 26464542 ~ 26469614 (+)
LOC110502505 LOC106607516 coding upstream 58231 26441097 ~ 26456885 (+)
LOC110502499 chst15 coding upstream 349369 26129692 ~ 26165747 (+)
LOC110503095 nkx1-2 coding upstream 425048 26086792 ~ 26090068 (+)
LOC110502498 fam53b coding upstream 511600 25965470 ~ 26003516 (+)
LOC110502510 LOC106607591 coding downstream 19853 26565286 ~ 26603085 (+)
LOC110502511 LOC106607602 coding downstream 150126 26695559 ~ 27146505 (+)
LOC110502514 LOC106608765 coding downstream 834826 27380259 ~ 27398338 (+)
LOC110502516 LOC106607607 coding downstream 855480 27400913 ~ 27414490 (+)
ecd ecd coding downstream 889379 27434812 ~ 27448641 (+)
G1848088 NA non-coding upstream 88063 26426847 ~ 26427053 (+)
G1848074 NA non-coding upstream 113268 26401634 ~ 26401848 (+)
G1848062 NA non-coding upstream 129426 26385362 ~ 26385690 (+)
G1848045 NA non-coding upstream 141275 26373557 ~ 26373841 (+)
G1848354 NA non-coding downstream 158082 26703515 ~ 26707704 (+)
G1848401 NA non-coding downstream 221538 26766971 ~ 26819859 (+)
G1848400 NA non-coding downstream 230540 26775973 ~ 26907050 (+)
G1848408 NA non-coding downstream 237949 26783382 ~ 26783783 (+)
G1848531 NA non-coding downstream 423718 26969151 ~ 26971834 (+)
G1845108 NA other upstream 2160870 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 3168627 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 5729913 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 5998230 20358591 ~ 20516930 (+)
G1839872 NA other upstream 6450129 20062064 ~ 20064987 (+)
G1849208 LOC106607606 other downstream 728905 27274338 ~ 27276259 (+)
LOC110502527 LOC106607701 other downstream 1444841 27990245 ~ 27993189 (+)
LOC110502528 bic1a other downstream 1456442 28001291 ~ 28078254 (+)
LOC110502541 LOC106607837 other downstream 1952590 28497576 ~ 28571528 (+)
G1851386 NA other downstream 2497928 29043361 ~ 29075998 (+)

Expression


Co-expression Network