LOC110502511 (LOC106607602)


Basic Information

Item Value
gene id LOC110502511
gene name LOC106607602
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 26695559 ~ 27146505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960054.1
AGACACCGTGAGCGCTGGAGAAggcgagagcgagagaaggaacGCCAGGCTCACTATCTGTCTTTGAATATAATAACGGGGTTCCCAACCTTTCTTCCCTTATTTCCCCTTCACTTTCCGTTTTAAATAGTTATTTCCCCTGTTATAAACATAGTTGTTACTTTTTCTTTAGTGTTTCCTGCGTTTTGAGGCTTCTGAACGATAGTTGTGATTTGCAGCGTTTTTGGACATTGTTTGTGGTGCCCCAATTGATTGTCGGACAGCCGAGAATGCTTGGATGAGCTGCTTCGCTAAAAGCCGGAGATGGAGTTGCTGTTGATCTGCCTTTCCCTGTGGATATTGCAATGCAATTCTGCCGGAGCGGACTCCATCATTCATATCGGTGCCATATTTGAGGAAAACGCTGTCAGGGATGACGAAATTTTTCAACTTGCCATTTCTGACCTAAGCCTCAACGACGACATTCTACAAAGCGAGAAAATCACCCACTCTGTAAAACGCATCGAGGCTAACAACCCATTTCAAGCAGTGCAGGAAGCCTGTGAGCTGATGAACCAGGGCATCCTGGCTCTGGTGACGTCTACAGGCTGTGCAGCCGCCAACGCCCTCCAGTCCTTGACCGACGCCATGCACATACCACACCTGTTTATCCAAAGGAACGGCGAGGGCACGCCACGCACCTCCTGCCACCTCAACCCCAGCCCTGATGGGGAGAGCTACACCCTGGCCGCTCGTCCGCCTGCTCGCCTCAACGACGTCATGCTGACCCTGGTCACTGAGCTGCGCTGGCAGAAGTTCATCATCTTCTATGATTCTGACTATGACATCCGTGGGTTGCAAACATTCCTGGACCAGGCGTCTCGGCAGGGTCTGGACGTGTCTCTGCAGAGGGTGGACCGCAATGTGAGCAGGGTGTTCACCAACCTGTTCAGCACCATGCGGACCGAGGAGCTCAATCGCTACCGGGACACTCTGCGGCGGGCCGTGCTGCTCATGAATCCCCGAGGAGCACAGGTGTTCATCCACCAGGCTGTGGAAACCAACCTGGCATCCAAGGACAGCCACTGGGTTTATGCCAATGAGGAGGTGAGTGACACAGAAATCATGGAGCTGGTCCACAGTTCGTTGGGCCGGATGACCGTCATACGGCAGATCTTCCCTCTGTGGAGAGACACCAACATCCGGTGCATGAGGAACAACCACCgcatctcctctctgctctgtgaCCCCCAGGAGGGCTACCTGCAGTCCCTGGAGGTCTCCAACTTGTACCTGTATGACAGTGTGCTGATGCTGGCCAACGCCTTCTACAGTAAGCTGGAGGACAGAAAGTGGCATAGCATGGCTAGTCTGAACTGCATGAGGAAGTCCACCAAGCCCTGGAATGGAGGCTGGTCTATGCTGGACACCATCCAGAAGAGACGGATCACCGGGTTAACAGGAATGATGGACTTCCGTGCCGAAGGTTCTAACTCCCACGTCCAGTTTGAGATCCTGGGGACCAGCTACAGTGAGACGTTTGGGAAAGATGTCAAGCGGttGGCGACTTGGGACTCAACTCGTGGGCTGAACGGTAGTCTAAAGGAGAGTCGGATAGAGAACGGCATGCAAGGAGTGACGGTCAAGGTGGTAACATTACTAGAGGAACCCTTTGTGATGGTAGCTGAGAACATTCTTGGGCAACCTAAACGCTACAAAGGTTTCTCCATTGATGTTCTGGATGCTCTGGGCAAGATCCTGGGCTTCAAGTATGAGATTTACCAGGTGGCCGATGGAAAGTATGGAACCCCTACCTTCAACGGCTCCTGGAACGGCATGATAGGAGAGCTTATCAGTAAGCGAGCAGACTTGGCAGTATCAGCCATCACTATAActccagagagggagagtgtggtgGACTTCAGCAAGCGCTACTTGGACTACTCTGTGGGGATTCTGATGAGGAAGTCTGAGGAGAAGATCAATATCTTCTCTCTCCTGGCGCCCTTTGACCTGGCCGTTTGGGCATGCATCGCAGCCGCCATCCCCGTGGTTGGTGTCATGATCTTCATCCTAAGGCGGGTCCAGTCGGTCCGTCCTGCAGGGGGACACCAGGCCACCTCTGTGTCCACCTCCCTCCAGAGCGCCATCTGGATTGTCTATGGAGCTTTTGTGCAGCAAGGGGGAGACTCCATCCTGGGTTCTGTGGCTCTACGTATCGTAATGGGCAGCTGGTGGCTTTTCACCCTCATTGTGTGTTCATCCTACACGGCCAACCTAGCAGCCTACCTCACGGTATCCCGCATGGACAACGCTGTTCGGACATTCCAGGACTTGTCCAAACAGATGGACCTAGCCTACGGAACAGTGAGAGACTCAGCCGTGTATGAGTACTTCAGAGCCAAAGGCACCAACGCTCTGGAGCAGGACAGCACCTTCGCTGAGCTCTGGAGAACCATCAACAAGAATAACGGACACGAACACTCAGTCTCCAGCCCATCTGAAGGCATCCGCAAGGCCAAGAGAGATTCCTTTGCCTTCCTGTGGGACATGGCTGTGGTGGAGTATGCTGCTCTGACAGATGATGACTGCACCCTGACAGTGACAGGCAACAGTATGAGTAGTAAGGGCTATGGCCTGGCTCTGCAACATGGCAGCCCCTACAGAGACCTCTTCTCCCAGAAGATCCTGGATCTGCAGGAGAAAGGGGACCTGGACATCCTGAAGCAGAAGTGGTGGCCCAGGAAGGGTCGCTGTGACCTGGACAGCCACTTGGAGGCCCAGCCAGAGGGCAGGTCCCTGAGGCTCCAAAGCTTCGCTGGGGTCTTCTGCATCCTGGCAGCAGGGCTGCTGCTGGCCTGCCTGGTGGCCGCCCTGGAGACCTGGTGGAGCAGCAACCGCTGCCGGCGTGAGCAGCCCAAAGAGgacaaAGAGGTGAATCTAGAGCAGGTCCACAAGCGTTTGAACAGCCTCCTGGATGAGGACATGGTGCACAAGCAGCTGCCGGGCCAATCTATCGAGATCTCTGCCCTGGACATCAGCAGCATGCAGCCCAGCCAGTCCCTGGAAGGCCTGCCTTCACGGGACCACTACCTGGGCCATCACAGGGAGTCGGTCTCTGTGACCACTTTCCTCCAGGAGGGTCAAGGAGCAGGAAGGACACTTGGCAGGGGCACTGGCAGAACCCTCCCCCTACCCCTCAGCAGCGCCACCATGCCCGCTATCCGCTGCAAACACAGGGCACCCAACGGGGGGCTCTGCCAACAGAGCCCTGTCAAGACACCAATGCCAAAGTCATACCAATCAGGGCCTGGAAGAACCATTCCAGAAGCCATTGATGTAAGCCATGGGACTTCAATCTGACTACTCAGCCTCAGCGCAATCACAGACACTCAAGCTCCGTTTATACTAGGTTCTAACATGCATCTTTTTTcctccacattctgattgtgcccacattttttgACAGGTGTAGATAATGGAAAGATGctttgtgatctgattgtgagcAGATGGCTATCTTACAAGTGTAGACGGATCTGGACAGTGAAACCATTTACGTCATCATTACACAACCCTCTGAAATCA

Function

NR:

description
glutamate receptor ionotropic, delta-1-like

GO: NA

KEGG:

id description
K05206 GRID1; glutamate receptor delta-1 subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960054.1 True 3567 mRNA 0.54 16 26695559 27146505

Neighbor

gene id symbol gene type direction distance location
LOC110502510 LOC106607591 coding upstream 92474 26565286 ~ 26603085 (+)
LOC110502507 LOC106607527 coding upstream 150126 26515116 ~ 26545433 (+)
LOC110502508 LOC106607536 coding upstream 166197 26471360 ~ 26529362 (+)
LOC118943853 NA coding upstream 225945 26464542 ~ 26469614 (+)
LOC110502505 LOC106607516 coding upstream 238674 26441097 ~ 26456885 (+)
LOC110502514 LOC106608765 coding downstream 233754 27380259 ~ 27398338 (+)
LOC110502516 LOC106607607 coding downstream 254408 27400913 ~ 27414490 (+)
ecd ecd coding downstream 288307 27434812 ~ 27448641 (+)
LOC110503096 LOC106577060 coding downstream 327146 27473651 ~ 27485960 (+)
LOC110502521 LOC106607666 coding downstream 342708 27489213 ~ 27505393 (+)
G1848088 NA non-coding upstream 268506 26426847 ~ 26427053 (+)
G1848074 NA non-coding upstream 293711 26401634 ~ 26401848 (+)
G1848062 NA non-coding upstream 309869 26385362 ~ 26385690 (+)
G1848045 NA non-coding upstream 321718 26373557 ~ 26373841 (+)
G1849101 NA non-coding downstream 33629 27180134 ~ 27182928 (+)
G1849129 NA non-coding downstream 53282 27199787 ~ 27200000 (+)
G1849299 NA non-coding downstream 275699 27422204 ~ 27424989 (+)
G1849304 NA non-coding downstream 302554 27449059 ~ 27456847 (+)
G1845108 NA other upstream 2341313 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 3349070 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 5910356 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 6178673 20358591 ~ 20516930 (+)
G1839872 NA other upstream 6630572 20062064 ~ 20064987 (+)
G1849208 LOC106607606 other downstream 127833 27274338 ~ 27276259 (+)
LOC110502527 LOC106607701 other downstream 843769 27990245 ~ 27993189 (+)
LOC110502528 bic1a other downstream 855370 28001291 ~ 28078254 (+)
LOC110502541 LOC106607837 other downstream 1351518 28497576 ~ 28571528 (+)
G1851386 NA other downstream 1896856 29043361 ~ 29075998 (+)

Expression


Co-expression Network