LOC110502513 (LOC106607606)


Basic Information

Item Value
gene id LOC110502513
gene name LOC106607606
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27252967 ~ 27310171 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960214.1
ATAAATTATTTCTTGAGTCCTCAGCTGAAGAAAGTGGTCGACTTTCTGTATTCTTTGTCCTTTGTTTTGCACCACATCATGGTACAACTGCAGTAAGATTCAGTTATTTAAAGACGGGCAATCAATTTTATGCAGTCTGTCTTTCTGATGTTGTCTCGGTTCATTAATGGCTTGTTTGAATAGTGTTGCCAAATATTTATGTCCCTTCCTTTCTTGCTCTGTTTGAAAGGGAAattgcgtgtctgtctgtgttatgtGGACGCTAACGGGATGTCCCATTTTGAACGCTCAGAGAGGGGGGGACGACAAGGTCACTGGAGGAGAAGGCAGCATCACTGGAATGGACCGGATCACTTCCACAATGACACCAGGGATCCAGTGTTCCAGCATTATGATGGTTATGCTGGCCCTGTGGGGTTCAGGGTAGGCCCCCGGCCCTTTCCTCCCGTAGGGAGACACAATGGACACACGGGGGCGCTGGACGAGCTCACACTCAAACATATGGCCCAGGACTGCAGCTCAGTGAAAAACCAGCTGCTTACACTCAAGAGTTTattacagATGGAGGACGGTGGCCCAGAGGTTGTTGAGGGCGGTGAAGAGGATAACAGCACGACCCTACAGTTGGAGGAGCTAATGAAGGAGGTGTGGAAGCTCAGGGAGGAGCTGAGGAATAAGGAGAGGACAATCGCTCAGCTCACACTACAGCAACAGCAGCTACAGCAACAGGGGcaTCCTCATGCTGCCCAGTCCGGGAGGGGTCACTGCCACAAGAGGACACAGTCACTCGGGGGGGACAGACGAACTCACCACGACAAAGCCACACAGACCTCTTGGAGAGGACAAGGACACAGCCAAGcgCCACAAATACAGCCTTCCAGCCCCAGCCACCACGAGCACCTCACCCAAGAAAGACTAGTAAAAACAGCCCACACCGAGGGCCACAGTGACCcccagagagggaggaggaccaGGGAAGATGGATCCCACTGCACAGACTCTGACCCACCCACTGGAAGCCTGGCCATGGGTGTGGACACTCCACCAGTGCCTGACCCAGATGAATTGAGTGTGCTGCTTAGCACCCAGCTCAACAAACATATCAGAGAGTGGCCTGGAACCACCCCCAGTCCCACCCAGGGGCTTGCTGCAGCCAGCAGCCCAACCCCAAGAGCTCTGTCCAGGCCAGAGGGAGGGCAGCGAGCCTCTCCATTGGGGCCACAGGGCCCTGGCTGCCCTCGCATCCTGCAGCCGCCACGCCTCCACAAGCGTGTGTCCATCCTGGCTCTGCCTCAGGGGGGCACTAATGGCTCTCTTCTTCGATCGGAGTCTTCAGCGCTGCTGGCCAACCACAGGACCAAGCAGCTGCCGCCTCCCTCCAGGGGCCTGCCCTGCTTCAATTCTGGTCCCCAGGCGGTGAGCCCGTCTCTGGACCACGGGGTGCTCGCTAAGCCCCACGCTCTGGGGGTCAGGAGGGACCTTGGGAGAACCAGCCCTCCTAGCCCTAATCTGGAAATGCCAGACCTGGGACTGCTCAGAGCCAGAGTCTTGGTTCCCCCCAGCCACTCACGCATCCCAATGCCAAAGATCCACTGAAGTGTTCACATGAATCAAACATGacatgttatatactgtataacatccctcctcttccacctcctcgtGGTTCCTGCTCACCATGTGTGTGTCCATATGTGCATGTGCCCACAGCTCCTTATGGACATTCAGGAACTGCCCTTAACTATTGTTTGAACTTCTGCTGAACTGAACAGAATATGTAGCATAGTCCTGTCTTAAAATTTACGAAATGCAAAGGTACAGTGCACATCTATTCAAAATGGCACCTACAGGTTATGACTGAGATACACTGAAGGACTGTTTTATCCTTTATAAAATGTCCAGTCACTTGCTAAGCAGCCTTTTATTGCACATTGTCTTATGCAGAAAAAGAATGACTAACATTCATAGTTTCTCTTTGCTAATCTctcacatgtactgtacatgttttttGAAAGAATGTTCCACTCAACTCTACTCAAACTCACATGGGTCCTTCCATTGAAACTGCAGCACATGGTTTGACTATAGGCTTACATGACCTCAGAAATGTTAAATTCCTCCCAGAGCGTAAAAAATGAATGAAAGAAAAAAAGCAGATTGGGGAAAGAAATAAGGAGTGGAGTTTTCTGCTTAAACAGGGAAATGGGTTTAAAGAACAACCGTTCACTAGAAAGTTTAAAGTATTTCCTCTAGAGTATGTCCTTCCACTAAACTCCCTGATGTACCTCTTTCAGACCAAGTAACAGGTACCACTAAACTCCCTGATGTACCTCTTTCAGACCAAGTGACAGGTACCACTAAACTCCCTGATGTACCTCTTTCAGACCAAGTGACAGGTACCACTAAACTCCCTGATGTACCTCTTTCAGACCAAGTGACAGGTACCACTAAACTCCCTGATGTACCTCTTTCAGACCAAGTGACAGGTACCACTAAACTCCCTGATGTACCTCTTTCAGACCAAGTGACAGGCACCACTAAA
>XM_036960215.1
GGCTGTGGCAGCCAAGCAGGAAGGGGAAAGGAAGAagggagaagggaaagggagGCCCTGCTATTTTCTTCAGCAGGCAGGCTCTAGCTCCAATGACAGGAGAGGCCCAGTggtctcttccctccctccccatgcTGGTGACACCCAGCCTGGCCACGAACACAGCCACCccagcctctccctccctctctggcccCAGCTCCTAGAGAATTTCTCAGAAAACAGGGTGGAGGAGTTTCTCTAGCCCTTTAAACAGCTGACTGACACTTTAGCCCACACTGTTTTCTCACACTTTCTTATAGTTGGATTTCAGTTTTGTACTGTTGAGAACGAGGTTATGGATGTAGCAGAGAGTCTTGGAATGTAGCTGAGCTGACTATTTGGACAGGGTCGTCATCAGTTGCGACGCTAACGGGATGTCCCATTTTGAACGCTCAGAGAGGGGGGGACGACAAGGTCACTGGAGGAGAAGGCAGCATCACTGGAATGGACCGGATCACTTCCACAATGACACCAGGGATCCAGTGTTCCAGCATTATGATGGTTATGCTGGCCCTGTGGGGTTCAGGGTAGGCCCCCGGCCCTTTCCTCCCGTAGGGAGACACAATGGACACACGGGGGCGCTGGACGAGCTCACACTCAAACATATGGCCCAGGACTGCAGCTCAGTGAAAAACCAGCTGCTTACACTCAAGAGTTTattacagATGGAGGACGGTGGCCCAGAGGTTGTTGAGGGCGGTGAAGAGGATAACAGCACGACCCTACAGTTGGAGGAGCTAATGAAGGAGGTGTGGAAGCTCAGGGAGGAGCTGAGGAATAAGGAGAGGACAATCGCTCAGCTCACACTACAGCAACAGCAGCTACAGCAACAGGGGcaTCCTCATGCTGCCCAGTCCGGGAGGGGTCACTGCCACAAGAGGACACAGTCACTCGGGGGGGACAGACGAACTCACCACGACAAAGCCACACAGACCTCTTGGAGAGGACAAGGACACAGCCAAGcgCCACAAATACAGCCTTCCAGCCCCAGCCACCACGAGCACCTCACCCAAGAAAGACTAGTAAAAACAGCCCACACCGAGGGCCACAGTGACCcccagagagggaggaggaccaGGGAAGATGGATCCCACTGCACAGACTCTGACCCACCCACTGGAAGCCTGGCCATGGGTGTGGACACTCCACCAGTGCCTGACCCAGATGAATTGAGTGTGCTGCTTAGCACCCAGCTCAACAAACATATCAGAGAGTGGCCTGGAACCACCCCCAGTCCCACCCAGGGGCTTGCTGCAGCCAGCAGCCCAACCCCAAGAGCTCTGTCCAGGCCAGAGGGAGGGCAGCGAGCCTCTCCATTGGGGCCACAGGGCCCTGGCTGCCCTCGCATCCTGCAGCCGCCACGCCTCCACAAGCGTGTGTCCATCCTGGCTCTGCCTCAGGGGGGCACTAATGGCTCTCTTCTTCGATCGGAGTCTTCAGCGCTGCTGGCCAACCACAGGACCAAGCAGCTGCCGCCTCCCTCCAGGGGCCTGCCCTGCTTCAATTCTGGTCCCCAGGCGGTGAGCCCGTCTCTGGACCACGGGGTGCTCGCTAAGCCCCACGCTCTGGGGGTCAGGAGGGACCTTGGGAGAACCAGCCCTCCTAGCCCTAATCTGGAAATGCCAGACCTGGGACTGCTCAGAGCCAGAGTCTTGGTTCCCCCCAGCCACTCACGCATCCCAATGCCAAAGATCCACTGAAGTGTTCACATGAATCAAACATGacatgttatatactgtataacatccctcctcttccacctcctcgtGGTTCCTGCTCACCATGTGTGTGTCCATATGTGCATGTGCCCACAGCTCCTTATGGACATTCAGGAACTGCCCTTAACTATTGTTTGAACTTCTGCTGAACTGAACAGAATATGTAGCATAGTCCTGTCTTAAAATTTACGAAATGCAAAGGTACAGTGCACATCTATTCAAAATGGCACCTACAGGTTATGACTGAGATACACTGAAGGACTGTTTTATCCTTTATAAAATGTCCAGTCACTTGCTAAGCAGCCTTTTATTGCACATTGTCTTATGCAGAAAAAGAATGACTAACATTCATAGTTTCTCTTTGCTAATCTctcacatgtactgtacatgttttttGAAAGAATGTTCCACTCAACTCTACTCAAACTCACATGGGTCCTTCCATTGAAACTGCAGCACATGGTTTGACTATAGGCTTACATGACCTCAGAAATGTTAAATTCCTCCCAGAGCGTAAAAAATGAATGAAAGAAAAAAAGCAGATTGGGGAAAGAAATAAGGAGTGGAGTTTTCTGCTTAAACAGGGAAATGGGTTTAAAGAACAACCGTTCACTAGAAAGTTTAAAGTATTTCCTCTAGAGTATGTCCTTCCACTAAACTCCCTGATGTACCTCTTTCAGACCAAGTAACAGGTACCACTAAACTCCCTGATGTACCTCTTTCAGACCAAGTGACAGGTACCACTAAACTCCCTGATGTACCTCTTTCAGACCAAGTGACAGGTACCACTAAACTCCCTGATGTACCTCTTTCAGACCAAGTGACAGGTACCACTAAACTCCCTGATGTACCTCTTTCAGACCAAGTGACAGGTACCACTAAACTCCCTGATGTACCTCTTTCAGACCAAGTGACAGGCACCACTAAA
>XM_036960216.1
AATTATTTCTTGAGTCCTCAGCTGAAGAAAGTGGTCGACTTTCTGTATTCTTTGTCCTTTGTTTTGCACCACATCATGGTACAACTGCAGTAAGATTCAGTTATTTAAAGACGGGCAATCAATTTTATGCAGTCTGTCTTTCTGATGTTGTCTCGGTTCATTAATGGCTTGTTTGAATAGTGTTGCCAAATATTTATGTCCCTTCCTTTCTTGCTCTGTTTGAAAGGGAAattgcgtgtctgtctgtgttatgtGGACGCTAACGGGATGTCCCATTTTGAACGCTCAGAGAGGGGGGGACGACAAGGTCACTGGAGGAGAAGGCAGCATCACTGGAATGGACCGGATCACTTCCACAATGACACCAGGGATCCAGTGTTCCAGCATTATGATGGTTATGCTGGCCCTGTGGGGTTCAGGGTAGGCCCCCGGCCCTTTCCTCCCGTAGGGAGACACAATGGACACACGGGGGCGCTGGACGAGCTCACACTCAAACATATGGCCCAGGACTGCAGCTCAGTGAAAAACCAGCTGCTTACACTCAAGAGTTTattacagATGGAGGACGGTGGCCCAGAGGTTGTTGAGGGCGGTGAAGAGGATAACAGCACGACCCTACAGTTGGAGGAGCTAATGAAGGAGGTGTGGAAGCTCAGGGAGGAGCTGAGGAATAAGGAGAGGACAATCGCTCAGCTCACACTACAGCAACAGCAGCTACAGCAACAGGGGcaTCCTCATGCTGCCCAGTCCGGGAGGGGTCACTGCCACAAGAGGACACAGTCACTCGGGGGGGACAGACGAACTCACCACGACAAAGCCACACAGACCTCTTGGAGAGGACAAGGACACAGCCAAGcgGGTTTGCTGCCCACCCCCTTCTTCTCCCCCGGGCAGGGTCTGCCCCGCACCAGCATGCCCCAGCGCAGACAGACCACAAATACAGCCTTCCAGCCCCAGCCACCACGAGCACCTCACCCAAGAAAGACTAGTAAAAACAGCCCACACCGAGGGCCACAGTGACCcccagagagggaggaggaccaGGGAAGATGGATCCCACTGCACAGACTCTGACCCACCCACTGGAAGCCTGGCCATGGGTGTGGACACTCCACCAGTGCCTGACCCAGATGA
>TU2116917
AGTGGAGTTTTCTGCTTAAACAGGGAAATGGGTTTAAAGAACAACCGTTCACTAGAAAGTTTAAAGTATTTCCTCTAGAGTATGTCCTTCCACTAAACTCCCTGATGTACCTCTTTCAGACCAAGTGACAGGCACCACTAAACTCACAGTGAACTCCTGAACACTGAGTAACATAGGTTTACCATATAGTATCTACTAGATAGTTTTGGTTCGGTAGTGGACTGATTAAGACAACATTATTGAACATCACAGGTTTTTGTGTGTTTTGAGTTATCAGGGCTAAGTTCAGTTTGAGGATTTGAGGAGTTTGAGGGTTGTGTTTATCTCCTCTTCAGAACAATGGTTAATGTTTGAATGCCTCTAGAAATGGAGAGTGTGTTAAATGGTTTCTGACAGAGACTATGGCAGCTTCCATGCATTGGGGCTATGGCTGTAGGTTTATGACTGTGTCACTCTCTGTTTTACAATACCCAATAATACAAACTACACATGCACACATGAAAAAAAAGCATACACACAATTCTGGAGAGTCCCCAGGGACATTGATCCACCTGTCCCCTACGGAAAAACAAGATggctgcctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgc
>TU2116920
tttcatagttttgatgtcttcactattatcctacaatgtaaaaaatagtaaaaataaagaaaaaccctggaatgagtaggtgtttccaaacctttgactggtactatacgtCATACCTCCATTGTCTTTTCTCTGTGCAGGGTTTGCTGCCCACCCCCTTCTTCTCCCCCGGGCAGGGTCTGCCCCGCACCAGCATGCCCCAGCGCAGACAGAGTGAGTCACTACCCCC
>TU2116919
ATACATTGTTTAACGACAAACTGTCAATTACCAACTGATCCACTGCTATAATCCAAACTTCAAAACCCACTGGGGATGACCTACAAGCTCGTAGAGTTAATAGGGTCTACTAGTTATGTCTAGACTAGAGACTGTTTTTGTATCTTCATTAGAACCCAAAGACTCAGAAATAAGTTCCACTCATGCAGTTTTTGAATACCAACTCACCCTAGTAGatcattcatttgttattgttCTTTTCCTGATACAGTAGtggtaactctctctctcctcccccagcaTCCTCATGCTGCCCAGTCCGGGAGGGGTCACTGCCACAAGAGGACACAGTCACTCGGGGGGGACAGACGAACTCACCACGACAAAGCCACACAGACCTCTTGGAGAGGACAAGGACACAGCCAAGcgg
>TU2116915
CTTTCTTATAGTTGGATTTCAGTTTTGTACTGTTGAGAACGAGGTTATGGATGTAGCAGAGAGTCTTGGAATGTAGCTGAGCTGACTATTTGGACAGGGTCGTCATCAGTTGCGACGCTAACGGGATGTCCCATTTTGAACGCTCAGAGAGGGGGGGACGACAAGGTCACTGGAGGAGAAGGCAGCATCACTGGAATGGACCGGATCACTTCCACAATGACACCAGATGGAGGACGGTGGCCCAGAGGTTGTTGAGGGCGGTGAAGAGGATAACAGCACGACCCTACAGTTGGAGGAGCTAATGAAGGAGGTGTGGAAGCTCAGGGAGGAGCTGAGGAATAAGGAGAGGACAATCGCTCAGCTCACACTACAGCAACAGCAGCTACAGCAACAGGGGAGCTGTTGCCTGAGAATCATGTCATAAGCTGCTTCCAACGtcattttggagaatttggcagtacgtccgcagaccaagtgtaaccacgccagccaaggacctccacattcggcttcttcacctgcggggtcgtctgagaccagtcacccggacagctggacccttttgtggggaaaaactaattttGATTGGCTGCgtctctgcccagtcatgtgaaatccacaaaTTAAGGCCTAATTTATTGATCTTAAATTgagtgatttccttatatgaactgtaactcagt

Function

NR:

description
serine-rich coiled-coil domain-containing protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960214.1 False 2542 mRNA 0.50 7 27274552 27309747
XM_036960215.1 False 2688 mRNA 0.52 7 27274552 27310171
XM_036960216.1 False 1134 mRNA 0.54 8 27276030 27309744
TU2116917 False 663 lncRNA 0.42 4 27252967 27274918
TU2116920 False 229 lncRNA 0.47 1 27280475 27280703
TU2116919 False 409 lncRNA 0.46 1 27292049 27292457
TU2116915 True 683 lncRNA 0.50 5 27296034 27309880

Neighbor

gene id symbol gene type direction distance location
cuzd1.2 LOC106607512 coding downstream 808662 26457010 ~ 26465890 (-)
LOC110502503 hmx3 coding downstream 867998 26403613 ~ 26406554 (-)
LOC110502502 hmx2 coding downstream 876419 26387522 ~ 26398133 (-)
LOC110502501 gpr26 coding downstream 1044006 26226630 ~ 26230546 (-)
LOC110502496 fam175b coding downstream 1326566 25939726 ~ 25947986 (-)
LOC110502517 LOC106607615 coding upstream 113721 27423892 ~ 27435842 (-)
si:ch211-248a14.8 LOC106608780 coding upstream 139451 27449622 ~ 27453880 (-)
LOC110502526 LOC106607693 coding upstream 539933 27850104 ~ 27859306 (-)
LOC110502525 LOC106607696 coding upstream 549921 27860092 ~ 27983425 (-)
LOC110502532 NA coding upstream 805424 28115595 ~ 28120442 (-)
G1848704 NA non-coding downstream 649921 26611216 ~ 26624631 (-)
G1848675 NA non-coding downstream 687313 26577284 ~ 26587239 (-)
G1848261 NA non-coding downstream 728182 26544808 ~ 26546370 (-)
G1848203 NA non-coding downstream 806350 26467965 ~ 26468202 (-)
G1848195 NA non-coding downstream 826711 26446243 ~ 26447841 (-)
G1849410 NA non-coding upstream 7248 27317419 ~ 27317619 (-)
G1849416 NA non-coding upstream 12182 27322353 ~ 27322830 (-)
G1849493 NA non-coding upstream 125955 27436126 ~ 27523460 (-)
G1849524 NA non-coding upstream 179140 27489311 ~ 27493373 (-)
G1849555 NA non-coding upstream 244770 27554941 ~ 27555153 (-)
G1846858 NA other downstream 1834165 25439807 ~ 25440387 (-)
LOC110502462 LOC106607169 other downstream 3928781 23344353 ~ 23358461 (-)
G1843946 NA other downstream 4041129 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other downstream 4056282 23213905 ~ 23218749 (-)
G1841959 NA other downstream 5902753 21345514 ~ 21371799 (-)
G1850441 NA other upstream 764754 28074925 ~ 28078251 (-)
LOC110502553 NA other upstream 1614568 28919846 ~ 28932600 (-)
LOC110502574 LOC106608078 other upstream 3841438 31151609 ~ 31239202 (-)
G1854905 NA other upstream 3907426 31217597 ~ 31218171 (-)
G1855326 NA other upstream 4669826 31979997 ~ 31981333 (-)

Expression


Co-expression Network