LOC110502514 (LOC106608765)


Basic Information

Item Value
gene id LOC110502514
gene name LOC106608765
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27380259 ~ 27398338 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580582.2
tctcctcgaatcagggactgatttagacctgggacaccagctgTGTGCTATTACTTATAagacagaaaaccagcaggctttggacttcgtagggtaagagttgaatacccctgcggCCTACTCAGGGGATAATGTGAACTGAAGTGAGAGAACATTTCGGTAAGAGGAGGAGGCagaaagaagggaggagggagagataaggTGAAAATGTAAAAATAGACAATCaaataaaaggagagagaaagtatGGGAGCAGATTTGGACCATAAAAACAGATACCTTCAAAAGGTGTGTGAAAAGGAGAGGGAAAGCTATGCAGCTGGCAAGACGCAGGAGAACAAGGAAAATAGCAACGGAGGACAGAAGCAAGTGAAACTGCCTGCCATCTTGACCACAATGCACCTGACTATAAACCTGCTCTGCCTGCTGGTCCTGACCTTTCACCTTGACCTGGCCATGGGAGGAAGATCCCAGCGCAAACAAAGGCAGGCTGAGGACAGTCTAAGACCATACCTGGGAAGAGTGGACCCAGTCCAACTGTGTGAGCTGCTGAAGTGTCACAGTCCAATGGGCTCCTGGTGCCAAGTGGTGCAGGACAACGAAGTCCTCGTCCCAAAGTGTGTGTGTCCGAAGACCTGCCCACGGCAGGGGGCACCAGTGTGCAGTGTTCTGGGAAAGACCTATGGGAATGAGTGTCTGCTGCATAGAGAAGCCTGCCGCAAGAGACGTCGCATTGGACTGGCTCATATAGGACCCTGTCTTGTTCCCAAGGCAAACTGCACAGAGGAGGAGTATGGCCAATTCCCATACCGTCTAATGGACTGGTTCCTCCTGTTAAGTCGTATGGGAAAGTCTTATGCCCCCTATGCCCTGCCCCAGAGCTGCCTGAGCCATACCCAGCGCACCCAACTAGCCCAGCGGCGGTTTTCCCTGCTGGACAAGAACAAGGACGGGAAGCTGAGCCAGAGGGACCTGAGGAAGTTGCGCTACAAGAGGATGCCTCTCGAGCAATGTGCTAACTTCTTCTTCCAGTCATGTGACCATAACAAGAACAGTAAGGTGACCCTGCATGAATGGATCTCCTGTCTGGTGGATCGCTCAGAGAGCTggttccaaaacttcatgtctATGCAAATGGGATCCGGTAAGCTGTGTCCCATGAAGACCGACAACCACCTTTGACCTGGACAAGAACACATCTCCTCTCGCTTGTCTACATGTGCATCTGTTTATCACTGCTATCTACAATAATAAGCATACAAAATGATCCACTTTTCTCCACTTCCAGCATCATACTCCCCTAACTGTCACACTCAGTACTGTGTTTGTTTTTGACTTATGACATCTGTTTTCTGACGGTCACTGTACATTCATCTGTGTGGAGAAATGGCCTGTAATAAATGTCTGAGACCTGGCTGCCCCATTAGTGTCTGTATGGGATGGCCTGAGGAGAGAGGGGCTCATTAAGAACCAGGAGGACGTGTCGCATGGATCAAGCATCCAATTACTGtaggaaagagaggtagagaaagactCAGAGACAGTTGGATACTATGATAGAGGGAAGAGATGGAAAAGAGATGATGGAAGGCGAGGAAGCTTAGTGTGAGACGCCGTGACCAGGGAAGGGAACGAGGGATAATGGAGGGGAGGGATCAGAAATTAGAAAAAGAACGGGAGGGGGATGGAATAGTCGGAAAGAAGTAAAGTTAGGGGAAAAATAAAGTATGTGAGAAGAGGTTTGATGTGGGGAATATTAGCCACAGCGTATGATATTTGTCAAGAGGAAATTTTGAAATAATGACTTCTTGTATGTCAAAGATCCAAATCATTAGCCATTAACAGGCTTATACATTCCAGTACATTCTATCATATTGAGGTATTTCAGCTGTTGCCTCAGCTTTTCCATAGCTCtagttttt
>XM_036960762.1
cactcactctcttcctctttttccatcataggtacagttAAGCCCTATTCATACACTCTCTCACAATAGTTACCTTTACCTATGTCTTAAATAGCATTTTCTGTTTTTGTCTAATTGATTGACTGCCTAATGACTGAAGTATTTTGCTCTGAGTATTTTGGGTCTGCTGATGTGGCCTCTCAACAGGGGGATAATGTGAACTGAAGTGAGAGAACATTTCGGTAAGAGGAGGAGGCagaaagaagggaggagggagagataaggTGAAAATGTAAAAATAGACAATCaaataaaaggagagagaaagtatGGGAGCAGATTTGGACCATAAAAACAGATACCTTCAAAAGGTGTGTGAAAAGGAGAGGGAAAGCTATGCAGCTGGCAAGACGCAGGAGAACAAGGAAAATAGCAACGGAGGACAGAAGCAAGTGAAACTGCCTGCCATCTTGACCACAATGCACCTGACTATAAACCTGCTCTGCCTGCTGGTCCTGACCTTTCACCTTGACCTGGCCATGGGAGGAAGATCCCAGCGCAAACAAAGGCAGGCTGAGGACAGTCTAAGACCATACCTGGGAAGAGTGGACCCAGTCCAACTGTGTGAGCTGCTGAAGTGTCACAGTCCAATGGGCTCCTGGTGCCAAGTGGTGCAGGACAACGAAGTCCTCGTCCCAAAGTGTGTGTGTCCGAAGACCTGCCCACGGCAGGGGGCACCAGTGTGCAGTGTTCTGGGAAAGACCTATGGGAATGAGTGTCTGCTGCATAGAGAAGCCTGCCGCAAGAGACGTCGCATTGGACTGGCTCATATAGGACCCTGTCTTGTTCCCAAGGCAAACTGCACAGAGGAGGAGTATGGCCAATTCCCATACCGTCTAATGGACTGGTTCCTCCTGTTAAGTCGTATGGGAAAGTCTTATGCCCCCTATGCCCTGCCCCAGAGCTGCCTGAGCCATACCCAGCGCACCCAACTAGCCCAGCGGCGGTTTTCCCTGCTGGACAAGAACAAGGACGGGAAGCTGAGCCAGAGGGACCTGAGGAAGTTGCGCTACAAGAGGATGCCTCTCGAGCAATGTGCTAACTTCTTCTTCCAGTCATGTGACCATAACAAGAACAGTAAGGTGACCCTGCATGAATGGATCTCCTGTCTGGTGGATCGCTCAGAGAGCTggttccaaaacttcatgtctATGCAAATGGGATCCGGTAAGCTGTGTCCCATGAAGACCGACAACCACCTTTGACCTGGACAAGAACACATCTCCTCTCGCTTGTCTACATGTGCATCTGTTTATCACTGCTATCTACAATAATAAGCATACAAAATGATCCACTTTTCTCCACTTCCAGCATCATACTCCCCTAACTGTCACACTCAGTACTGTGTTTGTTTTTGACTTATGACATCTGTTTTCTGACGGTCACTGTACATTCATCTGTGTGGAGAAATGGCCTGTAATAAATGTCTGAGACCTGGCTGCCCCATTAGTGTCTGTATGGGATGGCCTGAGGAGAGAGGGGCTCATTAAGAACCAGGAGGACGTGTCGCATGGATCAAGCATCCAATTACTGtaggaaagagaggtagagaaagactCAGAGACAGTTGGATACTATGATAGAGGGAAGAGATGGAAAAGAGATGATGGAAGGCGAGGAAGCTTAGTGTGAGACGCCGTGACCAGGGAAGGGAACGAGGGATAATGGAGGGGAGGGATCAGAAATTAGAAAAAGAACGGGAGGGGGATGGAATAGTCGGAAAGAAGTAAAGTTAGGGGAAAAATAAAGTATGTGAGAAGAGGTTTGATGTGGGGAATATTAGCCACAGCGTATGATATTTGTCAAGAGGAAATTTTGAAATAATGACTTCTTGTATGTCAAAGATCCAAATCATTAGCCATTAACAGGCTTATACATTCCAGTACATTCTATCATATTGAGGTATTTCAGCTGTTGCCTCAGCTTTTCCATAGCTCtagttttt
>TU2116808
GGTCATGTGACCATAACAAGAACAGTAAGGTGACCCTGCATGAATGGATCTCCTGTCTGGTGGATCGCTCAGAGAGCTggttccaaaacttcatgtctATGCAAATGGGATCCGGTAAGCTGTGTCCCATGAAGACCGACAACCACCTTTGACCTGGACAAGAACACATCTCCTCTCGCTTGTCTACATGTGCATCTGTTTATCACTGCTATCTACAATAATAAGCATACAAAATGATCCACTTTTCTCCACTTCCAGCATCATACTCCCCTAACT

Function

NR:

description
SPARC-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580582.2 False 1922 mRNA 0.48 10 27380259 27398338
XM_036960762.1 False 1984 mRNA 0.47 9 27381164 27398338
TU2116808 True 276 lncRNA 0.45 2 27397302 27397722

Neighbor

gene id symbol gene type direction distance location
LOC110502511 LOC106607602 coding upstream 233754 26695559 ~ 27146505 (+)
LOC110502510 LOC106607591 coding upstream 777174 26565286 ~ 26603085 (+)
LOC110502507 LOC106607527 coding upstream 834826 26515116 ~ 26545433 (+)
LOC110502508 LOC106607536 coding upstream 850897 26471360 ~ 26529362 (+)
LOC118943853 NA coding upstream 910645 26464542 ~ 26469614 (+)
LOC110502516 LOC106607607 coding downstream 2575 27400913 ~ 27414490 (+)
ecd ecd coding downstream 36474 27434812 ~ 27448641 (+)
LOC110503096 LOC106577060 coding downstream 75313 27473651 ~ 27485960 (+)
LOC110502521 LOC106607666 coding downstream 90875 27489213 ~ 27505393 (+)
LOC110502522 NA coding downstream 110057 27508395 ~ 27516541 (+)
G1849129 NA non-coding upstream 180259 27199787 ~ 27200000 (+)
G1849101 NA non-coding upstream 197331 27180134 ~ 27182928 (+)
G1848531 NA non-coding upstream 408425 26969151 ~ 26971834 (+)
G1848400 NA non-coding upstream 473209 26775973 ~ 26907050 (+)
G1848401 NA non-coding upstream 560400 26766971 ~ 26819859 (+)
G1849299 NA non-coding downstream 23866 27422204 ~ 27424989 (+)
G1849304 NA non-coding downstream 50721 27449059 ~ 27456847 (+)
G1849558 NA non-coding downstream 160501 27558839 ~ 27559542 (+)
G1849565 NA non-coding downstream 165523 27563861 ~ 27564082 (+)
G1849208 LOC106607606 other upstream 104000 27274338 ~ 27276259 (+)
G1845108 NA other upstream 3026013 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 4033770 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 6595056 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 6863373 20358591 ~ 20516930 (+)
LOC110502527 LOC106607701 other downstream 591936 27990245 ~ 27993189 (+)
LOC110502528 bic1a other downstream 603537 28001291 ~ 28078254 (+)
LOC110502541 LOC106607837 other downstream 1099685 28497576 ~ 28571528 (+)
G1851386 NA other downstream 1645023 29043361 ~ 29075998 (+)
G1852590 NA other downstream 2620152 30018490 ~ 30025046 (+)

Expression


Co-expression Network