XLOC_037398 (retsatl)


Basic Information

Item Value
gene id XLOC_037398
gene name retsatl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 44994214 ~ 44998722 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073583
CTAATAAATAAGGCCTTGACGCGTTCACCAAATAAAAAGCTGTTGGTTGCAGTCTCTGGAAAGAGCTGCTACTTAAGCTTTTAACACTACTTTTAAAGAGTGAATCTTCTAGCAGTCACTCCTCAAATTCAAAGTTACAGTCTTTTCTGCCAGTGATTGAAGATGTGGTGGATTTTGCTGTTCTTAGAATGGTTTGTAGACTGGGCTCGTGGCACATTCTGGTATCTGTTTGGCAGGAGAAGTGGCCTGTGCAAGGGTACCATCAGTCCTCAAGGCCCGCTAGTAGTCGACCAGGAGAAAAAAGACAAAGTGCTTCAGAAAGAATATGCTTCAAATGAAGTACCCGATAACTTGGATGTCATTGTGATTGGTAGTGGCATTGGTGGCCTGACTGCAGCTGCAGTTTTAGCGAGGCTCGGAAAGAAAGTCCTAGTGCTGGAGCAAGACAAGCAGGCAGGAGGCCTTTGTAAGACTTTCACTGAGAAGGGCTTTGAGTTTGACTGTGgcTTCTATTATGTTGGTCAACTTCATGAGAACAGCTTCCTGAAGATTGCTTTGGATTTGATTACTGATGGCCAAGTGCACTTTGCTGAGCAAGGTTCACATGTGGAAACTGTTGTTATTGGTAAAGGGCCTGAGTGTAAAGAATACACTATCTATAATGGTAAAAAGCAGATGGAGGCTCATCTGAAGAAACAGTTCCCCAATGATGCTAAAGCAGTAGAggaattctttaaaataatgaagATTTGTTCTGAGAAGGTCCGTCTGCTTTGTATGCTGAAGATGGTCCCACTCTGGTTTGCTCGCTTCATATTGAGGACTGGAATTGCTGACTTTATTTCCCCAATTTTAAAATATTCCCGCACCAGTACATCAGAGGTGGTCAAGTCTCTTACCAGCAACCAGGATCTCCTCACAGTGTTCTCAAAAACATTTTGTGGTGTCCCACCCAAAAACTCCAGCTGCATGATTGATGCCCTCCTCCTACACCACTCAAAGCGTGGTGTGTACTATCCTCAGGGTGGTGCTAGTGAAATCCCGTATCATATCATCCAGGTTTTGGAGAAACATGGTGGAAAAGTCCTGGTCAATGCTCCAGTTTCTAGAGTTCTAGTTAATGAGCAACAAAATGCATACGGTGTGGCTGTGAAGACTGGAGATGAAGATATTGAAATCAAAGCTTCAGTGGTTGTTTCAAATGCTGGTGTGTTCACTACTTTCCAGAAGCTCCTGACTCCAGAGATCCAGGCAGATCCCCAGGTCCAGGAATATCTTAAAGCTCTGAAACCAGGCAAAGGCTTTTTTCAAGTATTTGCTGGCTTCAATGCCACAATGGAAGAACTAGGCATCTCTTCAACTGACATGCGGCTCTATAAGGGCAACAACGTTGATGAGATGATGGAGGAGTACTTTGCTTCAGACAAGCAAGATGCACCTGATAATGTCCCCATGATGTATCTTTCCTTCCCCTCTGCTAAGGATCCCACCTCAAGCACTCGTTTCCCAGGGCAATCACGTATGGTGATCCATACTTTGGTCAATCCAAAGTGGTTTGAACAGTGGGAAAACGTTAATGAGGCTGAAAGAGGTGAAGAATATGAGAACTACAAGATGAGATTTGCCAATCATCTGTTTGACTGGGCTTGTGTCCGTTTTCCCCAGTTGAAAGAAAAGGTTGCATTGCTGCATGCTGTCACTCCCATCAATATGCATGGCCTGGGAGCCTCCTATTGTTCCATGTCTGCAGAGCACAATCTGGAGAGATACCAGCCTCTGAACATTGCCACCATCAGGTGCAATACACCAGTCAAGAACCTCTACCTGTCAGGACAAGATATCTTCACTGCTGGTTATTCTGGAGCTCTGCATGGTGGCTTTCTCTGTGCTTCAACTGTTATGGATCGCTGTCTGCATATTGACCTTCTGCTCCAACAAAAGAAGCTCAAGAGCAAGTCTGTCAAGAAACTAGAGTGAGGCTGTGAGTTTATAAAGGTGGCTTATTACAATGACAAGACCTGTTTTGATACTGTTTTGCTGCATATTTCTGCTGCAACTCTGAATAAAGCTTTGAAATGCTG
>TCONS_00073584
CCTGAGTGTAAAGAATACACTATCTATAATGGTAAAAAGCAGATGGAGGCTCATCTGAAGAAACAGTTCCCCAATGATGCTAAAGCAGTAGAggaattctttaaaataatgaagATTTGTTCTGAGAAGGTCCGTCTGCTTTGTATGCTGAAGATGGTCCCACTCTGGTTTGCTCGCTTCATATTGAGGACTGGAATTGCTGACTTTATTTCCCCAATTTTAAAATATTCCCGCACCAGTACATCAGAGGTGGTCAAGTCTCTTACCAGCAACCAGGATCTCCTCACAGTGTTCTCAAAAACATTTTGTGGTGTCCCACCCAAAAACTCCAGCTGCATGATTGATGCCCTCCTCCTACACCACTCAAAGCGTGGTGTGTACTATCCTCAGGGTGGTGCTAGTGAAATCCCGTATCATATCATCCAGGTTTTGGAGAAACATGGTGGAAAAGTCCTGGTCAATGCTCCAGTTTCTAGAGTTCTAGTTAATGAGCAACAAAATGCATACGGTGTGGCTGTGAAGACTGGAGATGAAGATATTGAAATCAAAGCTTCAGTGGTTGTTTCAAATGCTGGTGTGTTCACTACTTTCCAGAAGCTCCTGACTCCAGAGATCCAGGCAGATCCCCGTATGTGATCTGTTTACCAGTTCTCCTGCAGTAACTTAACATGGTCCTAACCAGTTTTCCATGTGGGCTGTTTATTTGATCTATCTAATCTTTCCCCCTACCTTGGTGGCGGTTTTCTGCCTCTCCAGAGGTCCAGGAATATCTTAAAGCTCTGAAACCAGGCAAAGGCTTTTTTCAAGTATTTGCTGGCTTCAATGCCACAATGGAAGAACTAGGCATCTCTTCAACTGACATGCGGCTCTATAAGGGCAACAACGTTGATGAGATGATGGAGGAGTACTTTGCTTCAGACAAGCAAGATGCACCTGATAATGTCCCCATGATGTATCTTTCCTTCCCCTCTGCTAAGGATCCCACCTCAAGCACTCGTTTCCCAGGGCAATCACGTATGGTGATCCATACTTTGGTCAATCCAAAGTGGTTTGAACAGTGGGAAAACGTTAATGAGGCTGAAAGAGGTGAAGAATATGAGAACTACAAGATGAGATTTGCCAATCATCTGTTTGACTGGGCTTGTGTCCGTTTTCCCCAGTTGAAAGAAAAGGTTGCATTGCTGCATGCTGTCACTCCCATCAATATGCATGGCCTGGGAGCCTCCTATTGTTCCATGTCTGCAGAGCACAATCTGGAGAGATACCAGCCTCTGAACATTGCCACCATCAGGTGCAATACACCAGTCAAGAACCTCTACCTGTCAGGACAAGATATCTTCACTGCTGGTTATTCTGGAGCTCTGCATGGTGGCTTTCTCTGTGCTTCAACTGTTATGGATCGCTGTCTGCATATTGACCTTCTGCTCCA
>TCONS_00073585
ACATGGTGGAAAAGTCCTGGTCAATGCTCCAGTTTCTAGAGTTCTAGTTAATGAGCAACAAAATGCATACGGTGAGGTTTGTTCAAGTCAGACAtacccaatcctgttcctggagctcTACCTTCCTGTAGAGTTTACCTCCAACCCTGATCAGTAACTGGAGGAagtaggatctgaaggagcactttGTAATCTTAAGGCCAACGCTTTAAGGTTCCAGCTAACTCTGCAGCCAGGTGTGGCTGTGAAGACTGGAGATGAAGATATTGAAATCAAAGCTTCAGTGGTTGTTTCAAATGCTGGTGTGTTCACTACTTTCCAGAAGCTCCTGACTCCAGAGATCCAGGCAGATCCCCAGGTCCAGGAATATCTTAAAGCTCTGAAACCAGGCAAAGGCTTTTTTCAAGTATTTGCTGGCTTCAATGCCACAATGGAAGAACTAGGCATCTCTTCAACTGACATGCGGCTCTATAAGGGCAACAACGTTGATGAGATGATGGAGGAGTACTTTGCTTCAGACAAGCAAGATGCACCTGATAATGTCCCCATGATGTATCTTTCCTTCCCCTCTGCTAAGGATCCCACCTCAAGCACTCGTTTCCCAGGGCAATCACGTATGGTGATCCATACTTTGGTCAATCCAAAGTGGTTTGAACAGTGGGAAAACGTTAATGAGGCTGAAAGAGGTGAAGAATATGAGAACTACAAGATGAGATTTGCCAATCATCTGTTTGACTGGGCTTGTGTCCGTTTTCCCCAGTTGAAAGAAA

Function

symbol description
retsatl Predicted to enable oxidoreductase activity. Is expressed in gut and ovary.

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-252 Predicted to enable oxidoreductase activity. Is expressed in gut and ovary.

Ensembl:

ensembl_id ENSDARG00000034989

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073583 False 2081 mRNA 0.44 11 44994214 44998722
TCONS_00073584 False 1429 lncRNA 0.45 8 44995647 44998575
TCONS_00073585 True 770 processed_transcript 0.45 5 44996269 44997423

Neighbor

gene id symbol gene type direction distance location
XLOC_037397 BX571855.1 coding upstream 61921 44932175 ~ 44932293 (+)
XLOC_037396 frzb coding upstream 155066 44832032 ~ 44839148 (+)
XLOC_037395 nckap1 coding upstream 168795 44721808 ~ 44825419 (+)
XLOC_037393 ppp1r1c coding upstream 504236 44430705 ~ 44489978 (+)
XLOC_037394 NA coding upstream 538106 44455143 ~ 44456108 (+)
XLOC_037399 NA coding downstream 41043 45039765 ~ 45044991 (+)
XLOC_037400 BX510317.1 coding downstream 65433 45064155 ~ 45064269 (+)
XLOC_037401 NA coding downstream 113774 45112496 ~ 45122990 (+)
XLOC_037402 adarb1b coding downstream 228306 45227028 ~ 45541367 (+)
XLOC_037403 NA coding downstream 262662 45261384 ~ 45261761 (+)
XLOC_037389 BX649590.1 non-coding upstream 1138604 43855495 ~ 43855610 (+)
XLOC_037387 BX470133.1 non-coding upstream 1218849 43775251 ~ 43775365 (+)
XLOC_037386 CU855879.1 non-coding upstream 1662703 43331395 ~ 43331511 (+)
XLOC_037404 NA non-coding downstream 550065 45548787 ~ 45553378 (+)

Expression


Co-expression Network