LOC110502516 (LOC106607607)


Basic Information

Item Value
gene id LOC110502516
gene name LOC106607607
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27400913 ~ 27414490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580583.2
ACtctgaacacacatacacacacactgcacacgtGTGCCTACCTCAGTTTGATTTGTGCTGCTCACTGAGATCTGAACTGGACTGGAGAAGAGACATTGGAGAGGGGGGGAAAAACTAGAGATAATAtaggagaagaggatagagaagagaagagagagaagcttCACTCACAGACGCTGACATTCACATAGCAATCACAGATCTTGTAGGACTTCGTATGGGGTAAGGCTCCACATGTGACTGAGAGGGACGTACAGATACCCAATACTGTGCTTTGGGACTTGACACCACACTGGGAGTTGTGCTGAGGCAGCCGGACACCTACTAAAGCAGAAAGCAAGCTCCAGGGGAGGGAAAGGGGCATCCAACAACAACCTGTGTTGTTTGCTCGAGCTCCTCCTCCCGTCCATCTCTTATCCTCCTTccgtccatctctcctctcatccctcataTTCTGCTCTGGAGTGGGAGAGTCTGTCTGCACTGTGAGTCCCTGGGAGACGGCAGAGTGTTGACAGTGTGAATGATGGCAGCAATGGCCCTGTCCTGGTATCTCTGCCTGGCCGTGACTCTCCTCTGTGGCCCCTCCTGGCCCCAAGGACACTCGGCTCTGGCCCCTGAGAATGAGGTGCCACTCCGCCCCACCGCCTGGCTGCCTGATGGAAAGGTCACCTCCATACATCTGCCCAAAGGACGCACCCggagACTGTACTTCACATTGAAGAAGAAGGTTGTGATGATGTCTGTGACCGTCAGTCCCTGTGACCTCCCCATCGAATGGACCCTCGCAGCCCGAACCCTGAAGGACAAACCGCCTAAAAGTCCACACTGGAGTACCAAGAAGAGTATGCCAGAGGTGTGGTGGAGAGGGCCTGGAACTGAAGCCAAGATACACACCTACACTGGCAATGCCATGGACACCTACACAGGTCCTTCCTATGCCCCAGCATCTATCTACATCCTCAGACTGCGCCCCAAGGACCAGGACACCAGGGCTACCATGTACCTCCATCAGGGCTCTGGGCCCTCAGGGGCCTTCCCGGAGCTTCCCTCTGACCCCCATGTCCACACCCTGGGTGTAGGAATGACCAGTGTCACCCTCAGCTGGGGCCCCAGTACCTCTCTCACAAGACTGCCGCACACCCAACGCAGCTATGACTACTGTGTCCTTGTCAACCGCAAACACAACTACCGCAACCTCTGTGCCGCCCGGGAGGGCATCAGGAAAGAGCAGGAGAAAGACAAGAAACGGCAGAAGAAGGACAAACAAAGGAAAGTAACTGTGTGGCCCATTCTCAAAAActggtggtggcagcagtgggATGCTGAAACAGATCTCCGGTCACCTGCTGCTCTCCGTGACCAGCATGATGATCTCCAATGTGTTTGTAAGGGAACAGAGAGCGTGTGCACTGTTTCAGAGCTTGTCCCCGACACGCAGTACTACTTTGACGTCTTTTTGATTGACAGGCTAAATGGAACCAGTGCAGCATATACTGGAACGTTCGCTCAAACACATGAGGAGGCCCGACCAGCTATCACACCACTCAGGGAAGGGGAGCTCCGGTGGGTGACCTTCCAGGATGGAGGCTCAACCTCTGGGGAGTTCTTTAGCTTCCGTCCCCGGGGTTGGCAGCAGAGTGGCCTGCTCACTCTCCAGAGCTGCGGAAGCAGTGAGAAGATCAAGGTCACCATCTCCAGCAAGGGCCAAGAGCTTAGCTCCCAGGCTGTGGGAGAAGACTTGGCTCAGATCTGGCTCCAGGGCAGCCCCTCCTACCTCatccacctggagagagagggaactgcgCCCCCCAGACAAGCTGCTCTAGGGGCACTGAAGGCCTCTGTTAAGATGCAGGCATCCTCTGCTTACCATCGTCAAGGGGTACCTTCGCTCCCCACCACCCTGCAGATTAAGTCTTTCAACAGGCTGAGGAGCTGTGACTCCATCACCCTGGCCTGGATGGGCACAGAGGAGAGGAGCCTATACTGCGTGTACCGCCGGAGGCTGGGTAAGGGCGAGAAGGGAGGTACGGCACCCTGCCTGGGGCCTGAGTCACGGTCGGACACTGAGAGAGTCGTGTGTAAATACTTCCAGGAGCTAAACCCTCGGCGGGCTGTCACGACGGCCGTGATCAGGGGCCTGGAGCCTGGGGTGGCCTACATGTTTGATGTCTATCTAATGAGACGCTGGGGGATCCCCATAAAGTACAGCAGCAAGACAGTGAGAACCAGGAAGGAGTGCTGAGCTGTTGCCACCTCCTAGTCTCGTAGTCTGCAGCAGCATTGGACTCAACAAAGAGGTGATTTACAAAGACTTACCATAACAAAGCCATTCTACTATGAGGGAGACTGTTAATAATTGTGGTACACCCTCCGAAGAGTGGTCGCATTTGAACACTGGTACCCATGGATTGGGTAGGAGAAGCAGAGGGGGGACCGCACACCAGCAAAATTAATTCCATTACAGTAACCTGCTGTGCTTTTTGTCTTTTTGTTTATAGTTGTGCCAGTTGTCCAAGTACTTATTCTGAGTCTGAGTACAAAGGAGGATAGAGGTTTTTGATGACAAAGAATGTCAGCAAAGACTTTGCCCAAAAATATGCAACAGAAACAGATGGAGCTTTGATCGTACTTTACAATGGGGATAGAGAACGTATGGCAAGATCCTACAATATAGTATATATTTAGTGCTGCATTGTTTTGTTCTATATTCTACAGGCTTAAAACACAGATGGGGTAATCTATTGATACTTAGCGCAAAGTCCGTGTGTAGGCTATCTTGTGTTCTGCTTTCGCATGAAGCAGGTAAAATGAGCTAGCGACTAGCGTCATTGTCTTTGATGTATTTTAATTGTGCTATGCTTAAAATGCCCCAATAAACACATTAGTATCTGTATCTCGGTATCAACATCtaataaaatataatattttgtTTGACTCTTTGCTGACAGTTAGTTGAGAAAATGACTGAATTGAGAAATCAATGTGACCCTAATGTTAACACTTGCATTTATTTATCTCTACTTGGATGATTACTACAAAACTAAAGAAAACAAATGAAAATCATGATTGCCTAGCAGCCCTACCTGCTTCAACAGACAGAATGGGTGGTCATCAGCCTGTGATATCAGAAAGTCCTGATTCCACAAAACACACTAAAAAAGTAACCAATACGAGTGCGTTTTTGCATCGACGTAAGCATGTTTTCGTTAAGCCTGTTGCATGCTTCCCAGTCGAAACAGTTTGTGCCTATATTATGCCTAAATTAAAATGTGTGatgtttttgtta

Function

NR:

description
protein NDNF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580583.2 True 3293 mRNA 0.50 4 27400913 27414490

Neighbor

gene id symbol gene type direction distance location
LOC110502514 LOC106608765 coding upstream 2575 27380259 ~ 27398338 (+)
LOC110502511 LOC106607602 coding upstream 254408 26695559 ~ 27146505 (+)
LOC110502510 LOC106607591 coding upstream 797828 26565286 ~ 26603085 (+)
LOC110502507 LOC106607527 coding upstream 855480 26515116 ~ 26545433 (+)
LOC110502508 LOC106607536 coding upstream 871551 26471360 ~ 26529362 (+)
ecd ecd coding downstream 20322 27434812 ~ 27448641 (+)
LOC110503096 LOC106577060 coding downstream 59161 27473651 ~ 27485960 (+)
LOC110502521 LOC106607666 coding downstream 74723 27489213 ~ 27505393 (+)
LOC110502522 NA coding downstream 93905 27508395 ~ 27516541 (+)
LOC110502523 LOC106607673 coding downstream 351328 27765818 ~ 27769060 (+)
G1849129 NA non-coding upstream 200913 27199787 ~ 27200000 (+)
G1849101 NA non-coding upstream 217985 27180134 ~ 27182928 (+)
G1848531 NA non-coding upstream 429079 26969151 ~ 26971834 (+)
G1848400 NA non-coding upstream 493863 26775973 ~ 26907050 (+)
G1849299 NA non-coding downstream 7714 27422204 ~ 27424989 (+)
G1849304 NA non-coding downstream 34569 27449059 ~ 27456847 (+)
G1849558 NA non-coding downstream 144349 27558839 ~ 27559542 (+)
G1849565 NA non-coding downstream 149371 27563861 ~ 27564082 (+)
G1849208 LOC106607606 other upstream 124654 27274338 ~ 27276259 (+)
G1845108 NA other upstream 3046667 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 4054424 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 6615710 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 6884027 20358591 ~ 20516930 (+)
LOC110502527 LOC106607701 other downstream 575784 27990245 ~ 27993189 (+)
LOC110502528 bic1a other downstream 587385 28001291 ~ 28078254 (+)
LOC110502541 LOC106607837 other downstream 1083533 28497576 ~ 28571528 (+)
G1851386 NA other downstream 1628871 29043361 ~ 29075998 (+)
G1852590 NA other downstream 2604000 30018490 ~ 30025046 (+)

Expression


Co-expression Network