si:ch211-248a14.8 (LOC106608780)


Basic Information

Item Value
gene id si:ch211-248a14.8
gene name LOC106608780
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27449622 ~ 27453880 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580595.2
CCATCTAGATGTCAATAACTGTGTGCTTAGAGTTCGTGAAGGCTCACATGGAAAATGCATTCCGCTCAGGTCATTGGCCATCAGACGCTCAATACTGAGAAGATAGAAAGGGAACTCTTTTAAACCTGTTTGATAAGGAACATGCATCTGTGGTCAATATAACCACATCAACCTGTTTCATCCGTGGATATTggttggagaggagaaggagacgaGGGACATACATTGTTCTTATGGAGTTTTGTCTGAGTAAATATAGGGTATAGTCCACTTGAAGAGTTTGGAACCCTGTTTTAAAATTACTCAAATGTCAAGGGAGTGGAGGAACGATGGCTCTCTACCTTCATTACCTGCTGCAGTAGAGGGGTTGATGAGAGGCAGTTGGAATATGAGGATGGACCCCAGGGATACCTACCCTACTACCAGGGACTGTCTCCGGAAAGAATGTCCTTGGTGGATGAGATGGAAGAGGAGTGCTAGTATACTGAGGAGGTTTTTGCCTGATGTATGGAAGCCTCTAGTGCCATTACTCAGCTATGGTGCCACCTTATTGGTCATGGTGTTGTATGCCCTGGCAGATCGGCTCCGCAGCTTTGTTGCTGATATCTTCATTCCCCAGTACCACTACCAGTTTTCTGTACCAATCACATTTGTCCAGGTGCTGGTGACTCTGCTATACTTGCTGCTCCTCCATGCCATGGGCCTGGCACCACTGAAGCCCTACTCTTTGTCTCTGGGTGAACGCCTGCTGGTGCCTTCTGTCTGTGGCAGTGCCCAAACTGTGCTGGGTGTGTGGGCAGAGGCCAGTGCCCACTCCGGCATGTACGCCCTCACCATGCGCCTGCTGCCCCTGCTCTGTGTGGGCTGGAGTCACGGCCTGCGGCTGGCAGTACCGCCATCAGTCCACCTAACAGGCCTTATCACGGTCATCACTTTTACCTCCGTCACTATCACAGCGTCTCAAGGTCTCCCGTCAGTGGAGGTTCTGGAGTGTCTCTACGCCCCGCTGGCCCTCCTTCTACACAGCCTTTCTCTGACCTGGCTGGCCAAGGTGGCTGAGACCGAGCACCGGCACCACAGCAGCTCCCACATCTCACCTTTTGACCTGTACTTCACCCTGATGGTGAACCAGAGCCTGGTGCTTGGCTTCCTGTGCCTGCTGCACCCAGAGGGCCCCCGGGCACTGGGCGAGGGTAGCTGGCACAGCCTGCTCTTCATGGGCTACCTGCTGGCGATACTGCTGCTGGGAGCTCTACAGCACCTCTTGGTGGACATGGCCGCTCTGACCTTCTCACCGCTGGCTGCAGCGCTACTCCACACGGCACACGGATTAACAAGACCGTTGTACAGCCTGTTGTAGATGATCCAACATGGAGGAGGATGAAGTTGACTCTAGAGACTAGTCAGAAGTCAGTTGCCTCcctcaaatcaaattgcatttgtcacatacacatggttagcagatgttaatgcgagtgtagcaaaatgcttgtgcttctggttccgacagcgcagtaatatctaacaattccccaacatctacctaatacacacaaatctaaaaagggttgaatgagaatatgtacatatggatgagcgatggccgagcggcataggcaaggtgcaatagatggtataaaatacagtatattaacgtgactagtgatccatttgtaaaagcggccagtgattgggtctccatgtaggcagcagcctctcggAGTTAGTAATTGCTGttaagcagtctgatggccttgagatagaagctgtttttcagtctctcagtcccagctttgatgcacctgtactgacctcgccttctggatggtagtggtgtaaacagacagtggctcgggtggttattgtccttgatcttttttgccttcctgtgacatcgggtgctatagttgtcatggagggcaggtagtttgcccccggagatgcgttgtgcagaccacaccaccctctgtagagccttgcagttgagggtggagcagttgctgtaccaggcggtgatacagcctgacaggatgctctcaattgtggaTCTGTAAAAGTTAATGGTTAAAGGGAGGATATGGTAAGGATAATCTTTTCCTAGATCtgtctatatcaaatcaaatcaaatcaaattttatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataacaagttatctaactaacaattccaaaactactgtcttgtacacagtgtaaggggataaagaatatgtacataaggatatatgaatgagtgatggtacagagcagcataggcaagatataTGGTCAACTTCTACCAGTAGAAGGATAGTTGTACTACAGAGCAGTATTATTCACTCTCTGTAGTACAAAGTCACCTCCCTAGGTGCAGCACTTTAATTACCAGCGCTTGTGTTCCTTCTTATCCTGTATATCATACTTACTACTGAACCTATATAAAATGGTTTGAAAAGGCACTCAATATGTAGGGAGACTGGATAAAATCTTTGCACTGGATTATCAACCATACAGAAATGCTCAGAATGTGACTGGGAATATGTCATAAGGCTGCTAGTTCAGAGTGGTGTAATTAATAAACGAAATGATAAGCATTACAGTTCAAGTGTAAAGATACTGTCTACCTCAAGGTTTTTCAAATCCCCAAATGCAACAATAAAAGTtaacagta

Function

NR:

description
uncharacterized protein LOC109899118

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580595.2 True 2724 mRNA 0.47 5 27449622 27453880

Neighbor

gene id symbol gene type direction distance location
LOC110502517 LOC106607615 coding downstream 13780 27423892 ~ 27435842 (-)
LOC110502513 LOC106607606 coding downstream 139451 27252967 ~ 27310171 (-)
cuzd1.2 LOC106607512 coding downstream 983732 26457010 ~ 26465890 (-)
LOC110502503 hmx3 coding downstream 1043068 26403613 ~ 26406554 (-)
LOC110502502 hmx2 coding downstream 1051489 26387522 ~ 26398133 (-)
LOC110502526 LOC106607693 coding upstream 396224 27850104 ~ 27859306 (-)
LOC110502525 LOC106607696 coding upstream 406212 27860092 ~ 27983425 (-)
LOC110502532 NA coding upstream 661715 28115595 ~ 28120442 (-)
fam13c LOC106607716 coding upstream 685288 28139168 ~ 28148897 (-)
LOC110502533 mot9 coding upstream 727206 28181086 ~ 28197583 (-)
G1849416 NA non-coding downstream 126792 27322353 ~ 27322830 (-)
G1849410 NA non-coding downstream 132003 27317419 ~ 27317619 (-)
G1849397 NA non-coding downstream 159296 27290100 ~ 27290326 (-)
G1849390 NA non-coding downstream 164848 27284469 ~ 27284774 (-)
G1849386 NA non-coding downstream 167089 27282313 ~ 27282533 (-)
G1849524 NA non-coding upstream 35431 27489311 ~ 27493373 (-)
G1849555 NA non-coding upstream 101061 27554941 ~ 27555153 (-)
G1849591 NA non-coding upstream 129448 27583328 ~ 27583726 (-)
G1849601 NA non-coding upstream 136919 27590799 ~ 27590998 (-)
G1849604 NA non-coding upstream 139569 27593449 ~ 27593665 (-)
G1846858 NA other downstream 2009235 25439807 ~ 25440387 (-)
LOC110502462 LOC106607169 other downstream 4103851 23344353 ~ 23358461 (-)
G1843946 NA other downstream 4216199 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other downstream 4231352 23213905 ~ 23218749 (-)
G1841959 NA other downstream 6077823 21345514 ~ 21371799 (-)
G1850441 NA other upstream 621045 28074925 ~ 28078251 (-)
LOC110502553 NA other upstream 1470859 28919846 ~ 28932600 (-)
LOC110502574 LOC106608078 other upstream 3697729 31151609 ~ 31239202 (-)
G1854905 NA other upstream 3763717 31217597 ~ 31218171 (-)
G1855326 NA other upstream 4526117 31979997 ~ 31981333 (-)

Expression


Co-expression Network