LOC110503096 (LOC106577060)


Basic Information

Item Value
gene id LOC110503096
gene name LOC106577060
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27473651 ~ 27485960 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110503096
ATGGTTATCCAAGATAAACTTAAAATAAAGtttgataatgtgtgtgtgtattttccttCCTTAGGTCACATGACAGATCTGTTGTACACAGAGAAATACTTCACTGAAGGATTATATCACGGCAGAGGAGAAGAAGCTGAAACAGGTCAAACTGTGGGCAGAGAAGCTGGATGTGTTGTCAGCCACAGCCATGCAGGATCCCGAGGGCTTCCTGTGACTCCCGGTCAACGCCTTCAAATTGATGAAGAGGCTGAACACAGAATGGGGAGACCTGGGGAGCCTGGTGCTGAAGGACACCACAGACGGCTTCATCTCTAACCTGACCCTCCAGAGGAAACACTTGCCTACAGACGAGGACCAGACAGGCGCAGCCAAGGCCCTTCTCAGACTGCAGGACACTTACAGGCTAGATACCAACATCATCTCTAGAGGAGACCTGCCAGGAGTGACGCACAAGAGCCCTATGACGGTGGAGGACTGCTTTGAGCTGGGGAAGATTGCCTACAGCGAGGTGGACTACTACCACACTGAGCTATGGATGGAACAGGCCCTGAAGCAactggatgaaggagaggagTCCACCATGAACAAGGTTACCGTGCTGGACTACCTCAGCTATGCCATCTACCAGCAGGGAGAGCTAGGCAGGGCCCTGGAGCTCACCAAGAGGCTGCTCATACTGGACCCGGAACACCAGCTGGCCAACGGCAACCTGAAGTACTTTGATTTTCAACTGACAAAGCAGAGGAAGGCCCAGGCCGAGGAGGCCCAGAAGGCCCAGAATGAGGGCAAGGGGCGAACGAATAGACAGACGAGTGATGCCTCCAAGGAGAAGATGCGCTTCCGGGAGCCTGTCCCAGAGAGGAAGATTTATGAGATGCTGTGTCGAGGGGAGGGCATAAAGCTGACCCCCCGCAGACAGAGCTGGCTTTTCTGCCATTACTATGACAACCACAGTCACCCCAAGTACCTGTTGAGCCCGGTGAAGCAGGAGGACGAGTGGGACCGGCCCTACATCGTCCGTTACCTTGACATCATCTCTCACAGCGAGATCGAGAAGGTCAAAGAGCTGGCCAAGCCCAGGCTCCGCCGGGCCACCATCTCCAACCCCATCACTGGTGTGCTCGAGACTGCCCCCTACAGGATCAGCAAGAGTGCATGGCTGACAGCGTATGAACACCCATTGATTGACCAGATCAACCAGCGGATTGAGGACCTCACAGGACTGGCGATGGACACTGCAGAAGAGTTGCAGGTTGCAAACTACGGTGTGGGAGGGCAGTATGAGCCACACTTTGACTTTGGACGGaaagATGAGCCTGATGCCTTTAAAGAGCTGGGAACTGGAAACAGCATAGCAACCTGGCTCTTCTATATGAGTGATGTGGCAGCAGGAGGAGCTACAGTTTTCCCAGATGTGGGTGCTGTAGTATGGCCGAAAAAGGGGACTGCAGTGTTCTAGTACAACCTGTTTCCCAGTGGAGAGGGAGATTACAGTACTAGAAACGCAGCCTGCCCAGTACTGGTGGGCAACAAGTGGGTATCAAACAAATGGATCCATGAACGAGGGCAGGAGTTCAGACGACCCTGTGGCCTGAATGAGACTGCATGATGAAGGGTGAAGGCTTTCCttccacacccctcctcctctttcccgcTGTTCCTCTTGAACCCCGGGACCTGAGAACACTTCTGCTAACACTTCAGTCTATGAAAAGGGGGCCATGgacatccctcctcctcctcttcctccctccctcatttgcTCCTTACCCCCACTCTGTTCCCCTCTGAGCCCAGGGTGTTTCGGGGCTTGCAGTTTGGACAGTATTAGTGGTGTTCTGACTGACATGGTGCCCTCAAGGCTGTTGGATATGTCTCAAATGAACACGTTGTGCGTTCATCCTTATGACTTTGTTTGCACTCTTTATGGACTCTGTGTGAACACAGCTCAAATGGTTATTTCAGAGTGAAGGTTCTGGAGATGACTGCAAG
>TU2116869
GAAGGATTATATCACGGCAGAGGAGAAGAAGCTGAAACAGGTCAAACTGTGGGCAGAGAAGCTGGATGTGTTGTCAGCCACAGCCATGCAGGATCCCGAGGGCTTCCTGTGACTCCCGGTCAACGCCTTCAAATTGATGAAGAGGCTGAACACAGAATGGGGAGACCTGGGGAGCCTGGTGCTGAAGGACACCACAGACGGCTTCATCTCTAACCTGACCCTCCA

Function

NR:

description
PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110503096 False 1995 mRNA 0.54 14 27473651 27485960
TU2116869 True 225 lncRNA 0.54 3 27477232 27477737

Neighbor

gene id symbol gene type direction distance location
ecd ecd coding upstream 25010 27434812 ~ 27448641 (+)
LOC110502516 LOC106607607 coding upstream 59161 27400913 ~ 27414490 (+)
LOC110502514 LOC106608765 coding upstream 75313 27380259 ~ 27398338 (+)
LOC110502511 LOC106607602 coding upstream 327146 26695559 ~ 27146505 (+)
LOC110502510 LOC106607591 coding upstream 870566 26565286 ~ 26603085 (+)
LOC110502521 LOC106607666 coding downstream 3253 27489213 ~ 27505393 (+)
LOC110502522 NA coding downstream 22435 27508395 ~ 27516541 (+)
LOC110502523 LOC106607673 coding downstream 279858 27765818 ~ 27769060 (+)
LOC110503097 LOC106577081 coding downstream 304799 27790759 ~ 27848517 (+)
LOC110502527 LOC106607701 coding downstream 504285 27990245 ~ 27993189 (+)
G1849304 NA non-coding upstream 16804 27449059 ~ 27456847 (+)
G1849299 NA non-coding upstream 48662 27422204 ~ 27424989 (+)
G1849129 NA non-coding upstream 273651 27199787 ~ 27200000 (+)
G1849101 NA non-coding upstream 290723 27180134 ~ 27182928 (+)
G1849558 NA non-coding downstream 72879 27558839 ~ 27559542 (+)
G1849565 NA non-coding downstream 77901 27563861 ~ 27564082 (+)
G1849592 NA non-coding downstream 98528 27584488 ~ 27584826 (+)
G1849647 NA non-coding downstream 134358 27620318 ~ 27620535 (+)
G1849652 NA non-coding downstream 138144 27624104 ~ 27624403 (+)
G1849208 LOC106607606 other upstream 197392 27274338 ~ 27276259 (+)
G1845108 NA other upstream 3119405 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 4127162 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 6688448 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 6956765 20358591 ~ 20516930 (+)
LOC110502528 bic1a other downstream 515915 28001291 ~ 28078254 (+)
LOC110502541 LOC106607837 other downstream 1012063 28497576 ~ 28571528 (+)
G1851386 NA other downstream 1557401 29043361 ~ 29075998 (+)
G1852590 NA other downstream 2532530 30018490 ~ 30025046 (+)

Expression


Co-expression Network