LOC110502521 (LOC106607666)


Basic Information

Item Value
gene id LOC110502521
gene name LOC106607666
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27489213 ~ 27505393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960072.1
GCACTTGTCTGGCTGTGGCAACTGCGGCCAGACAGAACACAGGCAagcgtgagtgagagagagggagtgagctagagagggagagtggaagtTACCCATCTCAAGTCAAGAATTCAATTATCAGAGTCAAAACACATGAGGATATTGGAAGACAAAAACGCAGTGAATTTGGGGAAATAGAAATACTTAGGACGCAATGATGACCCAAATAGAGACAACGGTGCATTATGATAACGGATTCGGAGATGAGGAGGACTACATGATACAGGAGGATGAGTGGGACAGGGACATGTTGCTGGACCCTGCCTGGGAAAAACAGCAAAGAAAGACCTTCACAGCTTGGTGTAATTCCCACCTGCGGAAAGCAGAAACACAGATTGAGAACATTGAGGACGACTTCAGGAATGGCCTCAAACTCATGCTTCTCTTGGAAATAATTTCAGGTGAGAGGTTACCTAAGCCCGACAGAGGGAAGATGCGTTTTCACAAGATTGCCAATGTCAACAAAGCCCTAGACTTCATCACCAGCAAGGGAGTGAAACTCGTCTCTATTGGAGCTGAAGAAATTGTGGATGGTAACATTAAGATGACTCTGGGAATGATATGGACCATCATCCTCCGCtttgccatccaggacatctctGTAGAAGaaACCTCTGCAAAGGAAGGCCTTCTCTTGTGGTGTCAGAGAAAGACTGCCCCCTACAGAAATGTCAATGTCCAGAACTTCCACATTAGCTGGAAGGACGGACTGGCCTTCTGCGCCCTGATTCACAGACACAGACCTGACCTTATCGACTATGCTAAGCTCAACAAGGATGATCCTATGGGGAACCTGAACCTGGCCTTTGAAATAGCAGAGAAGCACCTGGATATTCCTAAGATGCTGGACGCAGAAGACATCATCAACACTCCTAAGCCTGATGAGAGAGCTATCATGACCTATGTTTCCTGCTTCTATCATGCTTTTGCTGGAGCTGAGCAGGCTGAGACAGCAGCCAACAGGATCTGTAAAGTGCTGGATGTGAACCAGGAGAATGAGAAACTTATGGAGGAATACGAGAGGCTGGCCAGCGAGCTACTGGAGTGGATCCGCCGGACCACCCCATGGCTAGAGAATAGGGCAGCAGAGAAGACCATGGTTGAGATGCAGAGGAAGCTGGAGGATTTCAGGGACTACCGCCGCATGCACAAGCCCCCCAAGGTGCAGGAGAAGTGTCAGCTGGAGATCAGCTTCAATACCTTGCAGACCAAGCTGCGCATAAGCAACCGGCCTGCTTTTATGCCTTCTGAAGGAAAGATGGTATCTGACATAGCCAGTGCATGGCAGGGGCTGGAGGGGGCTGAGAAAGGTTATGAGGAGTGGATTCTGACTGAGATCCGCAGGCTGGAGAGACTGGACCACTTGGCTGAAAAGTTTTGCCAGAAAGCCACCACCCATGAGACCTGGGCTAGTGGTAAAGAGCTAATTCTATCTCAGAAGGACTATGAGACTGCCACCCTGACGGAGGTGCGGGCATTGCTAAGGAAACATGAGGCATTTGAGAGTGACCTGGCTGCTCACCAGGACAGGGTGGAGCAGATCGCTGCCATCGCACAGGAGCTCAATGAGCTGGACTATCATGGTGTGGCTTCTGTCAACAAGAGGTGTCAGAGCATCTGTGATCTGTGGGATCAACTTGGTACATTGAcccagaagaggagagaggctttGGAGAGGACAGAGAAGCTGCTGGAAACCATTGATCAGTTGTTCCTGGAGTTTGCCAAGAGATCAGCACCTTTCAACAACTGGATGGAAGGGGCTATGGAGGATCTGCAGGATATGTTTATTGTACACACGATCGATGAGGTCCAGAGCCTGATATCTGCCCATGAGCAGTTCAAGGCCACCCTCCCAGaggcagacggagagagacaggccATCCTGGGGATCCACAACGAGGTGCAGAAGATCTCCCAGAGCTACGGCATCAAGGCCAACCTCCTCAACCTCTACAGTACCATCACCACAGAGGAGCTCCTCGCCAAGTGGGACAAGGTGAAGAAGCTTGTTCCCCAGAGAGAAGGCTCCCTCCAGGAGGAGCTAGCCCGACAGCATACTAATGAAAGGTTGAGACGGCTGTTTGCTACCCAGGCTAACCTCATAGGACCCTGGATACAGACAAGGATGGAGGAGATTGGGCACTGCTCCCTGGAGGTGGGCGGTACATTGGAGGACCAGATGACCCAGCTGAAGCAGTTTGAGCACATCATCGTTACCTACAAGCCCAACATCGACAAGCTGGAGGGAGACCACCAGCACATCCAGGAGTCCCTGGTGTTTGACAACAAGCATACCAACTACACCATGGAGCACATCCGTGTGGGCTGGGAGCTCCTCCTCACCACCATCGCCCGCACCATCAACGAGATCGAGACCCAGATCCTGACCCGCGACGCCAAGGGCATCAGCCAGGAACAGATGCACGAGTTCCGCTCCTCCTTCAACCATTTTGACCGGGAAAACTGGGAGGAGATCAAGACCTGTCTGATCAGCCTTGGTCATGTGGGCAATGAACATCAGAAGAAACACGGGGCGATGGACACTGATGACTTTAGGGCCTGTCTGATCTCCATGGGTTATGATTTGggtgAAGTGGAATTTGCCCGTATCATGATGCTGGTTGACCCCAGTGCCACTGGCATGGTCTCTTTTCAATCATTTATCGATTTTATGACCAGAGAAACCGCTGACACGGACACCGCCGAGCAGGTTGTGGCATCCTTCAGGATCCTGGCAGCcgataagCCCTACATCCTGGTTGAGGAGCTGAGGAGAGAGCTCCCCCCTGACCAGGCAGAGTATTGCATCTTGAGGATGCCCCGCTACAGTGGCCCAGGGGGATCCGCAGGGGCACTAGACTACACCGCCTTCTCCACTGCCCTCTATGGAGAGAGTGACCTCTAACCCTGCAAGATGATACCCAAAAGTGACCTCTTGACCCCACCTAATACGTCTGGATGAAATTCCCTTTAACCAAACACACAAATGAGTGGCGGTTACCTATGTTAGAGTCACAataggtagata
>XM_021580596.2
CACTTGTCTGGCTGTGGCAACTGCGGCCAGACAGAACACAGGCAagcgtgagtgagagagagggagtgagctagagagggagagtggaagtTACCCATCTCAAGTCAAGAATTCAATTATCAGAGTCAAAACACATGAGGATATTGGAAGACAAAAACGCAGTGAATTTGGGGAAATAGAAATACTTAGGACGCAATGATGACCCAAATAGAGACAACGGTGCATTATGATAACGGATTCGGAGATGAGGAGGACTACATGATACAGGAGGATGAGTGGGACAGGGACATGTTGCTGGACCCTGCCTGGGAAAAACAGCAAAGAAAGACCTTCACAGCTTGGTGTAATTCCCACCTGCGGAAAGCAGAAACACAGATTGAGAACATTGAGGACGACTTCAGGAATGGCCTCAAACTCATGCTTCTCTTGGAAATAATTTCAGGTGAGAGGTTACCTAAGCCCGACAGAGGGAAGATGCGTTTTCACAAGATTGCCAATGTCAACAAAGCCCTAGACTTCATCACCAGCAAGGGAGTGAAACTCGTCTCTATTGGAGCTGAAGAAATTGTGGATGGTAACATTAAGATGACTCTGGGAATGATATGGACCATCATCCTCCGCtttgccatccaggacatctctGTAGAAGaaACCTCTGCAAAGGAAGGCCTTCTCTTGTGGTGTCAGAGAAAGACTGCCCCCTACAGAAATGTCAATGTCCAGAACTTCCACATTAGCTGGAAGGACGGACTGGCCTTCTGCGCCCTGATTCACAGACACAGACCTGACCTTATCGACTATGCTAAGCTCAACAAGGATGATCCTATGGGGAACCTGAACCTGGCCTTTGAAATAGCAGAGAAGCACCTGGATATTCCTAAGATGCTGGACGCAGAAGACATCATCAACACTCCTAAGCCTGATGAGAGAGCTATCATGACCTATGTTTCCTGCTTCTATCATGCTTTTGCTGGAGCTGAGCAGGCTGAGACAGCAGCCAACAGGATCTGTAAAGTGCTGGATGTGAACCAGGAGAATGAGAAACTTATGGAGGAATACGAGAGGCTGGCCAGCGAGCTACTGGAGTGGATCCGCCGGACCACCCCATGGCTAGAGAATAGGGCAGCAGAGAAGACCATGGTTGAGATGCAGAGGAAGCTGGAGGATTTCAGGGACTACCGCCGCATGCACAAGCCCCCCAAGGTGCAGGAGAAGTGTCAGCTGGAGATCAGCTTCAATACCTTGCAGACCAAGCTGCGCATAAGCAACCGGCCTGCTTTTATGCCTTCTGAAGGAAAGATGGTATCTGACATAGCCAGTGCATGGCAGGGGCTGGAGGGGGCTGAGAAAGGTTATGAGGAGTGGATTCTGACTGAGATCCGCAGGCTGGAGAGACTGGACCACTTGGCTGAAAAGTTTTGCCAGAAAGCCACCACCCATGAGACCTGGGCTAGTGGTAAAGAGCTAATTCTATCTCAGAAGGACTATGAGACTGCCACCCTGACGGAGGTGCGGGCATTGCTAAGGAAACATGAGGCATTTGAGAGTGACCTGGCTGCTCACCAGGACAGGGTGGAGCAGATCGCTGCCATCGCACAGGAGCTCAATGAGCTGGACTATCATGGTGTGGCTTCTGTCAACAAGAGGTGTCAGAGCATCTGTGATCTGTGGGATCAACTTGGTACATTGAcccagaagaggagagaggctttGGAGAGGACAGAGAAGCTGCTGGAAACCATTGATCAGTTGTTCCTGGAGTTTGCCAAGAGATCAGCACCTTTCAACAACTGGATGGAAGGGGCTATGGAGGATCTGCAGGATATGTTTATTGTACACACGATCGATGAGGTCCAGAGCCTGATATCTGCCCATGAGCAGTTCAAGGCCACCCTCCCAGaggcagacggagagagacaggccATCCTGGGGATCCACAACGAGGTGCAGAAGATCTCCCAGAGCTACGGCATCAAGGCCAACCTCCTCAACCTCTACAGTACCATCACCACAGAGGAGCTCCTCGCCAAGTGGGACAAGGTGAAGAAGCTTGTTCCCCAGAGAGAAGGCTCCCTCCAGGAGGAGCTAGCCCGACAGCATACTAATGAAAGGTTGAGACGGCTGTTTGCTACCCAGGCTAACCTCATAGGACCCTGGATACAGACAAGGATGGAGGAGATTGGGCACTGCTCCCTGGAGGTGGGCGGTACATTGGAGGACCAGATGACCCAGCTGAAGCAGTTTGAGCACATCATCGTTACCTACAAGCCCAACATCGACAAGCTGGAGGGAGACCACCAGCACATCCAGGAGTCCCTGGTGTTTGACAACAAGCATACCAACTACACCATGGAGCACATCCGTGTGGGCTGGGAGCTCCTCCTCACCACCATCGCCCGCACCATCAACGAGATCGAGACCCAGATCCTGACCCGCGACGCCAAGGGCATCAGCCAGGAACAGATGCACGAGTTCCGCTCCTCCTTCAACCATTTTGACCGGAAGAAACACGGGGCGATGGACACTGATGACTTTAGGGCCTGTCTGATCTCCATGGGTTATGATTTGggtgAAGTGGAATTTGCCCGTATCATGATGCTGGTTGACCCCAGTGCCACTGGCATGGTCTCTTTTCAATCATTTATCGATTTTATGACCAGAGAAACCGCTGACACGGACACCGCCGAGCAGGTTGTGGCATCCTTCAGGATCCTGGCAGCcgataagCCCTACATCCTGGTTGAGGAGCTGAGGAGAGAGCTCCCCCCTGACCAGGCAGAGTATTGCATCTTGAGGATGCCCCGCTACAGTGGCCCAGGGGGATCCGCAGGGGCACTAGACTACACCGCCTTCTCCACTGCCCTCTATGGAGAGAGTGACCTCTAACCCTGCAAGATGATACCCAAAAGTGACCTCTTGACCCCACCTAATACGTCTGGATGAAATTCCCTTTAACCAAACACACAAATGAGTGGCGGTTACCTATGTTAGAGTCACAataggtagata

Function

NR:

description
alpha-actinin-2-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K21073 ACTN2_3; actinin alpha 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960072.1 False 3073 mRNA 0.51 22 27489213 27505393
XM_021580596.2 True 3009 mRNA 0.51 21 27489214 27505393

Neighbor

gene id symbol gene type direction distance location
LOC110503096 LOC106577060 coding upstream 3253 27473651 ~ 27485960 (+)
ecd ecd coding upstream 40572 27434812 ~ 27448641 (+)
LOC110502516 LOC106607607 coding upstream 74723 27400913 ~ 27414490 (+)
LOC110502514 LOC106608765 coding upstream 90875 27380259 ~ 27398338 (+)
LOC110502511 LOC106607602 coding upstream 342708 26695559 ~ 27146505 (+)
LOC110502522 NA coding downstream 3002 27508395 ~ 27516541 (+)
LOC110502523 LOC106607673 coding downstream 260425 27765818 ~ 27769060 (+)
LOC110503097 LOC106577081 coding downstream 285366 27790759 ~ 27848517 (+)
LOC110502527 LOC106607701 coding downstream 484852 27990245 ~ 27993189 (+)
LOC110502528 bic1a coding downstream 495898 28001291 ~ 28078254 (+)
G1849304 NA non-coding upstream 32366 27449059 ~ 27456847 (+)
G1849299 NA non-coding upstream 64224 27422204 ~ 27424989 (+)
G1849129 NA non-coding upstream 289213 27199787 ~ 27200000 (+)
G1849558 NA non-coding downstream 53446 27558839 ~ 27559542 (+)
G1849565 NA non-coding downstream 58468 27563861 ~ 27564082 (+)
G1849592 NA non-coding downstream 79095 27584488 ~ 27584826 (+)
G1849647 NA non-coding downstream 114925 27620318 ~ 27620535 (+)
G1849652 NA non-coding downstream 118711 27624104 ~ 27624403 (+)
G1849208 LOC106607606 other upstream 212954 27274338 ~ 27276259 (+)
G1845108 NA other upstream 3134967 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 4142724 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 6704010 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 6972327 20358591 ~ 20516930 (+)
LOC110502541 LOC106607837 other downstream 992630 28497576 ~ 28571528 (+)
G1851386 NA other downstream 1537968 29043361 ~ 29075998 (+)
G1852590 NA other downstream 2513097 30018490 ~ 30025046 (+)

Expression


Co-expression Network