LOC110502523 (LOC106607673)


Basic Information

Item Value
gene id LOC110502523
gene name LOC106607673
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27765818 ~ 27769060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580597.2
CAGGAAGTCATAATGAGCTCCAACAGCACAGACCTTGGCCTGTACCTGACCGTCAGCTCCCCAGGAATGGGCATTGACGACCCAGACACCAACGCTCTCCACAAGGACATCTGGCAAGAGCTAACCAGCCCCGATGACAATGACTCCATCAGTGGCCTCTTCAATTTTACAGGGTCGCACAACGAAACAGTGACCTCTCTGACCTATGACCCTCTTGGGGGTCACACAGTGTGGCAGGTGGTCCTCATTGTCTTTTTCACCGGCCTCCTGTCCCTGGTCACCATAATCGGCAACATCCTGGTGGTGGTATCCTTCAAGGTAAACCGCCAGCTCAAGACTGTCAACAACTACTTCCTGCTCAGCCTGGCCGTGGCTGACCTCATCATCGGGGTCATCTCCATGAACCTTTACACCACCTACATCATCATGGGCCAATGGGCGCTAGGCAACTGGGCCTGTGATCTGTGGCTGGCTATTGACTATGTGGCCAGTAACGCATCAGTCATGAACCTGCTGGTCATCAGCTTTGACCGCTACTTCTCCATCACCCGGCCACTCACCTACCGGGCCAAGCGGACCACACGGCGGGCTGGCTTGATGATCGGCATGGCCTGGTTCGTGTCCCTGGTCCTGTGGGCCCCAGCCATTCTATTCTGGCAGTACTTTGCGGGGGAGCGCACAGTGCCCCCTGATAAGTGCTACATCCAGTTCCTCTCAGAGCCCATCATTACATTCTGCACGGCTATTGCTGCCTTTTACTTGCCTGTCACTATTATGAGTGTGCTCTACTGGCGTATCTACAGGGAGACGCAGAACCGCGCACGGGAATTGGAGGGCCTGCAGGGCTCAGGGAGccgagggaggggtggagaaagggCTCACTTCGTCCACCACCAGACTGGGAGCGCCAGGAGCTGCAGCAGCTATGAGCTAAGCCAAGTTTCCCAGAAGAAGAGCCCCAGCCAGGCGCTGGCCGCACGCTTCCACTGTTGGCCCATGATGTGCTCCTGGAGGCCTGGCAGCGCCCGGCCCATAGAGGGGGATGCCGACCACAGCAGCAGCGACAGCTGGAACAACAACAACGCCGGGCTGTCAGTGGACCACTCGGGCTCGTCTGAGGATGAGGAGAGAAATGGTAGAAGGATGATGCCCCAGGACCACACCATCTTCTCCATAGTGCTCAACCTGCCAGGGATGAAGGCAGCCGTcaactcccacctcacctcctgCGAGGACCTGGACATAGCCTCAGAAGAGGACACCCTGAGAGGGGAGGAGGGCAGTCGGGGCAGCCtctctaccatcaccaccaccaccactactaccacccctGATGGGGCCAACACAGACACCAACAGCTACCAACAACGCTTTTCCTCCCGGATCTCCAGAGTCCAGTCCATGCCTGCCATCCAGGCCACCAGAGTGGGGCCACTCTCTGGCTCCCCTGCCACAACCACCAAATCACCCTCGATGCCAATCTCCTTCAGAGAGGCAGCTCTAGCCAAGAGATTTGCCTCCAGGGCACGGACACAGATCACCAAGCGCAAGCGCATGTCTCTGGTAAAGGAGAAGAAGGCGGCACAGACCCTCAGCGCCATTCTGTTTGCCTTCATCATCACATGGACACCCTACAACATCATGGTGCTGGTCAACACCTTCTGTAATGGCTGCATCCCCGAGGCTCTGTGGGCACTGGGATACTGGCTGTGCTACGTCAACAGTACCGTCAACCCCATGTGCTATGCCCTGTGCAACAAGACCTTCCGTACCACCTTCAAGATGATACTGCTCTGCCACTGGGACCAGCGCAAGCGGCGGCGGAAGCAACAGTTCCAGGCACGGCAGTCCGTAGTGTTCCACAGGAGAATTCCTAAAAACTCAACGTAGTGAGATATATAGACCCAGTGGGAATCGGGTGATGAAGATGATGAGTCTAGAATCTGACAGCTCAGTGGATAGACGAGGCATCCTAAAGATTCTGTCTGTGGTGTTTAACTGCACAGAGATTCACAAGGAGGCAGCCatgttgctgctgtgatggctgATGTTCTCTGTGTAGCCACAACCTCCCAAGTGACATATTCCTCTGTTTCTTCAGGAGAGCTCCTGTGGTGAAAGGTTCCTCTAGATTGATCATTGCAGAGAAGTGCAGCTAAAAAGACTGACAGTGAAAACGAATAGAGCAAGGGCTTTAAATGCATTGGGCGGACAATTCAAAGTGCAATTGATACCTAGGGAGATTATATGATGTAACATTTCTAATGGATTTGGGGTTTTCCATTTCTTACCATTCATTTTGTGGTAGTCAGATCTGTAACGTACAGAGCAGTTTGGATTTTCAAAGTCAACTGCATCTGTACTGTAATATAGTATATAAAGCAAAGGCCAAAACATTTTGTGTCAATAGACTGCACTGTATTGATTTTGAGCTCCCTTTTGGCTAACTGAATTTGATTTATTTGTTATATAtggttttttttttactctgatgTCTGTACATTGCCTTACACTTGGATATTGCTTTCTTGAGTCTTAGAAGACGAGAGGATTTAAAACAAAACAGTGTCCTATTTATGACGACCAGTTTTTCAAAGTTTTTGGTTGTTTTTGTATATACATTGGTCTATAGTTTTTCCTCTATAGATTCTGCGCCAGTCTGAAAAAAGTTTTGAATTTTGACAATTCTACGGCACTTCAATGAGCTGCTCGTGTTCTATGTGAGTTGTTGTTTACATGGTAGAGACAATAAGTGAATCAACTTATTCAATTGTTGTTTACGTTGAGAGTAATGGTATATTGCTATTTCTACCTTGATACTTAAAGATTTATTGTACACTAAATAGATCAGTCACTATGAATTGTAATGTTTTGATTTATTAGATTATATTTGAAAAGGTTTCTCCATTTCTTCTCACTGGCTGTCCGAATGTAATCCTAAAATATTGGTCTGTGGTCCCTAGATGAACACTCTCTTTCTCCTAGAGGATTTAGCAGTGCCACAGCAGCATCTGCTGGATGAATAGAATTATACACAAGTAACTTCCAGTTTACTTCCGTCAGGGAAATGCTGTTGTGGGGCCATAAATGGGAGATTGGGTGGGTCAATGTCTGTACTCTACTTGACTCCTCCGTGCGCCTCTCCTCCGTTACCTGGAAACCGAAAAATGGTAGCCatacagtgcatccggaaagtattgagaccccttcactttttccacattttgttacattacatacTTA

Function

NR:

description
muscarinic acetylcholine receptor M3-like

GO: NA

KEGG:

id description
K04131 CHRM3; muscarinic acetylcholine receptor M3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580597.2 True 3243 mRNA 0.49 1 27765818 27769060

Neighbor

gene id symbol gene type direction distance location
LOC110502522 NA coding upstream 249277 27508395 ~ 27516541 (+)
LOC110502521 LOC106607666 coding upstream 260425 27489213 ~ 27505393 (+)
LOC110503096 LOC106577060 coding upstream 279858 27473651 ~ 27485960 (+)
ecd ecd coding upstream 317177 27434812 ~ 27448641 (+)
LOC110502516 LOC106607607 coding upstream 351328 27400913 ~ 27414490 (+)
LOC110503097 LOC106577081 coding downstream 21699 27790759 ~ 27848517 (+)
LOC110502527 LOC106607701 coding downstream 221185 27990245 ~ 27993189 (+)
LOC110502528 bic1a coding downstream 232231 28001291 ~ 28078254 (+)
LOC110502531 LOC106607719 coding downstream 329387 28098447 ~ 28140673 (+)
LOC110502539 LOC106607826 coding downstream 693395 28462455 ~ 28466290 (+)
G1849652 NA non-coding upstream 141415 27624104 ~ 27624403 (+)
G1849647 NA non-coding upstream 145283 27620318 ~ 27620535 (+)
G1849592 NA non-coding upstream 180992 27584488 ~ 27584826 (+)
G1849565 NA non-coding upstream 201736 27563861 ~ 27564082 (+)
G1849558 NA non-coding upstream 206276 27558839 ~ 27559542 (+)
G1849660 NA non-coding downstream 975 27770035 ~ 27770506 (+)
G1849658 NA non-coding downstream 2859 27771919 ~ 27772208 (+)
G1849821 NA non-coding downstream 105384 27874444 ~ 27876182 (+)
G1849835 NA non-coding downstream 126069 27895129 ~ 27907142 (+)
G1849208 LOC106607606 other upstream 489559 27274338 ~ 27276259 (+)
G1845108 NA other upstream 3411572 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 4419329 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 6980615 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 7248932 20358591 ~ 20516930 (+)
LOC110502541 LOC106607837 other downstream 728963 28497576 ~ 28571528 (+)
G1851386 NA other downstream 1274301 29043361 ~ 29075998 (+)
G1852590 NA other downstream 2249430 30018490 ~ 30025046 (+)

Expression


Co-expression Network