LOC110503097 (LOC106577081)


Basic Information

Item Value
gene id LOC110503097
gene name LOC106577081
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27790759 ~ 27848517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110503097
ATGTCTTCTCTGGAGGACCAGCTATATACCTGGGCTACTTTCGGCCTGCCCTCCTACCTCTGGGTGCCCCATGAAGGGCATACCCCAGGCCGCATCAAGGCCTTGAGGCACCCTCCACAGCCAGCTCAGAATTCATCAAAGTCAGGGAATCTGTCACAAGAAGATAATGGCAGTGATATTCCAGGGCTGGAGCGGATCATCAATGACTTGAGGATAAAGATTGCAGCACTGGAAATCCTGCATGCATCTCTGGAGATGGAGGTCCACTCTAAGGAGAGTGGGGATAGGGACAATACTGTGGCCTTAGGGGGTGTCAACCACACATGGACGAAGAGGATGGAGGTTTCCcagcagcagagtggTACCCAGCCACCACCTCCCCCCAACCCAGATAtaccccctcctcttcttcctcctccccctcatcctctACCTCAGCTCTCTGGAGGGCCAccaccaccccctctctctggtggggctggtcctcctcctccaccccttcctcctcctttACCTGGTATGTGCAGACCCTGTCCCCCATCTCCACCCCCTCCCCTGCAGAGCTTTGgacctccacccccaccccctctacCAGGTAAgggcccccctcctccacccacaCCCCCCAGCAGTGGACCTTCATCTACCCCAGGCTTtggccctcctccccctcccggAGGTTTCAAGGTCTCCATGGCCCAGGAGGCTGGCCCCCAGAAGCCCCCCATCGAGCCCCCAAGCCCATGAAGCCTCTCTACTGGACCAGGATCCAGCTGCATTCTAAAAAGGATGCGAGTGGTTCTTTGGTCTAGGAGAAGATCGAGGAGCCATCAGTGGATTTTGATGAGTTTGTTGAGTTGTTCTCCAAAAGTTCTATGAAGGAGAAGACGCCATCACCAAGTCCAAGGCCAAACAGgtggtgAAGCTGTTGAACACCAAGCGATCACAGAACGTGGGGATCTAGCATCCATGAAGGACATCCAGAATGCCATTCTGAACATGGACAACACTGTAGTGGACCTTGAGACCTTGCAATCGCTGTATAGCAAGAGAGTCCAGCAAGATGAGATGGAGAAGATTGAGAAGCACATCAAATCATCCAAAGGCAAGAACGACGCAAAGCCATTGGACAAGCCTGAACAGTTTCTCTTCCAGTTGTCCCAAATCCCCAATTTCTCAGGAAGGGTGTTTGGCATCCTCTTTCAATCAACCTTTGTTGAATGTATCTCCTCCATCATCTGGAAAGTAGAAATCTTCAGAGAGTGTGTACAGTAAACTCTGCAGAGTGATCAGTGTGTGTTGCAGGTGCTAGGCCTCATCTTAGCTTTTGGGAACTTCATGAACGGAGGGAACCGATCGCGTGGGCAGGCTGACGGATTCACTCTGGACATCCTGCCAAAACTCAAGGACATCAAgagcagtgaTAACTGTCTTTGTCTTTTGTCATACATCGTTGCTTACTATCTAAGGAACTTTGATGAGGATGCCAGTAGAGAGACATGTGTCTACCCTCTCCCTGAACCCCAGGACCTCTTCTAGGCCTCTCAAATGAAGTTTGACGACTTTCAGAGAGACCTACGCAAGCTAAGGAAAGATCTTAATGTATGCTCGGCCGAGACAGAGATGGTCAACCAGGTCTCTTCTGGAGAGCACTTGCAACCCTTTAAGGAGAAGATAGAGGCATTTCTGAGTGAAGGTGTCCCAGTTGTGGTTACTTTACAAATGACTCAATCACTGAGGCCATTTGGGGTTGTGGGTGAGACAAATGGACCATTGATCATTGACAAGGGAAGCCATTTTGGTTTTTCAACTGAGAGTCAAGCTTCAAAATGGGTCATTGATCCACCTTATCCTTGGTTAGCTAAACTATAGCTGCCCCAAAGACGAAGGCCAATGACTAATGGCTCAGATATCTCCCTGGATTATGTTCAGTGTCAGAATACCTGAAATGAGGAAGCCATCTTGGCACTGTATATAGAATAGAACGTAGAGATGGGCCATTGATCATCATGCTAACCCTTGGTTAGACTACACTGCATCTGTCCAGCCAAGACTGATGTCTCAGTTGCTCTCCTGGTTAATGTACAGTGTTTGGAAGGAAGATGTGTACAGACCATCATTCAACGCAGTTTCCATGGGGACCTCTGCTTATCCCAGGCTGTATTGAATAACTCAAGGCTATTGTTTCAACTTTTTCCATCTGTTATGATAGATTGCAGCAGCACTTGGTAGTTGAGCCTTTGACCTCTGTCTGAAAGATATTTCAAGAGCAGacctacattttagtcatttagcagacgctcttatcgaGAGTGACTTACATTAGTGAATTCATCATTAGACAACAATGTTTCACAATCCTAgaaagtacattttccctcaacaaaGTAGTTATctgcaaagtcagtgctagtaggaaaaggtggcagaatggagtgctcgggttggggtatagggtttGAACATATCCTAAAGGTAGGGAAGGGCAGTTCCCCTTGTTGCTCCGTAGGCAAGCACCAAGGTATTGAAGATTAtgtgagcttcgactggaagccagtgtagTGTGCGGAGGAGCAAGGTAGCAtaggagaacttgggaaggttgaacaccaggcgtGCTGTGGCGtactggataagttgcaggggttttgatggcacaagcggggagtcCAGCCAAcagagttgcagtagtctagacGGGATATGACAAGTGCATGGATTAGTACCTGTGGCGCTTCTTGTGTGAGGAAAGGTCATACTCTACGGATGTCAaggctttgatgtttgcagagaatgatGTGTtatccagggtcacgccaaggttctttgctcTCTGGGAAGGGGACACCATGGAGTTGTCAGCCATGATTGAGAGGTCTTGGAGCtggcaggccttccccgggaaAAAGAGCAGCTACATCTTGTCGAGGTTAAGCTTggggtggtgggccgacatccaagctgagacgTCTGCCAGGCAATCAGTGATGTGCGTCGCCagctgggtgtcagaagggggggggggggggtagttcagtgtcatccacatagcaatgataggggagaccatgtgaggatatgacagagccgagtgacttggtgtaaaTAATCGAGGACTGAAGGACACAAGTAGTGAGAAGCAGTTGGAACAGACACAGACCCTCTCCACGCCTGCTGGTAGGAATATAAGAGGAGAGCGGTCTCATTTGAGTGAGCCaccttgaagcctgactggttagggttaAGAAGATCATTCTGAGAGTGATAACGAGAGAATAGGTCATAGACAGcatgctcaagtgttttggaactAAAACACAGAAGGGATACCGTTTTGTAGTTTTTTACTTTGGAGGGGtcaagtgttggtttcttgaggatgGGAGCAACCCTGGCCATCTTGAAGTCAGAGGATGCAGCAagtgatgagttgatgagggaagtaaGGAATGGTAGGTCTTCAGAGATGGTctagagaagggaagaggggatgTGGATAAGTCGGTAGGTGGTCGGGCTGCCAGACATCACTAGTCGCAGGATTTTAtctggagagaaaggggagaaagaggtcaaagTGTAGGGTAGTTCTGTTAGAGTGGGACCAGTGGAGTCAGTAGGCTAAGGGAACGAGGAACAGATGTCGTAAACCTTTTTTTCAAATTGGTCGACAAAGTCCTCTGCAGAGCAGAGCAAGGGGCAGGAGGTGGTAGGCGAACAGCTTCTAGTGAGTGGGCAGGGTATACTAAATTAGAAGGGAATGTAGCCAAGGGGTGGGGAGcgtctgtaaaacctacagggagagaagagaacagggataggaaacacacacatacttgaCAAAGCTGCAAAAGAGCCAAATTGGATCATCAGAAGATAACTAGGTGAGATACTCAAGTGAGAGAGTGAtgtggagccttcctcctctttccttcctcaAACCGCTTGGCAGAAAGTCTTCATTTCAGCGACAACACCACCGCTTGACAAGACCGCCAGCTGCCACTGAATAAACACTCGGAGACTGAAGCACTAACACTAATCGTGTATTGCCCAGCAGAGGTGAAAGATGCAGCTCCCACCACTAATTGCTGGTAGAGTTGAAGAAAACACAGAAAACACCCCCTACAACACAAGACGATTGCTGAAATAGGCCTGAAACTAAGTCCACAGAAACGGACACAAATAATGAGCGAACAGACAGTTCAAACAGCAATGATTAAGTAGGCTACTAGGTAGGACAGCACTTAAATTCAATTGCCTTCGCAAGACAATACCAACAGATACTTATTGaataaaaaacagatactttCTTCTCTTGTAGGAGCTGATATCCTTCCAAACTATAGATGATGTACATCCAGGCCAAATATGAACACATCATGAGGGCTGTTGGCAGAATTGGACCCTGACAAGGTAGATAGTGTTATCTCGAGGCGAAAGATAcaaacacctatttaggcgaggtgctagctagcggagtagaacacttgaaaaatgaaaggagagccacacactctaggagctcagatacaATCATTGAATAACCTAATATCCAACGTTtcaacagacaagctgtcttcatcagggtataatgacaaacactgcaggGTGACTAGTTTACAGTATatagtgtcaaaggacacacacaggtgtttgTAATAATGGCCTGaggtggcctgatatcattggttaat
>TU2117354
AAAGTCTTCATTTCAGCGACAACACCACCGCTTGACAAGACCGCCAGCTGCCACTGAATAAACACTCGGAGACTGAAGCACTAACACTAATCGTGTATTGCCCAGCAGAGGTGAAAGATGCAGCTCCCACCACTAATTGCTGGTAGAGTTGAAGAAAACACAGAAAACACCCCCTACAACACAAGACGATTGCTGAAATAGGCCTGAAACTAAGTCCACAGAAACGGACACAAATAATGAGCGAACAGACAGTTCAAACAGCAATGATTAAGTAGGCTACTAGGAGCTGATATCCTTCCAAACTATAGATGATGTACATCCAGGCCAAATATGAACACATCATGAGGGCTGTTGGCAGAATTGGACCCTGACAAGACTGAAAATGGGGGGTCTTCAATCAAGCCAGAGAGAAGGCCTCGTACAGCATCAAACCCAAACAGTCTTCTGGAATAAAAGCCAAACTGGGTCAGTAGATCTGAGCCAATGGACTGGTCTTATCCAGGATAAGTTTGCACAAattgggattcaaatggatttcactgcagtgtttttgtcaatgatctacacaaaatactctgtaatgtcaaagtggctTTTTGCTTTGAACATTTGTAAAAGATGAAtgtaaaataaaacactaatatctttattagataagtattc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110503097 False 4697 mRNA 0.41 13 27790759 27840339
TU2117354 True 663 lncRNA 0.41 5 27839595 27848517

Neighbor

gene id symbol gene type direction distance location
LOC110502523 LOC106607673 coding upstream 21699 27765818 ~ 27769060 (+)
LOC110502522 NA coding upstream 274218 27508395 ~ 27516541 (+)
LOC110502521 LOC106607666 coding upstream 285366 27489213 ~ 27505393 (+)
LOC110503096 LOC106577060 coding upstream 304799 27473651 ~ 27485960 (+)
ecd ecd coding upstream 342118 27434812 ~ 27448641 (+)
LOC110502527 LOC106607701 coding downstream 149906 27990245 ~ 27993189 (+)
LOC110502528 bic1a coding downstream 160952 28001291 ~ 28078254 (+)
LOC110502531 LOC106607719 coding downstream 258108 28098447 ~ 28140673 (+)
LOC110502539 LOC106607826 coding downstream 622116 28462455 ~ 28466290 (+)
LOC110502541 LOC106607837 coding downstream 657237 28497576 ~ 28571528 (+)
G1849658 NA non-coding upstream 18551 27771919 ~ 27772208 (+)
G1849660 NA non-coding upstream 20253 27770035 ~ 27770506 (+)
G1849652 NA non-coding upstream 166356 27624104 ~ 27624403 (+)
G1849647 NA non-coding upstream 170224 27620318 ~ 27620535 (+)
G1849592 NA non-coding upstream 205933 27584488 ~ 27584826 (+)
G1849821 NA non-coding downstream 34105 27874444 ~ 27876182 (+)
G1849835 NA non-coding downstream 54790 27895129 ~ 27907142 (+)
G1850012 NA non-coding downstream 388222 28228561 ~ 28230666 (+)
G1850667 NA non-coding downstream 620908 28461247 ~ 28461479 (+)
G1850669 NA non-coding downstream 626955 28467294 ~ 28467615 (+)
G1849208 LOC106607606 other upstream 514500 27274338 ~ 27276259 (+)
G1845108 NA other upstream 3436513 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 4444270 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 7005556 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 7273873 20358591 ~ 20516930 (+)
G1851386 NA other downstream 1203022 29043361 ~ 29075998 (+)
G1852590 NA other downstream 2178151 30018490 ~ 30025046 (+)

Expression


Co-expression Network