LOC110502526 (LOC106607693)


Basic Information

Item Value
gene id LOC110502526
gene name LOC106607693
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27850104 ~ 27859306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580601.2
GTATTGAAGACTTTCCAGTGGCACTGGAACACCCCTAATCATTTTACCCACCTCATGTTCAGGTGAGAAGAAAGGTGGAtatatggaaagagagagagagagatgagtatgAAAGTGAGCTAGAGACGAAGGGTAAGCCAGGGAGGAAATTGCGTGAAGGGGAAATGGTGGGAGAGCAAGAGGGATTTGGGGTATCAGACTAAGAGAGGGAGTAATAGAGGGAAGAAGGGAAccgggagggagagagcaaaagACTGACGGGATTTCAAGACTGGAGAGTCAGCAGTGAGTATGTTTGtggaaagaggaggggggataagTATTGAGAAAAAGAGgtagggaagggagagaggtgaggctTGGTTTGATTCATGTTGTGATCAGAGCCAATAGAAAGCCCCCGTCTATGTCTAGGAGGAAGCAGAAGTGAGAGTCCAAACCCAGCAGGAGACATACAGAGACGCACAAACCTACAGACACAGAACTAGGATACACAGACATAGAAACCCATTGGCATGGAAAGAAAGATTACAGAGAAAGGTTAAGAGATAATGACATGTATTATTAGATAATATATATTTGAGATGGATATGAGATAGACATGGATTATTAATAAACTCAAAAATACAGACTCAGTGGAGAGAAACAGGACCACAGACCTTGGGACACGCAACTGACAATCCACCTCAGCAACCACTGCTGTTCCCATGGAAACCAATACCAGGATTCACTCTCCAGGACTGGTAAGGGTGGACAGCTACCCCTAACAGAGACAGGATCACCCCACTGTCCCGGGACACTGTGGCAAGAGAATGTTTTGGAGAATCACTCTTCCAGTCCTACTGGCTGGGGTACTCTGCGTAGCCACAGAAACAAGGAAGCCCCGTCCCCAAGGCTCCATCCCCTCACCTTTCAAGACCAAAGGCAACCTGTCAGATCGTCAGCGCCTGTTGCCGCGGAAACCCGAAGTCCTTTCGTCAAGTCGGGAGGCCCTGGTGGTCACCGAGCGCCGGTACCTCCGACGTGACTGGTGCAAGACGCAACCCCTCCGCCAGACGGTGAGCGAGGAGGGCTGCCGAAGTCGTACGGTGGTCAACCGCTTCTGCTACGGCCAGTGTAACTCCTTCTACATCCCCCACCTCATGGGCCCCAGCTCAAATCGAGGCCCAGGGTCCAGCCGGAAAAACCACAACAAGGTCCAGGAGCCCTTCCAGTCCTGTTCCTTCTGCAGGCCACACCGCTTTACCCAGCTCACTGTTCAGCTGGACTGTCCGGGCCTGCAACCTACCTTTCGCCATCGCAAGGTACAGCGTGTCAAACAGTGTCGCTGTATGTCGGTGGACGTGACTGGCAACGGGAAACTGTGAGGAGTTCTTTGGAACCATACCATGACAGTCACCATGGATACTAATGTGACAGTGAAAGTGAACATTAACATGAACATGAATAGCATAGATATGACAGGGGACATGCTAGTACTTCTCCCTTATATTGGGTTATTCTGCATAATCACTTTGATTGGTCACACAAAATGAACCTGACAGGTACTGATAGTACAGAGTGACCCAGCTATAAGACCTTTGACTATATGGGCAGCTATGGTGAAAACTACAATGTGCAGACATAAATGGATGGATGCATAGCACAACACCAACTGAAGCGCAGACATGTTTCAGTTCAACGCAGTCAATCATATGAAACAACTGGGTCCTTCAACTCTTTATAAGCTCATACAGGTTGTGATATTACCTTACCTAGGGCCATGGACTGATGGCCCCTTTCATCTGACTGTTGGCTCTAGAAGGAACATACATATAAAACCACAAACACAAACAAGTTCTAGACTGAAAGTGGAGCTCTTAAGCTGGCTGTGTCATGTTTTACTCGGTTTACCTGGGGGAACTCTCCAGCCAATAAGGCTACGGACTGAGAGAAAGCCCCCATAGCCTGTCTAAGTTTCTGCCTTTTTAATTCAAGAGCCGCCTGTGAAATAATTCTGACAAACATCAAGCTAACCAGTAAAgaaattatattattatattatgtataACTGTGGTACTATATAAGTATATGTCAAAAGATAAGacactataaatatatatacaatcTA

Function

NR:

description
gremlin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580601.2 True 2110 mRNA 0.47 2 27850104 27859306

Neighbor

gene id symbol gene type direction distance location
si:ch211-248a14.8 LOC106608780 coding downstream 396224 27449622 ~ 27453880 (-)
LOC110502517 LOC106607615 coding downstream 414262 27423892 ~ 27435842 (-)
LOC110502513 LOC106607606 coding downstream 539933 27252967 ~ 27310171 (-)
cuzd1.2 LOC106607512 coding downstream 1384214 26457010 ~ 26465890 (-)
LOC110502503 hmx3 coding downstream 1443550 26403613 ~ 26406554 (-)
LOC110502525 LOC106607696 coding upstream 786 27860092 ~ 27983425 (-)
LOC110502532 NA coding upstream 256289 28115595 ~ 28120442 (-)
fam13c LOC106607716 coding upstream 279862 28139168 ~ 28148897 (-)
LOC110502533 mot9 coding upstream 321780 28181086 ~ 28197583 (-)
LOC110502534 LOC100380754 coding upstream 344638 28203944 ~ 28227097 (-)
G1850249 NA non-coding downstream 75702 27774132 ~ 27774402 (-)
G1850248 NA non-coding downstream 77854 27771213 ~ 27772250 (-)
G1850246 NA non-coding downstream 80651 27768955 ~ 27769453 (-)
G1850245 NA non-coding downstream 81438 27767804 ~ 27768666 (-)
G1849641 NA non-coding downstream 233127 27616567 ~ 27616977 (-)
G1850380 LOC106607701 non-coding upstream 130878 27990184 ~ 27992969 (-)
G1850489 NA non-coding upstream 277258 28136564 ~ 28137101 (-)
G1850494 NA non-coding upstream 290309 28149615 ~ 28149901 (-)
G1850718 LOC106607826 non-coding upstream 605282 28464588 ~ 28466261 (-)
G1846858 NA other downstream 2409717 25439807 ~ 25440387 (-)
LOC110502462 LOC106607169 other downstream 4504333 23344353 ~ 23358461 (-)
G1843946 NA other downstream 4616681 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other downstream 4631834 23213905 ~ 23218749 (-)
G1841959 NA other downstream 6478305 21345514 ~ 21371799 (-)
G1850441 NA other upstream 215619 28074925 ~ 28078251 (-)
LOC110502553 NA other upstream 1065433 28919846 ~ 28932600 (-)
LOC110502574 LOC106608078 other upstream 3292303 31151609 ~ 31239202 (-)
G1854905 NA other upstream 3358291 31217597 ~ 31218171 (-)
G1855326 NA other upstream 4120691 31979997 ~ 31981333 (-)

Expression


Co-expression Network