LOC110502527 (LOC106607701)


Basic Information

Item Value
gene id LOC110502527
gene name LOC106607701
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27990245 ~ 27993189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580602.2
TTGCTTCCTCGAACAAAAAGCGGAAACAAAAGAAATCATACATATCTCAAAACTAATTTTTGTGAGCTGAGCCGAGAAACGGGTATACAACTGACAGTGTCCAGTCGTTACATCATACATCTAAAGCAGGGGGCTGACATGGCTTTGAAAAGAATACAGAAGgagTTGCATGACTTGCAAAGGGACCCTCCTGCTCAATGCTCAGCTGGACCAGTTGGAGAGGACTTGTTTCATTGGCAAGCCACCATCATGGGACCTACTGACAGCCCATATCAGGGAGGAGTATTCTTCCTCACCATCCACTTCCCCACAGACTATCCCTTCAAACCACCAAAGGTAGCCTTCACAACGAAAATCTATCACCCAAACATAAACAGTAATGGTAGCATTTGTCTGGACATTCTGAGGTCACAGTGGTCCCCAGCACTTACAGTTTCGAAAGTTTTATTGTCCATATGTTCTTTGCTATGTGACCCAAACCCAGATGACCCCCTAGTCCCAGACATAGCACACATCTACAAGCAGGACAAAGAAAAGTACAACAGATTAGCAAGAGATTGGACTCAAAAGTATGCAATGTAAAGGACTGACGTTTTAGACAACGGAAAAAGCTTAAGCAAATGTATTTCCTGGACACCTCTGAAAACAAAGTACTGTTGCCACCCCTCATCCACACTGGTTCAAGAAAGTGTTTTATATGGGAAGCACTTTCTATGCCCAAATTAACTGTTTTTATGCTTTGAACTCATTATTTTCTTTGACATTCCCAATGTTATATAAATTATTATTCAGTTATTGCTGAGATGGCCATaaagatttaaaaatatatatatgaatcCAGTCCCATCCCTCATCTTATAGGtaattttttctttattttagatATTTTTATTGTATAGTATCAAGCTATACTTAATCTATTTTTATTATTTTGCATTAAAAAGTAAAACAAATGGATCTTGTCTTTATTGTGATACTGGAGATGCGTTGTATTGTGATTTCCAGTTCTGGACCTTAATGTTTAGAGAAGTACAGTATTTCTTTCCCATTGTGCATCAACCCTTTAACTGAAGTGA
>XM_036960350.1
TTGCTTCCTCGAACAAAAAGCGGAAACAAAAGAAATCATACATATCTCAAAACTAATTTTTGTGAGCTGAGCCGAGAAACGGGTATACAACTGACAGTGTCCAGTCGTTACATCATACATCTAAAGCAGGGGGCTGACATGGCTTTGAAAAGAATACAGAAGgagTTGCATGACTTGCAAAGGGACCCTCCTGCTCAATGCTCAGCTGGACCAGTTGGAGAGGACTTGTTTCATTGGCAAGCCACCATCATGGGACCTGTAGCCTTCACAACGAAAATCTATCACCCAAACATAAACAGTAATGGTAGCATTTGTCTGGACATTCTGAGGTCACAGTGGTCCCCAGCACTTACAGTTTCGAAAGTTTTATTGTCCATATGTTCTTTGCTATGTGACCCAAACCCAGATGACCCCCTAGTCCCAGACATAGCACACATCTACAAGCAGGACAAAGAAAAGTACAACAGATTAGCAAGAGATTGGACTCAAAAGTATGCAATGTAAAGGACTGACGTTTTAGACAACGGAAAAAGCTTAAGCAAATGTATTTCCTGGACACCTCTGAAAACAAAGTACTGTTGCCACCCCTCATCCACACTGGTTCAAGAAAGTGTTTTATATGGGAAGCACTTTCTATGCCCAAATTAACTGTTTTTATGCTTTGAACTCATTATTTTCTTTGACATTCCCAATGTTATATAAATTATTATTCAGTTATTGCTGAGATGGCCATaaagatttaaaaatatatatatgaatcCAGTCCCATCCCTCATCTTATAGGtaattttttctttattttagatATTTTTATTGTATAGTATCAAGCTATACTTAATCTATTTTTATTATTTTGCATTAAAAAGTAAAACAAATGGATCTTGTCTTTATTGTGATACTGGAGATGCGTTGTATTGTGATTTCCAGTTCTGGACCTTAATGTTTAGAGAAGTACAGTATTTCTTTCCCATTGTGCATCAACCCTTTAACTGAAGTGA
>TU2117481
AAGAAATCATACATATCTCAAAACTAATTTTTGTGAGCTGAGCCGAGAAACGGGTATACAACTGACAGTGTCCAGTCGTTACATCATACATCTAAAGCAGGGGGCTGACATGGCTTTGAAAAGAATACAGAAGgagTTGCATGACTTGCAAAGGGACCCTCCTGCTCAATGCTCAGCTGGACCAGTTGGAGAGGACTACTGACAGCCCATATCAGGGAGGAGTATTCTTCCTCACCATCCACTTCCCCACAGACTATCCCTTCAAACCACCAAAGGTAGCCTTCACAACGAAAATCTATCACCCAAACATAAACAGTAATGGTAGCATTTGTCTGGACATTCTGAGGTCACAGTGGTCCCCAGCACTTACAGTTTCGAAAGTTTTATTGTCCATATGTTCTTTGCTATGTGACCCAAACCCAGATGACCCCCTAGTCCCAGACATAGCACACATCTACAAGCAGGACAAAGAAAAGTACAACAGATTAGCAAGAGATTGGACTCAAAAGTATGCAATGTAAAGGACTGACGTTTTAGACAACGGAAAAAGCTTAAGCAAATGTATTTCCTGGACACCTCTGAAAACAAAGTACTGTTGCCACCCCTCATCCACACTGGTTCAAGAAAGTGTTTTATATGGGAAGCACTTTCTATGCCCAAATTAACTGTTTTTATGCTTTGAACTCATTATTTTCTTTGACATTCCCAATGTTATATAAATTATTATTCAGTTATTGCTGAGATGGCCATaaagatttaaaaatatatatatgaatcCAGTCCCATCCC

Function

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 D4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580602.2 False 1076 mRNA 0.38 7 27990245 27993189
XM_036960350.1 False 998 mRNA 0.37 6 27990245 27993189
TU2117481 True 789 TUCP 0.41 6 27990274 27992963

Neighbor

gene id symbol gene type direction distance location
LOC110503097 LOC106577081 coding upstream 149906 27790759 ~ 27848517 (+)
LOC110502523 LOC106607673 coding upstream 221185 27765818 ~ 27769060 (+)
LOC110502522 NA coding upstream 473704 27508395 ~ 27516541 (+)
LOC110502521 LOC106607666 coding upstream 484852 27489213 ~ 27505393 (+)
LOC110503096 LOC106577060 coding upstream 504285 27473651 ~ 27485960 (+)
LOC110502528 bic1a coding downstream 8102 28001291 ~ 28078254 (+)
LOC110502531 LOC106607719 coding downstream 105258 28098447 ~ 28140673 (+)
LOC110502539 LOC106607826 coding downstream 469266 28462455 ~ 28466290 (+)
LOC110502541 LOC106607837 coding downstream 504387 28497576 ~ 28571528 (+)
LOC110502542 LOC106607841 coding downstream 604724 28597913 ~ 28603119 (+)
G1849835 NA non-coding upstream 83103 27895129 ~ 27907142 (+)
G1849821 NA non-coding upstream 114063 27874444 ~ 27876182 (+)
G1849658 NA non-coding upstream 218037 27771919 ~ 27772208 (+)
G1849660 NA non-coding upstream 219739 27770035 ~ 27770506 (+)
G1850012 NA non-coding downstream 235372 28228561 ~ 28230666 (+)
G1850667 NA non-coding downstream 468058 28461247 ~ 28461479 (+)
G1850669 NA non-coding downstream 474105 28467294 ~ 28467615 (+)
G1850688 NA non-coding downstream 501346 28494535 ~ 28494738 (+)
G1850690 NA non-coding downstream 578418 28571607 ~ 28571947 (+)
G1849208 LOC106607606 other upstream 713986 27274338 ~ 27276259 (+)
G1845108 NA other upstream 3635999 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 4643756 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 7205042 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 7473359 20358591 ~ 20516930 (+)
G1851386 NA other downstream 1050172 29043361 ~ 29075998 (+)
G1852590 NA other downstream 2025301 30018490 ~ 30025046 (+)
LOC110502560 LOC106607954 other downstream 2553935 30547124 ~ 30659333 (+)

Expression


Co-expression Network