LOC110502531 (LOC106607719)


Basic Information

Item Value
gene id LOC110502531
gene name LOC106607719
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 28098447 ~ 28140673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580608.2
TTCAGCCCCACCACCCTGGAGAGAGATGCTGCGAGGGAGCGAAGGGGCTGGGAACCggtcactctatctctctctttcttgatcGAATGTGAAGGAAGCAAGTCCTGCGGCAAAACGAGCGAAATTCCACCGATACCAGGAGAGGCATCCCGGCTCTGTTGTAGAAATGGAGATTCCAAGATTGGGACACAACTTAACCAGCCCGATGAGTCCGTGTGAGGGTATGATAAAGAACCTCAGCTTGGACGGTATACAATTATGCGAGCGAGAGGGTAATAAATCCCAGGACAGCGGCATCGTAGAGATGGAGGAGCTTCCTGTCCCTCAGAACATCAAGATCAGCAACATCACATGTGACTCTTTCAAGATTTGCTGGGACATGGAGCCCCGTGTCAAGGAGCGCATCACTCACTACTTCATTGACCTCAATAAGAAGGAGAACAAGAACTCCAACAAGTTCAAACACAAGGATGTCCCCACTAAGCTGGTGGCGAAGGCGGTTCCTCTGCCCATGACGGTGAGGGGTCACTGGTTCCTCAGCCCGCGTACAGAGTACACTGTGGCCGTCCAGACAGCTTCCAAACAGACCGACGGAGACTACGCTGTGTCAGAGTGGAGCGAGATCATAGAGTTCACCACCGCCGATTATTCCACGGTGCATCTAACCCAACTGCTGGAGAAGGCTGAGGTCATCGCAGGGAGGATGCTGCGCTTCTCTGTGTTCTACAGGAACCAGAACAAAGAGTACTTTGACCAGGCCAGGGAGGTGCATGGGAACCGCATGCTGCCAGCAGTGAAGGACAATAGTGGAAGCCACGGCTCACCTATCAGCGGAAAGCTGGAGGGCCTCTACTTCAGCTGCAACACAGAGTTCAACACAGGCAAGCCCCCCCAGGATTCCCCCTACGGCCGCACACGCTTTGAGATCCAGGCTGAGACCCTGTTCAACCCCAAGACTAACCTCTACTTCGGGGACTTCTACTGCATGTATACAGCCTACCACTACGTCATACTGGTGCTGGCCCCACAGGGCTCGCCCGGCGATGACTTCTGCAAGGCAAGGCTGCAAGCGCTCGACGTCACCAACAACCACTTCCTGACGTGCACGCTGGACGAGGAGGCGGGCGACGGGGCTCTGGTGTTCCGGCACGCCCAGGATGTGATCCTGGAGGTGATTTACACGGATCCCGTGGACCTGGCGCTGGGCACGGTGGCAGAGATCAGCGGGCACCAGCTTATGAGCCTTTCTACTGTCAACGCCAAGAAGGACCCCAGCTGCAAGACCTGCAACATCAGCGTGGGACGCTAGTGGGAGACTGGACTGGACCTGtgctacacacacatgcaacccCAACCTTTACACACCTCTATATCCACAAAGAACCACCCTCCCAAAAGAAGAACAGTGCAAAAGAGGGACCCAGACTGTGAAAAAAATGTAACAGGGTGCGGTGCTAGAATTCACAATCCaattgcatacacacacaaacatacacataaaCAAAACACATCACCCATAACCCTTTACATCCTCAAAGGACCACCCTCCCAAAAGTGTGGAACTCTATTCCAGCCTCCCGCCAACCCCATCAGAAGAGAAACAATGCAAAAGAGGGAGGAGCCCCAACTGAAAGATCTACAGCTTAAGTGTGGGACCCCAACAACTTTGTCAGCATCATCCAAACCGGCTAGCCAACACTGGTCAATTAACTGACTGATCCCTTTAAATGTTCTAACCAAACATTCATTGTTGCCTGCATTTATTCACACAGCTTTTCTCATAGATTTTCCCTCCTGTTGTTTTTCAAAACATCTCCATCTCCCTTTGACCTTTTCTGTTCACTTCAGTCCAGGTAGACAGGTGGTTGTGttcctctttttctgtctcttctGGAAGGTGTTAGTTTGGTCCAAGTTACTCCATAACTCCCTCTATTGGCAGAGACTGGTACTAATTTAGGGCTGCAGTGTCATCATCTTTATGCCAAAGGTATCCCAAATGGAAATAACATGCTGTAGAATAACAATACTAATGCAACAGCCACTAAAAAGCAAATTAACTCTGAGATCAACATGGTAATTACTACTTGGTAACCTTTAAGAGCATGATGCTGTCAACTGCAATGTTTTATTTATTCTAGTTATAAGGAAACCATAGACTGTGTTTAGCAAAGTAAGTgtgaaaatatttattttttactgatATACATAGAAACCAGAAGTGCACAATGTCAAGAGATCTGATCATAGTAAAGAATGGCATTTTGGGATGAAAAACACATTTGACTGCAGGAGTAACTTGCCCTATGCCAACattcacacttttttttttccAAGGTAATGTATAACTTGAATTGCCACAATGCATCATGTCAACTATTAACTAATACATATCATAGTACAAAGTGGGACTAAAAACTGATTGACATACACAAATATTCTACAGGATTGTCAGATTGTATATTTGGATGACATATCCTCCTTGCCAAGATTGCACTTTTCAAAGTGCCACATTTGAACATAGTACACCACCTGTTATACCGAGAATAGTTTTGCGAGAAGAAAATGCAAGTAACAATAGTGTCATAAAATAGCTTAGAAATTGACAACATGTATCTAACATCAACTGTTATATTTGTTCTCTTTGTTTCCTTAAAACTGTTACACTCGCTACATCAGTTGCATAAAATATTATAATTCCATCAGTTGCATAAAATATCATTTGTTATCATAAATAACAAAGGACTTGTTATGGGACAAAAAATTGTTGGATGTCGCCCAGCAACTCTTGTATCATCTTGCCATCACTCTTAACCAAAGTGAGAGTCAGTCAACATCAAAGTAATTTAAAGTGCATCACCATGTAACCATGGCATGAAACATGACAAGAAGTACCGGTATTTCACTTTGAAAATTGTTCAGAAACTAAAGGTCCTATAAATGAGTAAAAAAgtgtttcaaaataaaagtcccactGTGAAGGAAGCTTAGACAGTCTTCTAAGTATCCTGTTTACTGAGCAGGGCTTCCAGTAAGTGGAGTTTTGCTTTTAGGTTCTTGTACTCGCAGTACTCCTCTGCCATGGGCCCGCGGTCCTCTTTCTGGGCATTCCTTTAAAGACGAGGAAGAGAAACATATTACTTAATATTTTAGACAAGCTGCAGCTTCCTTTACTGGTATAGTCCTTGTGTTGCCTTATTCAGATAACATTGTACAGTGAGTATTGTAATTAAAGCATTGTattttagggctctattcaatctgcgTCACGGAAATTCAGCTTTACAGCGTGAttgacatttaaaggcaatgttcccacttAGGTGGAGAAtgcattcatggtaaacgctgcttatgtcggctcaatcggaaattaacTTTACATTTCTATTGGGGAATCCGTAATGCTTCAGtgttacagattgaatagagccctactTAAAAAAAACAGCTACATGTACAAAAGATGTGTATACTGTAGTTCAGAGCAGTTgactatttctctgtctctctcctaagtACTTCTTTGTGTCGTATTAACGTGAGTGTGCATCACGCTGTTGTATCATTCTGCTGAATTCTTTTGGtggatgttttattttatttttcacaagGCATTGTTGAACTATGGATACCAAATGTTCCAGTTTGTTAAAAGAAAATGAAAGAAAATGCAAACA
>XM_036960081.1
GTTAACTGGATGCTTCTTGGCAACCCTGCTGATTTTTACTTGTGGATGGCGACTTCAGCTTTTCGGAAAAAGATTGAAAAGTATCTTGACACTGTGTTGATCAGAGTCAGCGCAAATTTGGATTATAATGACAAGAAAATGTAATTGACAGAATGGAGTGTACTGAATTAATGCATAAGGTAATAAATCCCAGGACAGCGGCATCGTAGAGATGGAGGAGCTTCCTGTCCCTCAGAACATCAAGATCAGCAACATCACATGTGACTCTTTCAAGATTTGCTGGGACATGGAGCCCCGTGTCAAGGAGCGCATCACTCACTACTTCATTGACCTCAATAAGAAGGAGAACAAGAACTCCAACAAGTTCAAACACAAGGATGTCCCCACTAAGCTGGTGGCGAAGGCGGTTCCTCTGCCCATGACGGTGAGGGGTCACTGGTTCCTCAGCCCGCGTACAGAGTACACTGTGGCCGTCCAGACAGCTTCCAAACAGACCGACGGAGACTACGCTGTGTCAGAGTGGAGCGAGATCATAGAGTTCACCACCGCCGATTATTCCACGGTGCATCTAACCCAACTGCTGGAGAAGGCTGAGGTCATCGCAGGGAGGATGCTGCGCTTCTCTGTGTTCTACAGGAACCAGAACAAAGAGTACTTTGACCAGGCCAGGGAGGTGCATGGGAACCGCATGCTGCCAGCAGTGAAGGACAATAGTGGAAGCCACGGCTCACCTATCAGCGGAAAGCTGGAGGGCCTCTACTTCAGCTGCAACACAGAGTTCAACACAGGCAAGCCCCCCCAGGATTCCCCCTACGGCCGCACACGCTTTGAGATCCAGGCTGAGACCCTGTTCAACCCCAAGACTAACCTCTACTTCGGGGACTTCTACTGCATGTATACAGCCTACCACTACGTCATACTGGTGCTGGCCCCACAGGGCTCGCCCGGCGATGACTTCTGCAAGGCAAGGCTGCAAGCGCTCGACGTCACCAACAACCACTTCCTGACGTGCACGCTGGACGAGGAGGCGGGCGACGGGGCTCTGGTGTTCCGGCACGCCCAGGATGTGATCCTGGAGGTGATTTACACGGATCCCGTGGACCTGGCGCTGGGCACGGTGGCAGAGATCAGCGGGCACCAGCTTATGAGCCTTTCTACTGTCAACGCCAAGAAGGACCCCAGCTGCAAGACCTGCAACATCAGCGTGGGACGCTAGTGGGAGACTGGACTGGACCTGtgctacacacacatgcaacccCAACCTTTACACACCTCTATATCCACAAAGAACCACCCTCCCAAAAGAAGAACAGTGCAAAAGAGGGACCCAGACTGTGAAAAAAATGTAACAGGGTGCGGTGCTAGAATTCACAATCCaattgcatacacacacaaacatacacataaaCAAAACACATCACCCATAACCCTTTACATCCTCAAAGGACCACCCTCCCAAAAGTGTGGAACTCTATTCCAGCCTCCCGCCAACCCCATCAGAAGAGAAACAATGCAAAAGAGGGAGGAGCCCCAACTGAAAGATCTACAGCTTAAGTGTGGGACCCCAACAACTTTGTCAGCATCATCCAAACCGGCTAGCCAACACTGGTCAATTAACTGACTGATCCCTTTAAATGTTCTAACCAAACATTCATTGTTGCCTGCATTTATTCACACAGCTTTTCTCATAGATTTTCCCTCCTGTTGTTTTTCAAAACATCTCCATCTCCCTTTGACCTTTTCTGTTCACTTCAGTCCAGGTAGACAGGTGGTTGTGttcctctttttctgtctcttctGGAAGGTGTTAGTTTGGTCCAAGTTACTCCATAACTCCCTCTATTGGCAGAGACTGGTACTAATTTAGGGCTGCAGTGTCATCATCTTTATGCCAAAGGTATCCCAAATGGAAATAACATGCTGTAGAATAACAATACTAATGCAACAGCCACTAAAAAGCAAATTAACTCTGAGATCAACATGGTAATTACTACTTGGTAACCTTTAAGAGCATGATGCTGTCAACTGCAATGTTTTATTTATTCTAGTTATAAGGAAACCATAGACTGTGTTTAGCAAAGTAAGTgtgaaaatatttattttttactgatATACATAGAAACCAGAAGTGCACAATGTCAAGAGATCTGATCATAGTAAAGAATGGCATTTTGGGATGAAAAACACATTTGACTGCAGGAGTAACTTGCCCTATGCCAACattcacacttttttttttccAAGGTAATGTATAACTTGAATTGCCACAATGCATCATGTCAACTATTAACTAATACATATCATAGTACAAAGTGGGACTAAAAACTGATTGACATACACAAATATTCTACAGGATTGTCAGATTGTATATTTGGATGACATATCCTCCTTGCCAAGATTGCACTTTTCAAAGTGCCACATTTGAACATAGTACACCACCTGTTATACCGAGAATAGTTTTGCGAGAAGAAAATGCAAGTAACAATAGTGTCATAAAATAGCTTAGAAATTGACAACATGTATCTAACATCAACTGTTATATTTGTTCTCTTTGTTTCCTTAAAACTGTTACACTCGCTACATCAGTTGCATAAAATATTATAATTCCATCAGTTGCATAAAATATCATTTGTTATCATAAATAACAAAGGACTTGTTATGGGACAAAAAATTGTTGGATGTCGCCCAGCAACTCTTGTATCATCTTGCCATCACTCTTAACCAAAGTGAGAGTCAGTCAACATCAAAGTAATTTAAAGTGCATCACCATGTAACCATGGCATGAAACATGACAAGAAGTACCGGTATTTCACTTTGAAAATTGTTCAGAAACTAAAGGTCCTATAAATGAGTAAAAAAgtgtttcaaaataaaagtcccactGTGAAGGAAGCTTAGACAGTCTTCTAAGTATCCTGTTTACTGAGCAGGGCTTCCAGTAAGTGGAGTTTTGCTTTTAGGTTCTTGTACTCGCAGTACTCCTCTGCCATGGGCCCGCGGTCCTCTTTCTGGGCATTCCTTTAAAGACGAGGAAGAGAAACATATTACTTAATATTTTAGACAAGCTGCAGCTTCCTTTACTGGTATAGTCCTTGTGTTGCCTTATTCAGATAACATTGTACAGTGAGTATTGTAATTAAAGCATTGTattttagggctctattcaatctgcgTCACGGAAATTCAGCTTTACAGCGTGAttgacatttaaaggcaatgttcccacttAGGTGGAGAAtgcattcatggtaaacgctgcttatgtcggctcaatcggaaattaacTTTACATTTCTATTGGGGAATCCGTAATGCTTCAGtgttacagattgaatagagccctactTAAAAAAAACAGCTACATGTACAAAAGATGTGTATACTGTAGTTCAGAGCAGTTgactatttctctgtctctctcctaagtACTTCTTTGTGTCGTATTAACGTGAGTGTGCATCACGCTGTTGTATCATTCTGCTGAATTCTTTTGGtggatgttttattttatttttcacaagGCATTGTTGAACTATGGATACCAAATGTTCCAGTTTGTTAAAAGAAAATGAAAGAAAATGCAAACA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580608.2 False 3680 mRNA 0.44 5 28098447 28140673
XM_036960081.1 True 3587 mRNA 0.43 5 28119350 28140673

Neighbor

gene id symbol gene type direction distance location
LOC110502528 bic1a coding upstream 20193 28001291 ~ 28078254 (+)
LOC110502527 LOC106607701 coding upstream 105258 27990245 ~ 27993189 (+)
LOC110503097 LOC106577081 coding upstream 258108 27790759 ~ 27848517 (+)
LOC110502523 LOC106607673 coding upstream 329387 27765818 ~ 27769060 (+)
LOC110502522 NA coding upstream 581906 27508395 ~ 27516541 (+)
LOC110502539 LOC106607826 coding downstream 321782 28462455 ~ 28466290 (+)
LOC110502541 LOC106607837 coding downstream 356903 28497576 ~ 28571528 (+)
LOC110502542 LOC106607841 coding downstream 457240 28597913 ~ 28603119 (+)
LOC110502543 LOC106607859 coding downstream 477834 28618507 ~ 28621114 (+)
LOC110502544 LOC106607864 coding downstream 493373 28634046 ~ 28652668 (+)
G1849835 NA non-coding upstream 191305 27895129 ~ 27907142 (+)
G1849821 NA non-coding upstream 222265 27874444 ~ 27876182 (+)
G1849658 NA non-coding upstream 326239 27771919 ~ 27772208 (+)
G1849660 NA non-coding upstream 327941 27770035 ~ 27770506 (+)
G1850012 NA non-coding downstream 87888 28228561 ~ 28230666 (+)
G1850667 NA non-coding downstream 320574 28461247 ~ 28461479 (+)
G1850669 NA non-coding downstream 326621 28467294 ~ 28467615 (+)
G1850688 NA non-coding downstream 353862 28494535 ~ 28494738 (+)
G1850690 NA non-coding downstream 430934 28571607 ~ 28571947 (+)
G1849208 LOC106607606 other upstream 822188 27274338 ~ 27276259 (+)
G1845108 NA other upstream 3744201 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 4751958 23345044 ~ 23346489 (+)
G1851386 NA other downstream 902688 29043361 ~ 29075998 (+)
G1852590 NA other downstream 1877817 30018490 ~ 30025046 (+)
LOC110502560 LOC106607954 other downstream 2406451 30547124 ~ 30659333 (+)
G1853092 NA other downstream 2664877 30805550 ~ 30806454 (+)

Expression


Co-expression Network