LOC110502534 (LOC100380754)


Basic Information

Item Value
gene id LOC110502534
gene name LOC100380754
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 28203944 ~ 28227097 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580616.2
ccacaaagtcaaacatGGAAACAGCAtcttgctttttggtcttaatttgaGGTTAGGTTAAGGCATAAggctagcagtgtggttagggttaagtttacgTTTAAAATACGACTTTAAGAATatacattgtagaaataggcgggcTTTAGCCATAATGATGACTTTGTGACTGTGGCAATTAGTGAAGACCCTGCTGCTGCCCCACAAACACTGCAGCTGCAGTCTCGTCTCCTCCACCGTACTGTCTGTCGCACACATAGCCATGGCGGACAGTGCAAGCGAGAGCGACACGGACGGAGCAGGGAGTAGCTCGGCTACACCGATGTCATCATCCGCCTCAAATTTGACCAAGCCGGGGGTAGTCATTTCACAGTTTCGATTAGAGGAGTTAACTAACCGATTAGCCTCACTACAACAGGAGAACAAAGTTCTTAAAATTGAGCTGGAGACGTTCAAACTCAAGTGTAAGGCACTACAGGGGGAGAATCGGGACCTGCGTAAAGCTAGCGTCACCATTCAAGCCAGGGCTGAGCAAGAGGAGGAATTCATCAGCAACACTCTGTTCAAGAAGATCCAGGCCCTGCAGAAAGAGAAGGAGACCCTCGCCGTTAACtatgagaaagaggaggaatttCTCACGAATGAACTGTCAAGAAAACTCATGCAATTACAACATGAGAAGGCTGAGTTGGAACAGCACTTGGAACAGGAGCAGGAGTTCCAGGTCAACAAACTGATGAAGAAGATCAAGAAAATGGAGAACGACACAATATCAAAGCAGCTCACCTTGGAGCAGCTAAGGCGCGAGAAGATTGACCTCGAAAACACATTAGAGCAAGAACAAGAAGCTCTTGTCAATAGACTGTGGAAGCGCATGGACAAATTGGAGGCAGAGAAAAGAATCCTCCAGGAGAAGTTGGACCAGCCTGTGtctgctcctccctctcccagggATGTTTCCATGGAGATCGACTCTCCGGAGAACATGATGCGGCATATCCGCTTCCTGAAGGATGAGGTGGAGAGACTGAAGAAGAGCCTCCGTACCACCGAGCTGCAGCACACAGAGAAGCGGGCCCAGTACATTGAGGAGGAGCGGCACATGCGTGAGGAGAACATCCGTCTGCAGAGGAAgctgcagagagagatggagcgccGCGAGGCCCTGTGTAGACAGCTGTCTGAGAGCGAGTCCAGTCTGGAGATGGATGACGAGAGGTACTTCAATGAGATGTCAGCTCAAGGCTTGCGAGCACGGACGGTATCCAGTCCCATCCCATACACTCCTTCCCCCAGCTCCAGCCGACCCATATCACCTGGTCTGTCATACGGTAGTCACACAGTTGGGTTCACTCCCCCGGCCactctgtccagagccgccatcTCCCACTTCAACGCCCCAGCCCTGCACATCCACGGAGGATCCTCCCACGGCGTAGCGAGGCCCTCCCCGAGAAGAAGCACCAGCCCAGATAAATTCAAACGTCCCACACCGCCGCCCTCACCCAACACGCACTCAGGGGCGCAGCCTCTGCACCCGCTCCCCCCGCCAGCCCAGCCAATGGTCCAGTCCATGTCCTCTCCTGCAGCTATGTCGCAGCATGCAGCGCATCCCCCCTCCCAGCCTTAACGTGCTATGCCATGCTACACTACTTCGACAACCAGGGAGTTGAAACCCCACAGAGCAAGTTTCTATGAGCCGGCAGAAGACCTGAAGCAACATGGGGCGTTCTAAGGAATTTACTGACTTTAACTGCGCTTCTGGGATTTGTAGGCTGATATCTGTTCACCTTGTCTTGTACATGTTTGTTTTTTGCTTGGAACTGTTGACGATTGGAATTATTGTGGCGCTAACAACCAACACGTATGGTAACAATGTCTTGTCATGGTGTTTGTGGGCTGGATGTGTTGGATCCCTTCCATGTCTGCAATACCACATTCCAACAGCAGTAATGTGCACACCCCACCCCCTTGTTCAAAAACAACTTAATCAATTGCATCCCAGTAAGAATTGCTTAAGTCAGTAAGATGTATTGTAAAAGAAATCTCAGCTTTAGGAGTAACCCAGATATAGGGCATTGATGATGGGAGGGAGCTAGCGCAAAGATATGTTGACTTTTTGATTCTGAAAGCCACTGCTTGCCACACTGCTcgtaaaaaacacacaaaaaaacaaaaggaTGGACAGTGGTACATAAACCACAGATAAATGTTGGCTTTTGAGGTATTCAAATGTAGTCTGAGGTGTTCCAATATATATAGTCATGTACTCttgcgtctctttctctctcttccacagcTCTATCTCTGGTGTGGTTATAAAAGATTTTGTCATCCCTATGGATATTCCTCATCAGACAAAAATGTAATGCTCTTTACACTAAATATACTGATATAACATTCTAAATGAATGGTACTGTTGAATGACATTTCTATGTATGATTAAAAGATCTTGAGAAGATGACTCTAATTTTAGTGTGTTGTACTTTGTTTTTACAATATGTGGCAACTCTGACTGTTGGTAATGTTTTCAGTTCTACTGGAGGTTGTCATGTGTGAACCAGTGAAAGACTGACAGTGTTTATCCTTCATTCTgctctctttttttatttgaataCCAGCATTGAATACACACATAACCGTGGCTTATCTGAAGCATGCACTGTTCTGTAAAATCATGTGTTCCAGTCACACTTGTTTTTGGCATAAGCCTGAGCTGAACTTCACACAAGTTACGCAAGATGAACTTTTGGCACTAATAAAGTAATTGACTGGAAATTATATGTTCA
>XM_036960082.1
ccacaaagtcaaacatGGAAACAGCAtcttgctttttggtcttaatttgaGGTTAGGTTAAGGCATAAggctagcagtgtggttagggttaagtttacgTTTAAAATACGACTTTAAGAATatacattgtagaaataggcgggcTTTAGCCATAATGATGACTTTGTGACTGTGGCAATTAGTGAAGACCCTGCTGCTGCCCCACAAACACTGCAGCTGCAGTCTCGTCTCCTCCACCGTACTGTCTGTCGCACACATAGCCATGGCGGACAGTGCAAGCGAGAGCGACACGGACGGAGCAGGGAGTAGCTCGGCTACACCGATGTCATCATCCGCCTCAAATTTGACCAAGCCGGGGGTAGTCATTTCACAGTTTCGATTAGAGGAGTTAACTAACCGATTAGCCTCACTACAACAGGAGAACAAAGTTCTTAAAATTGAGCTGGAGACGTTCAAACTCAAGTGTAAGGCACTACAGGGGGAGAATCGGGACCTGCGTAAAGCTAGCGTCACCATTCAAGCCAGGGCTGAGCAAGAGGAGGAATTCATCAGCAACACTCTGTTCAAGAAGATCCAGGCCCTGCAGAAAGAGAAGGAGACCCTCGCCGTTAACtatgagaaagaggaggaatttCTCACGAATGAACTGTCAAGAAAACTCATGCAATTACAACATGAGAAGGCTGAGTTGGAACAGCACTTGGAACAGGAGCAGGAGTTCCAGGTCAACAAACTGATGAAGAAGATCAAGAAAATGGAGAACGACACAATATCAAAGCAGCTCACCTTGGAGCAGCTAAGGCGCGAGAAGATTGACCTCGAAAACACATTAGAGCAAGAACAAGAAGCTCTTGTCAATAGACTGTGGAAGCGCATGGACAAATTGGAGGCAGAGAAAAGAATCCTCCAGGAGAAGTTGGACCAGCCTGTGtctgctcctccctctcccagggATGTTTCCATGGAGATCGACTCTCCGGAGAACATGATGCGGCATATCCGCTTCCTGAAGGATGAGGTGGAGAGACTGAAGAAGAGCCTCCGTACCACCGAGCTGCAGCACACAGAGAAGCGGGCCCAGTACATTGAGGAGGAGCGGCACATGCGTGAGGAGAACATCCGTCTGCAGAGGAAgctgcagagagagatggagcgccGCGAGGCCCTGTGTAGACAGCTGTCTGAGAGCGAGTCCAGTCTGGAGATGGATGACGAGAGGTACTTCAATGAGATGTCAGCTCAAGGCTTGCGAGCACGGACGGTATCCAGTCCCATCCCATACACTCCTTCCCCCAGCTCCAGCCGACCCATATCACCTGGTCTGTCATACGGTAGTCACACAGTTGGGTTCACTCCCCCGGCCactctgtccagagccgccatcTCCCACTTCAACGCCCCAGCCCTGCACATCCACGGAGGATCCTCCCACGGCGTAGCGATATCATGGGAGTGTTGTCGTGTACATTGATCCTTGCTGAGATGTAGCAATAGTGAAGAATGGATCTCCTACCAATACCATGGAGAAGGGCTGGTGTAAGTGGGCCATTAATCTTTATGGTGTGTATCTAATGAGTGTCTAATCTGGGTCACATCTTAATTTGTTTGGTACAGTATAAAGCTCCTGTGTCCGTCATCTTACATGACTAGCCTTGATGGTATTCCACGTATGGTAGTTTtacttgtgtgtgttgttgtttccCCCCTCCCATGTTTTCTGAGGAATAAATAAATTGTTGGgcataagactgtaaaaacactgggaaatcagctccaagttatATTCCCACGCATAAGAGAGTCACGTGATCATATAGCAAGGTTTGAAAtaattgttttagtcaaatattataatattatatctgtttgggattatttgtaattatgttctggacCCCCAAACATGCGCTCAAGAAAAAAAAATGGTCCCCTGCTGAATGTAGTTGGTGATCCCTGGACTATATGAATGTTCTATCAAATGAGGTCTTTTCAATAAACGGGCCAGGAGTCAGTCTGAGCCAGCAGATTT

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 6

GO: NA

KEGG:

id description
K09288 CCDC6, PTC; coiled-coil domain-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580616.2 False 2789 mRNA 0.47 9 28203944 28227097
XM_036960082.1 True 2029 mRNA 0.48 9 28209128 28227097

Neighbor

gene id symbol gene type direction distance location
LOC110502533 mot9 coding downstream 6361 28181086 ~ 28197583 (-)
fam13c LOC106607716 coding downstream 55047 28139168 ~ 28148897 (-)
LOC110502532 NA coding downstream 87953 28115595 ~ 28120442 (-)
LOC110502525 LOC106607696 coding downstream 220519 27860092 ~ 27983425 (-)
LOC110502526 LOC106607693 coding downstream 344638 27850104 ~ 27859306 (-)
LOC110502535 NA coding upstream 1441 28228538 ~ 28413165 (-)
LOC118943855 NA coding upstream 164543 28391640 ~ 28392295 (-)
LOC110503098 NA coding upstream 245208 28472305 ~ 28480296 (-)
LOC110503099 LOC106607870 coding upstream 396276 28623373 ~ 28629070 (-)
LOC110502547 LOC106607910 coding upstream 456342 28683439 ~ 28686654 (-)
G1850494 NA non-coding downstream 54043 28149615 ~ 28149901 (-)
G1850489 NA non-coding downstream 66843 28136564 ~ 28137101 (-)
G1850380 LOC106607701 non-coding downstream 210975 27990184 ~ 27992969 (-)
G1850249 NA non-coding downstream 429542 27774132 ~ 27774402 (-)
G1850718 LOC106607826 non-coding upstream 237491 28464588 ~ 28466261 (-)
G1850764 NA non-coding upstream 360373 28587470 ~ 28587763 (-)
G1850766 NA non-coding upstream 362341 28589438 ~ 28589658 (-)
G1850778 NA non-coding upstream 366201 28593298 ~ 28593712 (-)
G1850944 NA non-coding upstream 424647 28651744 ~ 28652420 (-)
G1850441 NA other downstream 125693 28074925 ~ 28078251 (-)
G1846858 NA other downstream 2763557 25439807 ~ 25440387 (-)
LOC110502462 LOC106607169 other downstream 4858173 23344353 ~ 23358461 (-)
G1843946 NA other downstream 4970521 23182987 ~ 23233423 (-)
LOC110502553 NA other upstream 697642 28919846 ~ 28932600 (-)
LOC110502574 LOC106608078 other upstream 2924512 31151609 ~ 31239202 (-)
G1854905 NA other upstream 2990500 31217597 ~ 31218171 (-)
G1855326 NA other upstream 3752900 31979997 ~ 31981333 (-)
G1855821 NA other upstream 4287969 32515066 ~ 32515408 (-)

Expression


Co-expression Network