LOC110502539 (LOC106607826)



Basic Information


Item Value
gene id LOC110502539
gene name LOC106607826
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 28462455 ~ 28466290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021580658.2
GTGATTGCTTGGTTTTGAAAGCTAGCAGCCCCGCGGCCAATTCGAAAAGAGTGTACCCAGCAGTAGTACTCTAGCTAGCTGACTAATAGAGCCACACTCATTTTCCATTCAACAGTCGCGTTACATAACGACATGGCACAACCGggAACAATGAATGATTACGTGAAAATAGAGAAAATCGGAGAGGGTACCTATGGGGTTGTGTACAAAGGCAGACACAAGTCGACAGGCCAGGTAGTGGCCATGAAGAAGATCCGACtggagagtgaggaggagggagtgcCAAGCACAGCTGTCAGAGAGATCTCTCTGCTCAAAGAGCTAGCGCACCCTAATGTTGTACGCCTTCTAGATGTGCTGATGCAGGAGTCCAGACTGTACCTCATCTTTGAGTTCCTTTCCATGGACCTGAAGAAATACCTAGACTCTATCCCCTCGGGCCAGTACATGGACCCCATGCTTGTGAAGAGCTATCTGTACCAGATCTTAGAGGGCATCCTGTTCTGCCACTGTAGAAGGGTCCTCCACAGAGACCTGAAGCCCCAGAACCTGCTGATTGACAACAAGGGAGTGATCAAACTGGCAGACTTTGGGTTGGCCAGGGCCTTCGGGGTGCCAGTCCGGGTATATACCCACGAGGTTGTGACACTGTGGTACAGGGCTCCTGAGGTTCTGCTAGGTGCCGCACGGTACTCCACCCCTGTGGATGTCTGGAGTATCGGGACCATCTTTGCGGAGTTGGCCACAAAGAAACCACTTTTCCATGGAGACTCAGAGATTGACCAGCTCTTCAGGATCTTcagGGCCCTTGGTACTCCCAACAATGACATCTGGCCAGAGGTAGAATCTCTGCCTGACTACAAGAACACGTTCCCCAAGTGGAAATCAGGGAATCTGTCCTCCATGGTGAAAAACCTAGATAAGGATGGCATTGATCTGCTCGCTAAAACGCTGATCTATGACCCACCCAAGAGGATCTCTGCTAGACAGGCTATGAGCCATCCATACTTTGACGACCTGGACAAAACCACTCTACCTGCCAGCACGGTCACGATGTAAATGTCACATGGCTCTACTCAAAGGGCCTGAAAAAGAGTGCAATTATGGATGTCTATTGAATTTGttaattagatttttttgtaTCTTTGTTCTTTCTTTGTTTGTCCTTTTTCTATCTAATATGAATAACTATTCTGTAAATAACttttatgtaaaaaaacaaaaagttTGGATCTAAAGTGACAGTATTTTCAATAAATTGCACTTTTGCAGAACTGATACTtctaaa
>XM_021580659.2
TGTACCCAGCAGTAGTACTCTAGCTAGCTGACTAATAGAGCCACACTCATTTTCCATTCAACAGTCGCGTTACATAACGACATGGCACAACCGGTATAAAAGTTTTACATTTTTAGCAACATGTATTTGTTTGATCGATTGTATTGTAGCAGTTGTCATGAAATTGAAAATGTAACTAGCTAGCATTGAGGGAAACattcgctagctagctatcacATGCACAGCTTTTGAAaacgaggatattggaaattatCACTAACAAGGCGTCACATTAAATATCACAAAGTAATGTTATATTGTTTTGTTATCGAGTAATGATACTAATATAATGTTCATTGTTGACTGGCTACCGAAGTTAGggAACAATGAATGATTACGTGAAAATAGAGAAAATCGGAGAGGGTACCTATGGGGTTGTGTACAAAGGCAGACACAAGTCGACAGGCCAGGTAGTGGCCATGAAGAAGATCCGACtggagagtgaggaggagggagtgcCAAGCACAGCTGTCAGAGAGATCTCTCTGCTCAAAGAGCTAGCGCACCCTAATGTTGTACGCCTTCTAGATGTGCTGATGCAGGAGTCCAGACTGTACCTCATCTTTGAGTTCCTTTCCATGGACCTGAAGAAATACCTAGACTCTATCCCCTCGGGCCAGTACATGGACCCCATGCTTGTGAAGAGCTATCTGTACCAGATCTTAGAGGGCATCCTGTTCTGCCACTGTAGAAGGGTCCTCCACAGAGACCTGAAGCCCCAGAACCTGCTGATTGACAACAAGGGAGTGATCAAACTGGCAGACTTTGGGTTGGCCAGGGCCTTCGGGGTGCCAGTCCGGGTATATACCCACGAGGTTGTGACACTGTGGTACAGGGCTCCTGAGGTTCTGCTAGGTGCCGCACGGTACTCCACCCCTGTGGATGTCTGGAGTATCGGGACCATCTTTGCGGAGTTGGCCACAAAGAAACCACTTTTCCATGGAGACTCAGAGATTGACCAGCTCTTCAGGATCTTcagGGCCCTTGGTACTCCCAACAATGACATCTGGCCAGAGGTAGAATCTCTGCCTGACTACAAGAACACGTTCCCCAAGTGGAAATCAGGGAATCTGTCCTCCATGGTGAAAAACCTAGATAAGGATGGCATTGATCTGCTCGCTAAAACGCTGATCTATGACCCACCCAAGAGGATCTCTGCTAGACAGGCTATGAGCCATCCATACTTTGACGACCTGGACAAAACCACTCTACCTGCCAGCACGGTCACGATGTAAATGTCACATGGCTCTACTCAAAGGGCCTGAAAAAGAGTGCAATTATGGATGTCTATTGAATTTGttaattagatttttttgtaTCTTTGTTCTTTCTTTGTTTGTCCTTTTTCTATCTAATATGAATAACTATTCTGTAAATAACttttatgtaaaaaaacaaaaagttTGGATCTAAAGTGACAGTATTTTCAATAAATTGCACTTTTGCAGAACTGATACTtctaaa

Function


NR:

description
cyclin-dependent kinase 1-like isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity molecular_function

KEGG:

id description
K02087 CDK1, CDC2; cyclin-dependent kinase 1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021580658.2 False 1288 mRNA 0.47 8 28462455 28466290
XM_021580659.2 True 1503 mRNA 0.44 8 28462506 28466290

Neighbor


gene id symbol gene type direction distance location
LOC110502531 LOC106607719 coding upstream 321782 28098447 ~ 28140673 (+)
LOC110502528 bic1a coding upstream 384201 28001291 ~ 28078254 (+)
LOC110502527 LOC106607701 coding upstream 469266 27990245 ~ 27993189 (+)
LOC110503097 LOC106577081 coding upstream 622116 27790759 ~ 27848517 (+)
LOC110502523 LOC106607673 coding upstream 693395 27765818 ~ 27769060 (+)
LOC110502541 LOC106607837 coding downstream 31286 28497576 ~ 28571528 (+)
LOC110502542 LOC106607841 coding downstream 131623 28597913 ~ 28603119 (+)
LOC110502543 LOC106607859 coding downstream 152217 28618507 ~ 28621114 (+)
LOC110502544 LOC106607864 coding downstream 167756 28634046 ~ 28652668 (+)
slc22a15 slc22a15 coding downstream 196384 28662674 ~ 28671512 (+)
G1850667 NA non-coding upstream 976 28461247 ~ 28461479 (+)
G1850012 NA non-coding upstream 231789 28228561 ~ 28230666 (+)
G1849835 NA non-coding upstream 555313 27895129 ~ 27907142 (+)
G1849821 NA non-coding upstream 586273 27874444 ~ 27876182 (+)
G1850669 NA non-coding downstream 1004 28467294 ~ 28467615 (+)
G1850688 NA non-coding downstream 28245 28494535 ~ 28494738 (+)
G1850690 NA non-coding downstream 105317 28571607 ~ 28571947 (+)
G1850763 NA non-coding downstream 121437 28587727 ~ 28587965 (+)
G1850772 NA non-coding downstream 125189 28591479 ~ 28592148 (+)
G1849208 LOC106607606 other upstream 1186196 27274338 ~ 27276259 (+)
G1845108 NA other upstream 4108209 24326264 ~ 24354246 (+)
G1844044 LOC106607169 other upstream 5115966 23345044 ~ 23346489 (+)
G1851386 NA other downstream 577071 29043361 ~ 29075998 (+)
G1852590 NA other downstream 1552200 30018490 ~ 30025046 (+)
LOC110502560 LOC106607954 other downstream 2080834 30547124 ~ 30659333 (+)
G1853092 NA other downstream 2339260 30805550 ~ 30806454 (+)

Expression



Co-expression Network