LOC110502542 (LOC106607841)


Basic Information

Item Value
gene id LOC110502542
gene name LOC106607841
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 28597913 ~ 28603119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580661.2
CGGTAGACTCCTCCTCACCACTGTCTGAGATGCACATTATGGAGTTCAATGAAAAAAATACGATTTTAACGGCCTCACAGTTAATAACATATAATTTCTTATTAATTTAGTTTGAAATTATGACTATTTTAAATtccattcaaaaatgtatttgacGGCGAATAATATTTATGCCATCATGTGCAACGCTGATTACCATGCCCAATGAATACACTGTTCTGGTTCGAATTGGTACCCAGGAAACGCGATATTGTAGCTATTTTACTGAATTAGCAACATTCCATTGATATTTGGTTGCTCATCGTCACTAGCTTATACATAACCATTcccaggtaggcctacagtaggggAGGCTGTGTTCATTGCTCTCAGCTGACTAAACATTTTCACAACCCTACGCAGGAAATTTGTGTGGGGAATTCTTGCTATTTTGCATGACATCATCATGCAAATACAGCTTCCAGGTTGTAGGTGAAATGCAGGCGAAGGTATGCGCCAGGAGGACCTCTCTCATCACTGAGAATGGGCAGGCTTGTGGGGCATCTGCGGACTCCCAGCTCCCATTTAGGTGCCCTCGGTGTGGAGAGCGTGAGAGGTTCAATAGCCTGGCCTCCTTGAGAGACCACCTGGAATACAGCCACAGCTACTACCACACCATGCACGAGCTGAGCCTCCCGACCCGCAGGGGGCACTCTCACCCAGAGAGAGTCCTGCATGTGCGCTCCCTGAGTGACACACGAGAGGTCACTAGCTGCATAGAGAGGTGTCGTACGCATAGTGTGGGGACGCAGGCAGCGGAGGAGATACAAACTGAAGAAGAGGCCCGTAAAGATGATTTAAAATTCCACAAGTCCAGCCCTGGGACAGATCATATCCCATTTCCATTTGACAACCCTCCAGACCCAGGCAGCAAGCCTGAGGCGGTGTCCCCAGAGTGGAGTGTCTGTGCTGGGGAGGTGTCGGTCAGGCGCAGGCTTGCCAAGGTCCTGCTGGCAGCAGACAGCACCATGCAGAGGAGGCTGCACAGGGTCAGCACAGAGCTGGCCCAGACGGACACAGAGCTGCTGTGTGAGCGTGCCCACTCCCAGCACCTGGCCCAGGAGAGGCAGGAGGTTCAGGAGCGGGAGAGGGCGCTGAGCCACCAGGTGGACATGGCCGTGATGGTGATCGCCACACTAAAGGAGCAGCTGAACGAGTCAGAGTACgagctggagaggagagaacaAGAAGTCATCACCATTCAGAATTTTCTGGAGGCTGCAGCCCAGCATGAGATATGTGGTAAAGTTCGGATCCAACGTTTCATTGAGAACCTGCTCAAACGCATCGCCTTGGCTGAGAGGCTACTGGAGTACTATCAGAGCTCACCCAGTCCACCAACCTACACCGATTACATGCACCAGACAGCTGAAAATGGACCTCATAGAATAACCAAAAGCAGGTCAGCAGGTTATCAGCTGTCACAGTCCTGTCCCCAGGAGGGTAGAACGCACCCCTCCCAGTTAGGACGGGCGTTCCCCAAAGGCCCTAATGAGAGAGTGGGTAACTCTGGCTACTTCAGACCTGACCGCAGGGATGAAGCCTGGACCCAGCGCCGCAGATCAGCTGGATTTGAGGACTAGGTAACCTGACCAGGGCCCGACAAATGAATGTATATATGATAAGTATTTACTGAATGTATAGATAATACTGAGCAGGGGATGCTTTGGCCATGTGTACGCTAGTTTTTGCTCCATTCTGTCCTAGAGGTTGCTACTGTCCTAGTTTCAATTTTGGAAGTACTGTAGTAACTTGATGGATAGGTATTTCTGACCCTCATTGGTGTTTTAATTACTATTAAATCATATTATTGATGGGTGTAGATCTAATAAAATACAGAATTGTATACAAAAAAAACTAGATGGTGGAATTGTTAAATGCCCACTCCAGTAGAAATCCACTTTTGAGGTGAAAGATGGCCAGAGCTTACCCAAGATGTTGCACAACAAGTTAAGTCAATAAGTCATCATATTAGTCAAAGTACAATATATTTGGGCTTTAAGTGACACATCCAAACGTCCCACTTCTTGCAAATCTTTGTGAATGTGGTATCTCTTCCTGTGATATGACATACAAATTATTTTCAGCCTATGTTTCAGGGCTGGGTTTTATTTGAATGTTACCACCCACTAGCATGGCATTGTTTAGAGCTTTGGCCagaaccaaaaggtcgctggttcgaatacccgagcCGGCCAGGTGAAAAACCTGcctgtgcccttgaacaaggcacttaaccctaatttgctccaggggcaccgtactactatgactgaccctgtaaaacaacacatttcactgcacattTCACTTTTTAGCTAGTCTGCATTTAAAATTGGACCATTTTATAAATGGTATAATTGCGTGATATAATAGCATAATAAACCACAATTACTATCCAGATAATGAAAAGGCACCCGCAAAATAAAATTAAAGGAATTTATAGTTTCATGTCATTGTAGCCTATCACTTCACTTTATGAGCATGGGCTGACATGGCTTTGCTGTACTGAAGCCTGCTAGCAGCCTAAAGTTCCTACTAAAGGTTGCACCGTGTctattacaatgtagaaaaacgcATATCGGCTATCTttctatatttatacatattagCAGTGCTTCGTCTTATTCTTTCTAACTATTTCTATCGCGGATTCGCGGACGCAAATTATGGAAGATGCCAAAACTTTGGAGATAACAATAGATGGTGAAGTCAAAAATAGGCCAGTGGTTTCCGTCTATGGCAAAGTTTTCCATAAATCATTGCTTATGACAAATCCAGGTCCAGAACCAGCCATAGAGCCAGCTGGCTAATCTTTTGAATAGTTTAAAAAATAGTTAATAGTTTAAAAAAAGTCTATAAATATTTTGTCATTCTTTGGAGGAACCTAATATGTATTTCCTTTCTAGGACAGGGGATTACGTCGATATAGTGGCGGCAACTtcctttggggggagggggggggggggtcctttaAACTCAAGGTCAAATGCAGAcatttatctcaatatcaaatcatctATCAGTAACGATTAAGTATGTCAATGTgactgttttcaattaaaatggtaaaaaaaactaacaaattGCTTCTGAGCAAAAAGCCATTTTATAAGTAAGACTTTTGCTAAAACTGTCTGGTCTGAGTGAAGGACCTAATGGGATAATGGGAGAAGCCGAATGGAAGGGATATGTAACCTGAAAACTAGATGTTATTGTCAGAGAGGTTTGAAACGCTTTGTTATCGGTCTATTAACTTATACCGCCTGGTAGGCCAAACTCCACCCATGCAAAACGAGCTGAAAGTTCATGTgaccttttcaaacagctctttcataattttcacagtattattccaaccttgtagtgtgtgtgtgtgtgtgtgaaagataTACTAACTTCCTCTGGGGGGGggactggctctaaccagaatggaaa

Function

NR:

description
protein ZNF365-like

GO: NA

KEGG:

id description
K16737 ZNF365, Su48; protein ZNF365

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580661.2 True 3477 mRNA 0.45 5 28597913 28603119

Neighbor

gene id symbol gene type direction distance location
LOC110502541 LOC106607837 coding upstream 26385 28497576 ~ 28571528 (+)
LOC110502539 LOC106607826 coding upstream 131623 28462455 ~ 28466290 (+)
LOC110502531 LOC106607719 coding upstream 457240 28098447 ~ 28140673 (+)
LOC110502528 bic1a coding upstream 519659 28001291 ~ 28078254 (+)
LOC110502527 LOC106607701 coding upstream 604724 27990245 ~ 27993189 (+)
LOC110502543 LOC106607859 coding downstream 15388 28618507 ~ 28621114 (+)
LOC110502544 LOC106607864 coding downstream 30927 28634046 ~ 28652668 (+)
slc22a15 slc22a15 coding downstream 59555 28662674 ~ 28671512 (+)
LOC110502549 LOC106608800 coding downstream 174014 28777133 ~ 28780702 (+)
LOC110502550 LOC106607923 coding downstream 190775 28793894 ~ 28796862 (+)
G1850786 NA non-coding upstream 990 28596634 ~ 28596923 (+)
G1850779 NA non-coding upstream 3559 28594111 ~ 28594354 (+)
G1850777 NA non-coding upstream 4250 28593389 ~ 28593663 (+)
G1850773 NA non-coding upstream 5482 28592194 ~ 28592431 (+)
G1850772 NA non-coding upstream 5765 28591479 ~ 28592148 (+)
G1851026 NA non-coding downstream 181986 28785105 ~ 28785309 (+)
G1851027 NA non-coding downstream 182402 28785521 ~ 28785741 (+)
G1851098 NA non-coding downstream 231503 28834622 ~ 28834828 (+)
G1851127 NA non-coding downstream 254156 28857275 ~ 28857531 (+)
G1849208 LOC106607606 other upstream 1321654 27274338 ~ 27276259 (+)
G1845108 NA other upstream 4243667 24326264 ~ 24354246 (+)
G1851386 NA other downstream 440242 29043361 ~ 29075998 (+)
G1852590 NA other downstream 1415371 30018490 ~ 30025046 (+)
LOC110502560 LOC106607954 other downstream 1944005 30547124 ~ 30659333 (+)
G1853092 NA other downstream 2202431 30805550 ~ 30806454 (+)
G1853162 rps27a other downstream 2223466 30826585 ~ 30834692 (+)

Expression


Co-expression Network