XLOC_037401


Basic Information

Item Value
gene id XLOC_037401
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 45112496 ~ 45122990 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075192
tttGTGCCTGCGCTTGCTTTTGCGTATTCGCGGTGACGCGCACGTTAATTGAAAGAATGGCCGCAGAACACATCCGCGTCGTTTCATTTCTCTGCTTCTTCagAATGACTACACTTATATTTTCCACAGATTCAGCCAAAACACACCTCGATGTTCTATTACTATTGAAAGAATTACCAGTCACTTTTATCTTGGATTGGttgggCTTCAAAGCGATTAGTCACAGGACATTTACGGTCTTTCAGGATGAAACAACAGGGTCGCGGGTGTTTGGAGCTGGCCAAGCATCTGCCATTGAGATGAATGGGAATTCGAAAGGACATTTTCTCCAGGTATTAAACACGT
>TCONS_00073587
ACGTTAATTGAAAGAATGGCCGCAGAACACATCCGCGTCGTTTCATTTCTCTGCTTCTTCagAATGACTACACTTATATTTTCCACAGATTCAGCCAAAACACACCTCGATGTTCTATTACTATTGAAAGAATTACCAGTCACTTTTATCTTGGATTGGttgggCTTCAAAGCGATTAGTCACAGGACATTTACGGTCTTTCAGGATGAAACAACAGGGTCGCGGGTGTTTGGAGCTGGCCAAGCATCTGCCATTGAGATGAATGGGAATTCGAAAGGACATTTTCTCCAGgcatatattttaCTGAGCCTCTTACTGAGGAGGGAGTACCGCAGAAAGCCATCACAGAAAGAAGCATTGCAGGAACAACTGGAGCAGTCAGCTGAGGATTCTGGGCCTGAATTagtgactgtatttacatttggcCCATGCACACTGTTAGCATTCTTGTGTTCTTGAGAGCCTTGGGATCTAATAATTCTCTCCCTGTAAACTCTTCATGGTGGCTGAAAGAACAGTGCCCGATATTTCAAATCCCTGTTTTGCTGCCAGGGAAACCGAATTCTCTGTGGTTCGGAACATTCTCTTGCGTCACTTTTAAAGAGGTGCAAATATTTGGAAGTGAGACGGCATTTACACAGATGTAGATCATGTGTTTTACAACGAACAAGCCCTCGCTCTATTTCTAGCATGTGTTGGGTGCCTGCGAGTCAGCTTAGCGTAGCTTGACAGATGTACCGGCTGCACTTTTAATTATGATGCAGGCCTGAACCCAAAACTCATTAAAACATCTTGAATAACAAAGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000095101

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075192 False 345 lncRNA 0.44 3 45112496 45116841
TCONS_00073587 True 807 mRNA 0.44 5 45112537 45122990

Neighbor

gene id symbol gene type direction distance location
XLOC_037400 BX510317.1 coding upstream 48227 45064155 ~ 45064269 (+)
XLOC_037399 NA coding upstream 67505 45039765 ~ 45044991 (+)
XLOC_037398 retsatl coding upstream 113774 44994214 ~ 44998722 (+)
XLOC_037397 BX571855.1 coding upstream 180203 44932175 ~ 44932293 (+)
XLOC_037396 frzb coding upstream 273348 44832032 ~ 44839148 (+)
XLOC_037402 adarb1b coding downstream 104038 45227028 ~ 45541367 (+)
XLOC_037403 NA coding downstream 138394 45261384 ~ 45261761 (+)
XLOC_037404 NA coding downstream 425797 45548787 ~ 45553378 (+)
XLOC_037405 traf3ip1 coding downstream 482420 45605410 ~ 45667487 (+)
XLOC_037406 asb1 coding downstream 557812 45680802 ~ 45697644 (+)
XLOC_037394 NA non-coding upstream 656388 44455143 ~ 44456108 (+)
XLOC_037389 BX649590.1 non-coding upstream 1256886 43855495 ~ 43855610 (+)
XLOC_037408 BX897692.2 non-coding downstream 698479 45821469 ~ 45821585 (+)
XLOC_037410 NA non-coding downstream 742277 45865267 ~ 45884134 (+)
XLOC_037411 NA non-coding downstream 1255719 46378709 ~ 46395404 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_14095330_14128580 NA coding CI01000009 null 14093645 ~ 14128582 (+)