LOC110502554 (LOC106607935)


Basic Information

Item Value
gene id LOC110502554
gene name LOC106607935
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 29121046 ~ 29632760 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580673.2
aaatctcCCCAATGCTTGTGGAGCTAGCAGGTGCaatctcgtctctctctctcactcctcctccctcttccagtGTGCACTGTGCATCtatgcttttttttttctctcgttTGCATTCGCTCTCTCTCAGCATCGACAGCAGCAGCACAGGATAGCAGCTGTCTACCTGACTAGAATACCAAAGCCACTGATCTGCTAGATCAGCATCATTGTCTAAAACCACAGGAGTGTCAGGCTGTAAAGCTGCAGCGTCCGCGGTGGAGATCTCTAATCATCCGGTAGCAGTCCCTGATGGGACAGAAACCAGCCAAAACTGCAACAAATCACAACATTGACTAGAGGGCTGCAATTCCTCATAGAGGGACCTGAGGTAGAGGAGCCGGGAGAAGAGCTCTACAGGGTGATTTTCAACTGCTCCCTCTATCTTTCTATATATCTTTTACTGTCTTTTTCTGAGAGGATCCTtatcctttccctctcttcttctttctctcagTACGGGAATGTAGCTGGCGGATAAGGGCAGGTTTCTAGGTCTCTGCTGCATTAACAGGCAGCGCACAGAGACAGCAGGGCGCTGAGCGGACAGCTTGGGGAACCTGAGGAACAGGATAAAGCATTGCAAACGACAGATTTATCCACCCTTCTCTTCTACCTCCACCACCCACCCCTCCTTTTCTCTAAGCTCCAGGGTTATTTTTTCTTCTTGTTGCCATCAATTGATTTTGTATTTTTCCCCACTGGAGAATAGCAAGCAACTGAGTGCTGGGAGTGGGCTTGGATTTTCTCCAAAACATAAAAGGAGAATCCCTTGTGAGGGGGGATGTTGTAGACAGCGGGGGTCTGGATAGGGAGCAACGACACACCCATGGctgatctctcttctctctgatgGGAGGGACAGGTTTCTGGGGCTGGCTAGCTGACTCAGCTAAGGCGAGAGAAACCCAGGATCCTATCTGCCTTGCCTGCTGAGAGGCGGGAATCAGAACCAAACCTGCAAGTTTTTCTCAACAGCATCCATAACAAAAACGCCCCATCTTGGAATATTGACGGTGGAAAAGAGAAAGGGTGCGAAATAGAGAGGTCTGGGTTTGATCAGTGTGCAGGTGCTGCGACAAGGTGTCTTCACAGACGGATTTACAGCTGTGTGTCCCTCACTGTCTCCTTTCTATTTTCCTCTTCATCAATTATTTTTGGATTGTCCTTGGAGTTGGACGTCTGGGTTGCTTTTGGACAGGACTCAAACTGGACAAAAGATCATTCCGCATCTACATCTGATTGTTTCACCTCTGTTGTGCGTCTCTGAGTTTGTCTGAGTGTTTGTCTGTACGtttctgtgtatgtatgtgtttgtgaccaTCTCATTGTGTGTGTTTCCTTCTCGATGTCCGGCATTGCCGGCTGCCATTCTGGCTCGTGCTTCCCATGCCTGTCATGCGCCTGGCCCCAAGATTAACCCTTGCTAAGCCGTGCGCAGGATGAGCGAGAGCTCCAGAGCAGTCACATCCGGGGCGGTGATCCTGGAGGAGTGTCCAGAGGGGAGTAGGGAGCAAGAGCAGGCCCAAGGCCAAGAGCCAGGGCCCCTGCGCTGTGGAGGCTGCACCGTGTGGCCCCGCCAGCAGACATGGCTATGTGTGGTCCCTCTGCTCATAGGCTTCATTGGCTTGGGACTAAGCCTGATGCTGCTCAAATGGATTGTGGTGGGCTCTGTTAGGGACTACGTGCCTACAGATCTGGTGGATGCTAAGGGTATAGGACAGGACCCCATgtttcccccccatctctccaagCCCAGCACCTTCCCCAAGAActcagacactaccactactaccatggCAAACCCCACCTCAACCACTGTCACAGCGGTGAGGGGCAGAACTCGAACTGTTGTCGCACACCACCCCAGTGGCACCACTACTACCGCCAAGGTGGGTGGTGCATCAGGCAGCCAAGTTACACCTCGCAGCACCACACAACGCCAAGGCAACTCTGGGGGCGGAGGACCACAAGGCCCTGTTATTACCACAACCACCGCTGCGCCAGTTGCCATTTTTACCACCTCCAGCCCCTCTCCTTTTAACCCCACCTTGCTGCATGACTCCACAGAAATGTGGACGCACAAGCACTCCATGGAGAGGCCTGCCACCACCCCCACACGGACCCATGTGAACCGAAAAACATCGTCACCCACCATTCCTCAAATGCGCTCAGAGCATTTCAAGCAATGTCACGTGAAGGACCTGGCCTACTGCTTGAATGATGGAGAATGCTTTGTCATCGAGACGCTGAGTGGCCCACACAAACATTGCAGGTGTAAAGAAGGCTACCAAGGTATACGCTGCGACCAGTTCCTGCCGAAGACCGACTCCATCTTATCTGATCCGACAGATCACTTGGGCATTGAGTTTATGGAGAGCAAGGAGGTGTACAAGAGACAAGTGCTGTCAATCACCTGCATCACCGTGGGGATCAGTGTTCTGGGCATTCTCTGTATGGTTCTCTACTGTCGGAACAAGAGACGCAGAGAAAAACTCCAGGCCCACTTGAAAGAGAGTTGCAGCCTCAAAAACTACAGCGGCAACGCCTCTGCTTTGGAGTCGTCCAAATCGAGCCTGAGGCCTGACACGGGCCTGCAGCTGCAGAATTATTGTAAGAGGTCCTCCCAGCCACATGAGGGAGCTGTTTGCAAGTCCAGCTTTTCCCAGTGCAACGCCACTCCTACCGACGACTCCAGAGGTCCAGGCTCAGGAAAACATTACAGAAGCAGCTCCCTGTCTCATAGTCCAGACCAGATAAGTAAAGCCACCCATTGGTCAGTACCTCGTAAAACTCCGCCCATACCCAGAGGAAGACGAAATCCAGTTGGAGGATCCAAACATTCTGGCCCCGCCTACCAACACCTCCAGGAATTGGAGTCATCTGAGAGGGAGGTTGAATTGTTGAAAGGGTACCAGATTGTGAGGGCTGGGAGCGACCCGCGACAGGATGCCTTTCTAAATATGCAACCCCCCATGTTGATTGAGCGGTCATGGGAGAGCAGGGTGGAGGTGCGCTGCAGTCTTCTGGACCAGGGCCAGGACCATGATATCTCCACTTCGACCAGGAACCTCAGGTGCCCCAGACATCCCAGCCTCTCATCACCTCCTCCATTTCAGACCTGCTCCATCCCCATCATCCATTCGGTCCAGGGCAACCAGGATGAGGTCTCCTGTTTGCAAACGGCCACCACAGGCTCAGCCACCTGCAGCGCCACGCCCAGTATGGAAGTAGGAGGAGGATGCTCCCTCATCACGCTGCACCACGCCTccacctcctgctcctcctccacgGGGGGCCAGCAGCAGAATGAGATGGCCCTTATCCTGGAGGAGGCCCAGGAGAATCTCAGGGCTCTGACTCTGGCCAGCAGGAAGCAGGAAGAAAGCGGCAGCTTTTCCCCTTCACCGCCCAGAGAGACTGTGTGCTTCCTGACACTCAATGGTGGAGGAGTGAGGGGTGTGAGACCTAATGGACCTATTGAGACCCATTTACTGAGCCCTAGAGAACCCCACACAGACTCAACTCAGCCCTGCCAATGAGACTGTCTAAGCACTAACGTCCTGTCTGGATCTACAGTAAAACCACCCTGGTGTCTTGAAATCCAGACTGCAGAGACTTCTTCATCAGAGGGATGAGATGAAACTCAATAGtgaaaaaatataataaaaaaaaaacaatgtgcATACTGTATGGAAGAATGAACAGAGGGATGGTCTATGAAGTTATGAAGAGAGCAATTATGTATATGCATTTATTTAATGCTTCTTCTTAGACAAAATAAACCAAATAGTCTGTCA
>XM_021580674.2
aaatctcCCCAATGCTTGTGGAGCTAGCAGGTGCaatctcgtctctctctctcactcctcctccctcttccagtGTGCACTGTGCATCtatgcttttttttttctctcgttTGCATTCGCTCTCTCTCAGCATCGACAGCAGCAGCACAGGATAGCAGCTGTCTACCTGACTAGAATACCAAAGCCACTGATCTGCTAGATCAGCATCATTGTCTAAAACCACAGGAGTGTCAGGCTGTAAAGCTGCAGCGTCCGCGGTGGAGATCTCTAATCATCCGGTAGCAGTCCCTGATGGGACAGAAACCAGCCAAAACTGCAACAAATCACAACATTGACTAGAGGGCTGCAATTCCTCATAGAGGGACCTGAGGTAGAGGAGCCGGGAGAAGAGCTCTACAGGGTGATTTTCAACTGCTCCCTCTATCTTTCTATATATCTTTTACTGTCTTTTTCTGAGAGGATCCTtatcctttccctctcttcttctttctctcagTACGGGAATGTAGCTGGCGGATAAGGGCAGGTTTCTAGGTCTCTGCTGCATTAACAGGCAGCGCACAGAGACAGCAGGGCGCTGAGCGGACAGCTTGGGGAACCTGAGGAACAGGATAAAGCATTGCAAACGACAGATTTATCCACCCTTCTCTTCTACCTCCACCACCCACCCCTCCTTTTCTCTAAGCTCCAGGGTTATTTTTTCTTCTTGTTGCCATCAATTGATTTTGTATTTTTCCCCACTGGAGAATAGCAAGCAACTGAGTGCTGGGAGTGGGCTTGGATTTTCTCCAAAACATAAAAGGAGAATCCCTTGTGAGGGGGGATGTTGTAGACAGCGGGGGTCTGGATAGGGAGCAACGACACACCCATGGctgatctctcttctctctgatgGGAGGGACAGGTTTCTGGGGCTGGCTAGCTGACTCAGCTAAGGCGAGAGAAACCCAGGATCCTATCTGCCTTGCCTGCTGAGAGGCGGGAATCAGAACCAAACCTGCAAGTTTTTCTCAACAGCATCCATAACAAAAACGCCCCATCTTGGAATATTGACGGTGGAAAAGAGAAAGGGTGCGAAATAGAGAGGTCTGGGTTTGATCAGTGTGCAGGTGCTGCGACAAGGTGTCTTCACAGACGGATTTACAGCTGTGTGTCCCTCACTGTCTCCTTTCTATTTTCCTCTTCATCAATTATTTTTGGATTGTCCTTGGAGTTGGACGTCTGGGTTGCTTTTGGACAGGACTCAAACTGGACAAAAGATCATTCCGCATCTACATCTGATTGTTTCACCTCTGTTGTGCGTCTCTGAGTTTGTCTGAGTGTTTGTCTGTACGtttctgtgtatgtatgtgtttgtgaccaTCTCATTGTGTGTGTTTCCTTCTCGATGTCCGGCATTGCCGGCTGCCATTCTGGCTCGTGCTTCCCATGCCTGTCATGCGCCTGGCCCCAAGATTAACCCTTGCTAAGCCGTGCGCAGGATGAGCGAGAGCTCCAGAGCAGTCACATCCGGGGCGGTGATCCTGGAGGAGTGTCCAGAGGGGAGTAGGGAGCAAGAGCAGGCCCAAGGCCAAGAGCCAGGGCCCCTGCGCTGTGGAGGCTGCACCGTGTGGCCCCGCCAGCAGACATGGCTATGTGTGGTCCCTCTGCTCATAGGCTTCATTGGCTTGGGACTAAGCCTGATGCTGCTCAAATGGATTGTGGTGGGCTCTGTTAGGGACTACGTGCCTACAGATCTGGTGGATGCTAAGGGTATAGGACAGGACCCCATgtttcccccccatctctccaagCCCAGCACCTTCCCCAAGAActcagacactaccactactaccatggCAAACCCCACCTCAACCACTGTCACAGCGGTGAGGGGCAGAACTCGAACTGTTGTCGCACACCACCCCAGTGGCACCACTACTACCGCCAAGGTGGGTGGTGCATCAGGCAGCCAAGTTACACCTCGCAGCACCACACAACGCCAAGGCAACTCTGGGGGCGGAGGACCACAAGGCCCTGTTATTACCACAACCACCGCTGCGCCAGTTGCCATTTTTACCACCTCCAGCCCCTCTCCTTTTAACCCCACCTTGCTGCATGACTCCACAGAAATGTGGACGCACAAGCACTCCATGGAGAGGCCTGCCACCACCCCCACACGGACCCATGTGAACCGAAAAACATCGTCACCCACCATTCCTCAAATGCGCTCAGAGCATTTCAAGCAATGTCACGTGAAGGACCTGGCCTACTGCTTGAATGATGGAGAATGCTTTGTCATCGAGACGCTGAGTGGCCCACACAAACATTGCAGGTGTAAAGAAGGCTACCAAGGTATACGCTGCGACCAGTTCCTGCCGAAGACCGACTCCATCTTATCTGATCCGAATCACTTGGGCATTGAGTTTATGGAGAGCAAGGAGGTGTACAAGAGACAAGTGCTGTCAATCACCTGCATCACCGTGGGGATCAGTGTTCTGGGCATTCTCTGTATGGTTCTCTACTGTCGGAACAAGAGACGCAGAGAAAAACTCCAGGCCCACTTGAAAGAGAGTTGCAGCCTCAAAAACTACAGCGGCAACGCCTCTGCTTTGGAGTCGTCCAAATCGAGCCTGAGGCCTGACACGGGCCTGCAGCTGCAGAATTATTGTAAGAGGTCCTCCCAGCCACATGAGGGAGCTGTTTGCAAGTCCAGCTTTTCCCAGTGCAACGCCACTCCTACCGACGACTCCAGAGGTCCAGGCTCAGGAAAACATTACAGAAGCAGCTCCCTGTCTCATAGTCCAGACCAGATAAGTAAAGCCACCCATTGGTCAGTACCTCGTAAAACTCCGCCCATACCCAGAGGAAGACGAAATCCAGTTGGAGGATCCAAACATTCTGGCCCCGCCTACCAACACCTCCAGGAATTGGAGTCATCTGAGAGGGAGGTTGAATTGTTGAAAGGGTACCAGATTGTGAGGGCTGGGAGCGACCCGCGACAGGATGCCTTTCTAAATATGCAACCCCCCATGTTGATTGAGCGGTCATGGGAGAGCAGGGTGGAGGTGCGCTGCAGTCTTCTGGACCAGGGCCAGGACCATGATATCTCCACTTCGACCAGGAACCTCAGGTGCCCCAGACATCCCAGCCTCTCATCACCTCCTCCATTTCAGACCTGCTCCATCCCCATCATCCATTCGGTCCAGGGCAACCAGGATGAGGTCTCCTGTTTGCAAACGGCCACCACAGGCTCAGCCACCTGCAGCGCCACGCCCAGTATGGAAGTAGGAGGAGGATGCTCCCTCATCACGCTGCACCACGCCTccacctcctgctcctcctccacgGGGGGCCAGCAGCAGAATGAGATGGCCCTTATCCTGGAGGAGGCCCAGGAGAATCTCAGGGCTCTGACTCTGGCCAGCAGGAAGCAGGAAGAAAGCGGCAGCTTTTCCCCTTCACCGCCCAGAGAGACTGTGTGCTTCCTGACACTCAATGGTGGAGGAGTGAGGGGTGTGAGACCTAATGGACCTATTGAGACCCATTTACTGAGCCCTAGAGAACCCCACACAGACTCAACTCAGCCCTGCCAATGAGACTGTCTAAGCACTAACGTCCTGTCTGGATCTACAGTAAAACCACCCTGGTGTCTTGAAATCCAGACTGCAGAGACTTCTTCATCAGAGGGATGAGATGAAACTCAATAGtgaaaaaatataataaaaaaaaaacaatgtgcATACTGTATGGAAGAATGAACAGAGGGATGGTCTATGAAGTTATGAAGAGAGCAATTATGTATATGCATTTATTTAATGCTTCTTCTTAGACAAAATAAACCAAATAGTCTGTCA

Function

NR:

description
pro-neuregulin-3, membrane-bound isoform-like isoform X2

GO: NA

KEGG:

id description
K05457 NRG3; neuregulin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580673.2 False 3839 mRNA 0.52 9 29121046 29632760
XM_021580674.2 True 3836 mRNA 0.52 9 29121046 29632760

Neighbor

gene id symbol gene type direction distance location
LOC110503060 NA coding downstream 139208 28969160 ~ 28981892 (-)
LOC110502553 NA coding downstream 188446 28919846 ~ 28932600 (-)
LOC110503100 hecd2 coding downstream 242619 28859178 ~ 28878427 (-)
LOC110502548 LOC106607892 coding downstream 427397 28688014 ~ 28693649 (-)
LOC110502547 LOC106607910 coding downstream 434392 28683439 ~ 28686654 (-)
LOC110528531 NA coding upstream 107795 29740555 ~ 29746968 (-)
LOC110502559 LOC106607945 coding upstream 521309 30154069 ~ 30504037 (-)
LOC110502561 smek2 coding upstream 1050697 30683457 ~ 30707617 (-)
LOC110502562 LOC106607983 coding upstream 1075061 30707821 ~ 30716157 (-)
LOC110502567 rps27a coding upstream 1193827 30826587 ~ 30834728 (-)
G1851442 NA non-coding downstream 34684 29086143 ~ 29086362 (-)
G1851357 NA non-coding downstream 92817 29027949 ~ 29028229 (-)
G1851300 NA non-coding downstream 140687 28980151 ~ 28980359 (-)
G1851279 NA non-coding downstream 169080 28951761 ~ 28951966 (-)
G1852247 NA non-coding upstream 20998 29653758 ~ 29654027 (-)
G1852260 NA non-coding upstream 26611 29659371 ~ 29659631 (-)
G1852263 NA non-coding upstream 28167 29660927 ~ 29661158 (-)
G1852273 NA non-coding upstream 35629 29668389 ~ 29668681 (-)
G1852487 NA non-coding upstream 146609 29779369 ~ 29779695 (-)
G1850441 NA other downstream 1042795 28074925 ~ 28078251 (-)
G1846858 NA other downstream 3680659 25439807 ~ 25440387 (-)
LOC110502462 LOC106607169 other downstream 5775275 23344353 ~ 23358461 (-)
LOC110502461 LOC106607165 other downstream 5902776 23213905 ~ 23218749 (-)
LOC110502574 LOC106608078 other upstream 1518849 31151609 ~ 31239202 (-)
G1854905 NA other upstream 1584837 31217597 ~ 31218171 (-)
G1855326 NA other upstream 2347237 31979997 ~ 31981333 (-)
G1855821 NA other upstream 2882306 32515066 ~ 32515408 (-)
G1855822 LOC106608363 other upstream 2882989 32515749 ~ 32516281 (-)

Expression


Co-expression Network