LOC110502560 (LOC106607954)


Basic Information

Item Value
gene id LOC110502560
gene name LOC106607954
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 30547124 ~ 30659333 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580679.2
TCTCATCTATCTTTCCCAATCTCTCTCGATATCTGTGTTTCCATCTAAAGGGTGGAGAAGTGTGAGGAatagagggatagaaagaggggagagggagaacgggagagagagggaggaagtaggagagggagaaatggagaggggggagattgATAGCATCATGCCAGGACTCAGTAGCGTCCTGTTTCTTTACTCTACATTATACCTTTCATTTGGACGCTGTCCAGCAAACAGGAGTAGCAGCGTGTGAGGGGACAGCTTTCCCTCCCCTGTGGGAAACAGAGTGCGGCTCCtgcccaggacacacacacaaactaaacacacactcacacatgtgcTGCGAAGAACACGGTCGACACAGGGATGCACCATGAAGTCTCAGCAGAAATGCATCGTAATCTTCGCTTTGATGTGCTGTTTCGCTGTCCTGGTGGCCTTGATCTTCTCGGCGGTGGATGTCTGGGGAGAAGATGAAGACGGTATAACAGAAGAGAACTGTAACAAGAACTGCAGGGTAGTGCTTGTGGAGAATATTCCAGAAGATGTCACCTTCTCTGAGAATAGTACGGCCCACCTCACCCTCTCTGCTGGGCTGCATAGCCTACTGGACCTGGCCGTGGCTGGTCGTTCTGTGGAGATTGTGTCACCACAATGGAACCTGAACTCCTCTGACAATGAATCAAGCTTCCTACCATCTTCTAGGCAGGGTCAGGCTATGCTGCAAAGACTGCAGGGGCTGAAGAAGAAGGGAATCAATTTGAAGATAGCTAGTGGAATGATCGACTCTGTAGAGCTCAAGAGCCTCTCTCGTCTGAGTGAGGTGCACTACATTAACATGACTGCCCTGACCAAAGGCTTCCTGCACTCTTCTTTCTGGGTGGTGGACAGGAAGCACATCTACATCGGCAGTGCCACCATGGACTGGCGATCACTGTCCACGATGAAAGAACTGGGGATCATCATCTACAACTGTAGTTGTCTGGCACTGGACCTGCACAGGGTATTCAACCTCTACTGGCAGCTGCAGTATAAGGACTTTGTACCGTCCATCTGGTCCAAGAGGCTGAGTGCCCTGTGGAACAAAGATGAAAACCTCCCACTTCTCTTCAACAACACCAAGGCTGAGGTCTTTCTCTCTAGCTCTCCAGATGTCTTCTGCCCTAAAGACAGGACCAGAGACCTCGACGCCATATCCTATGTGATCCAAAAGGCCAAGAAGTTCATCTACATATCCATTACAGACTACCTGCCTCTCACTAACAGGAATTCTCACAGATACTGGTCAAGTATAGATGGGATGCTTCGGGAGGCCTTGATCCTGAGAAACATCAAAGTGCGTCTGTTAGTAAGCTGCTGGGAGCAGACACACCCCCTGACCTTTAACTTTGTGTGGTCCCTGAAGACCTTGTGTATGGAGCTCCCTAACTGTTCACTGGAGGCTAAGTTCTTCAGCACCAGGGAGCAGAGAGATGGCACGCTACAGGGAATCAACCATAACAGATTCATAGTGACAGACAGTGCTGTGTACATAGGGAACTTTGACTGGGTGGGGAATGAGTTTATGTTCAACGCTGGAGCAGGCATGGTGATCAGTCAGGCAGAGGGGCTGAAGGAGAGGAACTCAACGTTGGTGGAACAGGTGAGGGCTGCGTTCCAGCGGGACTGGTATTCACGCCACACCATGAGCCTGCAGGCTAACAAGATCCCAGTCTGCAACAAGCACCAGCTCAACCAACTGGCACATCTCAAAATCACTCAACCACCAGAGAGCAGCGGGAGTCAGGAGAGTCCCAATGGCTCCTTCTGACTCCAAAGACATGTGGTGTGTTACAAGACTTTTATGCTTTAAGAGAAAAATAACTGTTTGAATGCTGAAATCGGATACAATTTACAACTTGTTTTTAGGAAATATTTGTTTTCTATCACGTCTTCTGTTTATTTCATCCTCTTTCATCCTCTAAGACATGGGCAGGGAActgatgaaataaatatattttctattgatTGCCAAACCTAAATATCGTTaattgtttaatccattttaccaATAATGTCCTAATTTATCACAACCCTTTAAAACCCTCTCTGACCAAAACACGATTGGAGCAGCATGGACAGTAGtgtggagatacagtatatcctatTCAAATCTATACTCCAAGGATGTTTACCTTGTGTCTTCAATATTTGTTTTTAAAGTGCAGAATTCCTCCAGCCTCGACCAAATGAACAGGTGCCATTTGTCAGTTGGACAACAGCTGATCAAATGAAGCGAATGGGAAAATAACAGACAACTGCATGTCTTGATCTCATCTGACTCATAAGCTACTGACATCTTTCGGGTGTTTATTGTTGCAGAGTACAGACAATTATGCCCCATTGGCATCAATCTATTTTGGTATTGCATCTAAAATCCTGTTTTGGTCTCAACTAGAATGTATACTTGATTACGTTTAATATCACCATGCCAGGGGTTGATCTCGGAATCTTAACTCAATTTCCAGGATTATGATACATTAACTAATTTTAAGATGAAAAAAAATGTTGCATATTTTATTCTATTCTGTATATTGTCTTTGTTGTAAACACTCAAAAGGGTAGAAATAGATATGCATTCAACTTTTAATAAAGCTTTAGGCCTCTTGTGTTGTTTTAACATGATCAAGAAATTGATCTATTACTGAATTTTTCATGAAATTTACATTTCTGTAAAAAGGTGTCTTGCTTGCTTGATTATTTTGGAAAGTATTGAAAACCACCACTACAGAAACAAAACTTCCCTGGGCTTTACTTAGTTTGTAAATGGTTATGCTACCATACCACTGTCATATGCTgtcatataataaacagagaaacAGCAACAGAGGTCGATAGCACACTAACATTGGAAGGGGCTGAGCTGCCATTTAAGGTCTAAGGTATTCGTTTGGTCAAGTTACAAGACTAGACAATGATTTTACCTAATGGAATATTTGGTAATTGATTCCCAAGTTCTTCATGGATAATTGGGTTTCTTTCTGGTATAACTCAGCTGGATAAAGGTGTCTAACCAGTGGTACAACTGTAGCTCTCTTTGGAAGCAGATGTTGACTTATTTACCAGATATTGAAAAAACAGTTGTTGGAGGGGATTTCAGTCAGTAAGATCAATATCATGAATTTTTAAAGACTGCTAGACACCATTTCCAGTTTCCCCTAAGGACATGTTTTGAAATAAGACCGCATGCATTGCTTAACTTAACACTGACAGAGAAAATAACCACAGAATCTCATCACCCGCATGATACAAGCTTTGCACCTGATCATAAAAGATGATCAACTACAGGAGTTGTTAACATCTTTTAATGATTATGGCACGCCAATTAATAAATGCTGTATGTAATAGCCTATCTGTGGTGGTTGATGGGCATTATACTTATATTAATTGTAATGTCTTATATCTGTATTTTCATTGTCTTTTTACAGTAATATAATGGGAGAACACTTTCTCTATGGTTACAGACGGTTCTCTTTGCACATATTCTGTTTTCATTGGGGTTCTTTTATATCTGTACCTATTCTGATACAGGAAAAAATATTAATAGTAGACTGAAAAAATAACAATGCACTTCCTGAAAATATTTTGTCAGTGTTAACCAGAACATAAATGTAGCATTAAGCATTAACAAAGATCTATGATGTACACTGCACTTGTGCCAGACAATGTTCTTAAAATAGTTtaatctgagagtaaatatatGTACAAcaatttaacctttaactatgTCCTCTTATCTTATTAAAAAGAGGGAGTCAAAGGCATCTGACTGCTTTTGGTGCAACAGTCCAGAGTGGGCTATTTTGAATAAAGAGTACCTCAATATTGACTGTTTGGGGTGCTCTTTGTCACTTTTTAAAACTTATTGCTGACAAATCTTCAGTCACTGTATTACTCTTGATGTAGCAATGCTGGGATTAACATTGACATATTTTTtcatttaacagacgctcttatccaaagcgacttacattTACTAACCTATACATCGAACCCATTAAGAACAGATCTCTCGCAAACCAAATTTGGGGTGAGTCCCAGATACAATCGATAAACTGCCCCTGACTAACTGTTGCCATCTAGAGTTAGTTTGAGGAAAGGCTATTTCTCTTACCTGCAAAACAGGCACAAAATATGTCTGAAATAATCAATTGTGGATTAGACAGATGTCCTACATTTGATTAGAATTGTCTCCTGTGTTGTTTTCTCAAGATGTTACATTAGATTGGTAAATCCACAGTAGGCCAACATGTCATAGGCTACTACTGACTGGTAAATCTGTTCATTAAAGGTATGATTGTAATATTAAAATATTAATTGGAAGGATACCACTGTGGTCAAGGTGACCACATAGTTAATTCCAAAGCACATTGCATCACATCACAACATTGAAGACGTTAATTTGACTACCGTCTATTACAGTACAATTACTGCCCTCTGGAGGACAATATGTCCCACCAATTGATTATACAGagtatactgagtgtacaaaatattaagaactccttcctaatattgagttgcacacctcGGCCCCACAAATCGTTCCACCAGGGATGCTGgatcatgttgactccaatgcttcccacagttatgtcaagttggctggatgtcctttgggtggtggaccattcttgatacacacgggaaactgtgaAATACCCAGCGGCGTAGCAGTTCTCGacacaaaccggtgagcctggcacctactaccataccccattcaaaggcacttaaatatttgatCTTGCCCATTCAGcccctgaatggcacacatacacaatccctgtctcaattgtctcaaggtttaaaaatccttctctaacctgtctcctccccttcatctacaccaattgaagtggatttaagtgaaatcaacaagggatcatagctttcacctggattaacctggtcagtctgtcatggaaagagcaggtgttcttaatattttgtccAATCAGTGTACATTGTTTTGCATCTATTTTGCTCAATTTTGGCATACTCACTCCTTGTATGCCCTGCCTTTATGAACTGTATAGTACAATAGACAGAGCCTTCTTTTAAAATGATAGAATTTCAAAATACAAAAGGAATGTACATTTATTGTATAACCTTGTTGATGCCTGTATCGAATTGATACTTTTAATTTGTACTCTTAATAAAAAATGTTCTGACATTG
>TU2120765
TGATCTAGACGGGTCTCTTCTTCCTCCGTCAGTTTCTTCTTCCTCCTTCCGCACAAAACATTGGATCCGTGAGCCCCAAGCCAGGGGTCTGAGCAGAGGGCTTCTCCAGCCGAGCCTGACATGAGGGGACGGAGATGCGCTCAGCCGGGCTGCCTACAGTGGGCTTTATGGAGCTCCAGCTGAAGGGGGGTGGTCCCCTGGTGGTCCCGGCGAATACCATCTACAGCACCGTCCAGCAGCAGGACTACTCTGCAGGCGTATGGCTCCGCAGGAAAGAGAAAAAACTGGAGCATTCTCAGCAGAAATGCATCGTAATCTTCGCTTTGATGTGCTGTTTCGCTGTCCTGGTGGCCTTGATCTTCTCGGCGGTGGATGTCTGGGGAGAAGATGAAGACGGTATAACAGAAGAGAACTGTAACAAGAACTGCAGGGTCAGGCTATGCTGCAAAGACTGCAGGGGCTGAAGAAGAAGGGAATCAATTTGAAGATAGCTAGTGGAATGATCGACTCTGTAGAGCTCAAGAGCCTCTCTCGTCTGAGTGAGGTGCACTACATTAACATGACTGCCCTGACCAAAGGCTTCCTGCACTCTTCTTTCTGGGTGGTGGACAGGAAGCACATCTACATCGGCAGTGCCACCATGGACTGGCGATCACTGTCCACGGTATCTTAGTATATTCACTACATTATTTCACCTAGTGTACCTGTGTATATTTCTGTAACATTTTTACCCAATTCAATGAGACCACCTATGAGTACACCTCATCTTGACTATGTTCCATACCTTGATTACGTAAACCCTTTTACCAACCAATTGTGTACACTGTTTGATTTTTAGTTCTGATATTTGACAGGTATGTTGAGGCCACTGTGTACAGCTCTCTTCTCTGGTGATTTGTCCCATGACTCAGCAATAAATATTTATTCAAACACTGCTATTTACCCTAGGAGAACAGCATACATTAATTGGCTCAGGTTGCACAAGCATACTGAATAGGAAACAAATGCAACCTTATAGTTGGCAGAAAACTGAATTAATTGAGTAGGGACAAAAAGGAAATGTGGACATTCTTTCATGTGCTGCTCAAAGCTGGAAAAGTACAACGGTTCATTAAAGTGTGACCCCATTCATTGTACCTAGCCTGTCTATCTTTAGCACTTCTCTGAAATAAACCCTTGCTTGAAAAGGGCATCACTTGAAAAACCCAGTTGtgagagtggataggagaggcCTGGTGATTGGATGTGCCTGG

Function

NR:

description
inactive phospholipase D5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580679.2 False 5215 mRNA 0.41 10 30584896 30659333
TU2120765 True 1253 TUCP 0.47 4 30547124 30653216

Neighbor

gene id symbol gene type direction distance location
gfra1a rtgfra1 coding upstream 440083 30043527 ~ 30144813 (+)
si:ch1073-126c3.2 NA coding upstream 589085 29993597 ~ 29995811 (+)
LOC118943859 NA coding upstream 968326 29613252 ~ 29616570 (+)
LOC110502556 NA coding upstream 1450043 29131643 ~ 29134853 (+)
LOC110502552 tsn14 coding upstream 1667490 28901697 ~ 28917406 (+)
LOC110502563 LOC106607969 coding downstream 7211 30666544 ~ 30682724 (+)
LOC110502565 LOC106607988 coding downstream 69055 30728388 ~ 30816688 (+)
LOC110502570 rtn10 coding downstream 215477 30874810 ~ 30909320 (+)
LOC110502572 LOC106608074 coding downstream 530017 31189350 ~ 31192215 (+)
LOC110502577 LOC106608097 coding downstream 697114 31356447 ~ 31380224 (+)
G1852632 NA non-coding upstream 617475 29967213 ~ 29967421 (+)
G1852631 NA non-coding upstream 617764 29966859 ~ 29967132 (+)
G1852630 NA non-coding upstream 619713 29964886 ~ 29965183 (+)
G1852628 NA non-coding upstream 620451 29964221 ~ 29964445 (+)
G1852573 NA non-coding upstream 700263 29884415 ~ 29884633 (+)
G1853097 NA non-coding downstream 49420 30708753 ~ 30709917 (+)
G1853099 LOC106607983 non-coding downstream 55753 30715086 ~ 30716130 (+)
G1853156 NA non-coding downstream 159680 30819013 ~ 30819225 (+)
G1853161 NA non-coding downstream 165734 30825067 ~ 30825321 (+)
G1853162 rps27a non-coding downstream 167252 30826585 ~ 30834692 (+)
G1852590 NA other upstream 559850 30018490 ~ 30025046 (+)
G1851386 NA other upstream 1508898 29043361 ~ 29075998 (+)
LOC110502541 LOC106607837 other upstream 2059659 28497576 ~ 28571528 (+)
LOC110502528 bic1a other upstream 2578682 28001291 ~ 28078254 (+)
LOC110502527 LOC106607701 other upstream 2591933 27990245 ~ 27993189 (+)
G1853092 NA other downstream 146217 30805550 ~ 30806454 (+)
LOC110502584 LOC106608814 other downstream 961084 31620398 ~ 31624184 (+)
morn2 morn2 other downstream 1208531 31866319 ~ 31869743 (+)
LOC110502602 LOC106608363 other downstream 1843036 32489267 ~ 32530254 (+)

Expression


Co-expression Network