LOC110502574 (LOC106608078)


Basic Information

Item Value
gene id LOC110502574
gene name LOC106608078
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 31151609 ~ 31239202 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580715.2
TTtttctgccatctagtggacaaagTGGCGCAAGCTTTTCTTTTGCCAGTTCCTCCCGAGATTATTCTGGACAACTGTTGAATTCACCATGTCCAATGACGCAGCTGGTGCAAAATTGTGTTCTGTAGATTTTGAGATTTTTGGCCATGTCCAAGGGGTCTGTTTCAGAATGTACACAGAAAAGGAGGGTCTGAGACTGGGTCTGTGTGGCTGGGTAAAGAACACCAACAAGGGCACTGTGGTCGGCCAGGTTCAGGGGCCTGCAGACATGATCTGTGAGATGAAGGTGTGGCTGTGTAAGGAGGGGAGTCCCAGCTGTTCCATCACCCGGGCCTCGTTCTCCAATGAGAGATCCATTGACAAGGTGGAGCTCTTTGGCTTCAAGACACGCTTCTGAGGAACTCCCTTCATCCAACGCCACTCTAACCACACCCTCTCCAGTGCTTTTACCACATCAATGTCACCTACGGTCTCTGTGGGTACCACCTTATGTTTCTAAATGCATTGTTTCGTTCCCAACCTTTctgaaaaatacataaaaaaatgtcAAGATTTTTTCAGATGCCTAAATCGATTATGCAGACAGTTTGAAATTGTGTGACATTTTTGTTTTAAGTAGAAGCTAATCCAAATAGTTGCTCATCCAAAAGTTGTTGTCTTTTTCTGATAAATGCATTCCCCGTCTGAACATTTTGAATGTAACATTCAGGCTGGCAGAGCAGCATATATTGTCTGGCAGCTTTGTGCTTTGCAGATTCTCAATGTTTTTCTTCTGAACATGTAATGCAATAAAACCATTCAAGCTCGA
>XM_036960166.1
CCCACCACAAGACCGTAGATAACCCATCAGCTCAGCTCTCACCACTTCTGTGCCTATGAGTTTCTGGGATGAGAGGTGCTCTTACCAAAAGAGAAGGAACTATGTGACATGATATTGGATTGGCTGACGTGAAATCCAGGGCCTCATGGCTATGCTGAGGCAGTATCATGACGACACAGGCTTTAGTGAGAGGAGCCTGAACCCTTACACAGAAAAGGAGGGTCTGAGACTGGGTCTGTGTGGCTGGGTAAAGAACACCAACAAGGGCACTGTGGTCGGCCAGGTTCAGGGGCCTGCAGACATGATCTGTGAGATGAAGGTGTGGCTGTGTAAGGAGGGGAGTCCCAGCTGTTCCATCACCCGGGCCTCGTTCTCCAATGAGAGATCCATTGACAAGGTGGAGCTCTTTGGCTTCAAGACACGCTTCTGAGGAACTCCCTTCATCCAACGCCACTCTAACCACACCCTCTCCAGTGCTTTTACCACATCAATGTCACCTACGGTCTCTGTGGGTACCACCTTATGTTTCTAAATGCATTGTTTCGTTCCCAACCTTTctgaaaaatacataaaaaaatgtcAAGATTTTTTCAGATGCCTAAATCGATTATGCAGACAGTTTGAAATTGTGTGACATTTTTGTTTTAAGTAGAAGCTAATCCAAATAGTTGCTCATCCAAAAGTTGTTGTCTTTTTCTGATAAATGCATTCCCCGTCTGAACATTTTGAATGTAACATTCAGGCTGGCAGAGCAGCATATATTGTCTGGCAGCTTTGTGCTTTGCAGATTCTCAATGTTTTTCTTCTGAACATGTAATGCAATAAAACCATTCAAGCTCGA
>TU2122822
CACGGAGTCCTGTTTGTCACATTTTGAGGGAAGCAGCAGACTCTTGATACTAAATGAAGTAGATCGGTGCACCATCGGCGGTTCTTTCTGATCTTCCATGCCGGACACTGACAAAAAAAAGGATTGGGCTTTGTGTTTAAAAAGGAAAAGGGGTCTGTTTCAGAATGTACACAGAAAAGGAGGGTCTGAGACTGGGTCTGTGTGGCTGGGTAAAGAACACCAACAAGGGCACTGTGGTCGGCCAGGTTCAGGGGCCTGCAGACATGATCTGTGAGATGAAGGTGTGGCTGTGTAAGGAGGGGAGTCCCAGCTGTTCCATCACCCGGGCCTCGTTCTCCAATGAGAGATCCATTGACAAGGTGGAGCTCTTTGGCTTCAAGACACGCTTCTGAGGAACTCCCTTCATCCAACGCCACTCTAACCACACCCTCTCCAGTGCTTTTACCACATCAATGTCACCTACGGTCTCTGTGGGTACCACCTTATGTTTCTAAATGCATTGTTTCGTTCCCAACCTTTctgaaaaatacataaaaaaatgtcAAGATTTTTTCAGATGCCTAAATCGATTATGCAGACAGTTTGAAATTGTGTGACATTTTTGTTTTAAGTAGAAGCTAATCCAAATAGTTGCTCATCCAAAAGTTGTTGTCTTTTTCTGATAAATGCATTCCCCGTCTGAACATTTTGAATGTAACATTCAGGCTGGCAGAGCAGCATATATTGTCTGGCAGCTTTGTGCTTTGCAGATTCTCAATGTTTTTCTTCTGAACATGTAATGCAATAAAACCATTCAAGCTCGATGTTATTAGAATTCAATACAAATGCACTATTAAATAGTTA
>TU2122823
CAGTTCCTCCCGAGATTATTCTGGACAACTGTTGAATTCACCATGTCCAATGACGCAGCTGGTGCAAAATTGTGTTCTGTAGATTTTGAGATTTTTGGCCATGTCCAAGGGGTCTGTTTCAGAATGTACACAGAAAAGGAGGGTCTGAGACTGGGTCTGTGTGGCTGGGTAAAGAACACCAACAAGGGCACTGTGGTCGGCCAGGTTCAGGGGCCTGCAGACATGATCTGTGAGATGAAGGTGTGGCTGTGTAAGGAGGGGAGTCCCAGCTGTTCCATCACCCGGGCCTCGTTCTCCAATGAGAGATCCATTGACAAGGTGGAGCTCTTTGGCTTCAAGACACGCTTCTGAGGAACTCCCTTCATCCAACGCCACTCTAACCACACCCTCTCCAGTGCTTTTACCACATCAATGTCACCTACGGTCTCTGTGGGTACCACCTTATGTTTCTAAATGCATTGTTTCGTTCCCAACCTTTctgaaaaatacataaaaaaatgtcAAGATTTTTTCAGATGCCTAAATCGATTATGCAGACAGTTTGAAATTGTGTGACATTTTTGTTTTAAGTAGAAGCTAATCCAAATAGTTGCTCATCCAAAAGTTGTTGTCTTTTTCTGATAAATGCATTCCCCGTCTGAACATTTTGAATGTAACATTCAGGCTGGCAGAGCAGCATATATTGTCTGGCAGCTTTGTGCTTTGCAGATTCTCAATGTTTTTCTTCTGAACATGTAATGCAATAAAACCATTCAAGCTCGATGTTATTAGAATTCAATACAAATGCACTATTAAATAGTTA

Function

NR:

description
acylphosphatase-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580715.2 False 808 mRNA 0.44 4 31151649 31170023
XM_036960166.1 False 841 mRNA 0.45 3 31151649 31239202
TU2122822 False 843 TUCP 0.43 4 31151609 31189596
TU2122823 True 802 TUCP 0.43 4 31151609 31169977

Neighbor

gene id symbol gene type direction distance location
LOC110502571 LOC106608059 coding downstream 11117 31015540 ~ 31140532 (-)
LOC110502569 LOC106608004 coding downstream 141116 30908818 ~ 31010549 (-)
LOC110502567 rps27a coding downstream 316921 30826587 ~ 30834728 (-)
LOC110502562 LOC106607983 coding downstream 435492 30707821 ~ 30716157 (-)
LOC110502561 smek2 coding downstream 444032 30683457 ~ 30707617 (-)
LOC110502576 znt6 coding upstream 15869 31255071 ~ 31337901 (-)
LOC110503101 LOC106608102 coding upstream 184025 31423227 ~ 31437297 (-)
LOC110502582 NA coding upstream 280752 31519954 ~ 31557450 (-)
LOC110502583 LOC106608142 coding upstream 320612 31559814 ~ 31615144 (-)
LOC110502585 NA coding upstream 399449 31638651 ~ 31643143 (-)
G1854791 NA non-coding downstream 69004 31058297 ~ 31082645 (-)
G1854772 NA non-coding downstream 145599 31001046 ~ 31006050 (-)
G1854770 NA non-coding downstream 152058 30999367 ~ 30999591 (-)
G1854763 NA non-coding downstream 168348 30982987 ~ 30983301 (-)
G1854925 NA non-coding upstream 4572 31243774 ~ 31243991 (-)
G1854926 NA non-coding upstream 5682 31244884 ~ 31245085 (-)
G1854929 NA non-coding upstream 9577 31248779 ~ 31248986 (-)
G1854933 NA non-coding upstream 13614 31252816 ~ 31253311 (-)
G1854935 NA non-coding upstream 14938 31254140 ~ 31254353 (-)
LOC110502553 NA other downstream 2219104 28919846 ~ 28932600 (-)
G1850441 NA other downstream 3073398 28074925 ~ 28078251 (-)
G1846858 NA other downstream 5711262 25439807 ~ 25440387 (-)
LOC110502462 LOC106607169 other downstream 7805878 23344353 ~ 23358461 (-)
LOC110502461 LOC106607165 other downstream 7933379 23213905 ~ 23218749 (-)
G1855326 NA other upstream 740795 31979997 ~ 31981333 (-)
G1855821 NA other upstream 1275864 32515066 ~ 32515408 (-)
G1855822 LOC106608363 other upstream 1276547 32515749 ~ 32516281 (-)
G1856217 NA other upstream 1398223 32637425 ~ 32646140 (-)
LOC110502621 LOC106608559 other upstream 2356956 33590457 ~ 33601995 (-)
G1854862 NA non-coding upstream 1384 31190980 ~ 31191669 (-)
G1854898 NA non-coding upstream 18398 31207994 ~ 31208233 (-)
G1854906 NA non-coding upstream 28665 31218261 ~ 31218500 (-)
G1854919 NA non-coding upstream 43127 31232723 ~ 31233051 (-)
G1843946 NA other downstream 7918186 23182987 ~ 23233423 (-)
G1854905 NA other upstream 28001 31217597 ~ 31218171 (-)

Expression


Co-expression Network