XLOC_037404


Basic Information

Item Value
gene id XLOC_037404
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 45548787 ~ 45553378 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074934
ttgctaatgcttaataaattatttatagtgtgtagttattataaagtgttaccatgtttTTTTAATGGCTGAGTCCTAAATATTGACCACTTTTAAGTTGGTTTGATTTTCTATTTTGCAAGTTTTACACCATGGCCACAATTAAAAGCTTTTATAACATTTTCTTAAAGATTTCTATTGTTTTAGTCAAGGAAAACAAAACAGTGCACAGGTTTGGCATGACAATTTTAGGCAATTTTTAGGTGAGCTATTCCtttaaatcattcaaatatatGGCCGCATTTACAATAGATTCAAATCCCCcattttagtttcatttcttTCAATGTGGAACAGATATTACTTATGTTAACCAATTGGTTTCAAGCCTCATTCATATATGGAAATTAATGTCATATGCACTTGTGTCTGCTTTGTGAACAGACGGATATGATATTCCCGTCAATCCAATCCATTGCTGAATAAGTGATGGTGATGAATTTCATCAACTCATACACGAATTGAGATCGCACGACTTTTTGATGTCACATTATTAGAAGACGAAGTCTGTCGTCATCTTTTTTCCCTCTGCCCTTTAACTCTAAATTTTGGctgacctttaaaaaaaaattttaaatcgcACCATTTATACTTCctttccagcatatgcttttctGGGTCAGTATCTTAGGTGCAGATATTGGTCAGTTTTAAAAGATGTAAGCTGGAATCACATATGGTCAACCAATCAGAATTGGCCATCAAGCCCAGCACTGTAAATGCGACTTTTACAGTAATGATGGGCCACAGACTGTGCTCTTCCATGTAATCAGATCCTCATCACACTCTGCCAATGCTATCATTCCATTCCCGAACCCACCTCGGTAGCATCAGGTTTCTCCAGCAggatattttgttgatttcaaATCTTTTAAAGAAACCAGCAGTATGCGAGTTTGTCcattggtttgtgtgtgtttgttttgtgtaccTGCTGCTGAGCCCAGTCGGCATTCTGCAGAGAAAATTCGGCAACAAGACTGAGAGATTTCTGTGGAATCTTTACTCTAATATGCTGTCATATATTCTCaatatggattattagattatctGACATACAGttgttggacaatgaaactggtTTTAAAGcccaataattcattagtatggtgtaggggCTTCTTTTGCGTCCAGTACAGCATCAATTCGTCTTGAGAGTGACCCATACAAATCCTGCACAGTATCCAGaaggattttgagccattcttcttgcagatAAGTGGCCAGGTTTTGATTTAATGCTGGTGGAGTTAAATGtttcctccaaaacaccccaaagtggctcaataatatttagatctggtgactgtgcaggccatggagGATGTTCAGCTTTaagttcatcaaaccactctgtcaccagtcttgctgtttGTAttagtgcattatcatcctgatacttGTCACCGCCTTCAGTATCCAATGTTTAAAACCATTGTGTGCACATGGTCCTTCAGAATGGTTCAGTAGTCCTGATGCGCCAAATTTAGCaatgaaacctccaacactaaattggccagtgtttcagtttaAAATATGTAGAATCCCTCCATTGACAAGTATATTGTGGTAATAGtactaaatgctgctttgtttagtCTCATCACACTCTGCCATTGCTTTaatttcaccccccccccccccccccatcaatGGCATCAGGTTTTTCCAGCAGGATATTTTGTTGCTTTCAAATCTTTTAAAGAAACCAGCAGTATGCGAGTTCGTCCGTCTGTCCGTTggtttgagtgtgtttgtttcgTGCACCTGCTGCTGAGCCCAGTCGGCATTCTGCAGAGAAGTTTCGGCAACAAGACTGAGAGATTGCTGTGGAATCTTCACCAAAGATgtcaatttattttcctttggaaGCGTTTAAACAAATTGagagtattttttaaaaaacaaaacggtTATTGGTGCAAAGATTGTTCAGCATTTTACGGTCCTGCCTCGGTTTGagttgtgttgtttttatatttgctaatgtatttttatttgtattctttTTCCAAGATGTGCATTTGAGTTGGATCAGTCAGGACTGGATTTAGGACAGGATTGTCTTTCTCAGTATTCTGGTTCACAGATGGATGTACTGCTGTAAATATATCGTGACCCTCTCTGATACAGTTAGACCCCTTCCGTATGTGCTActaattttcattttgtttttccacTCAAAAAGCAACATGCATTTTCGTTTTTAAGGTCTCGAAATGCCAGGGCGGCCGTGTCCTTGTCCTGTAATGTATTTTCTGACGGACCCATGTGAGCGTTCAGGGATCTGCAGTACTGTAATGATTAATGACTGTAGACTTTGGCTCCTTTTTGCTCTAATGGAAACGATTACGGCCTGAAATTAATGAGCACAGTCGGTTCTACGTAAATGTGGCTCAGCAAAAAGTAGATCTTTCTGCTGGTGACATTTTTCAAGGACGGGAgacttatgaaaaaaatatagtttctttcttttgcatcattttattttcattttcacctctcctgctgtctGTTTTGGGGGGGATTTTGATGGCGCAAGATGGCGCCAGTGGATGATGTCACgtttttcttccctttttttgttgttgttcttttggGAATCTGAGCCGTGTCTTCACGAAAAGTCCTGACTTTCGTCCCCCCTGGTCCTGACCGGCCCGTTTCTAAACGTCTTGTGATTTGGTGACTGTACAGTGGAGTTCGGCGGTGGTCAAGCTCGATCTCGGACTTGGTCCACCCCGTCTTTTGCCTGTCCTTCGTAATATCCACATGGGTCACCTGCATGAGCTACTTCACCGAAGCTGCACCCAGCATGACGACATACTTTAAAAATGGACTTGTATGTagaaaaaaaggaacaaaaaataGATCTATATATACACaaggaaaaaaacaaaggaaTAAAAATGATCTTAGTTTACCT
>TCONS_00073593
atggtcctccagaatggtttggtAGTCCTGATGCgccaaatttagccatgaaacgTCCAATACCAAATTGGCAAGTGTTTCAGTTTAAAATATACAGAATCCCTACTTGGTGTCTGACAAGTATATTGTGGTATTAGtactaaatgctgctttgttttgtCTCATCACACTCTGCCAATGCTATCATTCCATTCCCCAACCCCCCTTCGATGGCATCAGGTTTTTCCAGCAGGATATTTTGTTGCTTTCAAATCTTTTAAAGAAACCAGCAGTATGCGAGTTCGTCCGTCTGTCCGTTggtttgagtgtgtttgtttcgTGCACCTGCTGCTGAGCCCAGTCGGCATTCTGCAGAGAAGTTTCGGCAACAAGACTGAGAGATTGCTGTGGAATCTTCACCAAAGATgtcaatttattttcctttggaaGCGTTTAAACAAATTGagagtattttttaaaaaacaaaacggtTATTGGTGCAAAGATTGTTCAGCATTTTACGGTCCTGCCTCGGTTTGagttgtgttgtttttatatttgctaatgtatttttatttgtattctttTTCCAAGATGTGCATTTGAGTTGGATCAGTCAGGACTGGATTTAGGACAGGATTGTCTTTCTCAGTATTCTGGTTCACAGATGGATGTACTGCTGTAAATATATCGTGACCCTCTCTGATACAGTTAGACCCCTTCCGTATGTGCTActaattttcattttgtttttccacTCAAAAAGCAACATGCATTTTCGTTTTTAAGGTCTCGAAATGCCAGGGCGGCCGTGTCCTTGTCCTGTAATGTATTTTCTGACGGACCCATGTGAGCGTTCAGGGATCTGCAGTACTGTAATGATTAATGACTGTAGACTTTGGCTCCTTTTTGCTCTAATGGAAACGATTACGGCCTGAAATTAATGAGCACAGTCGGTTCTACGTAAATGTGGCTCAGCAAAAAGTAGATCTTTCTGCTGGTGACATTTTTCAAGGACGGGAgacttatgaaaaaaatatagtttctttcttttgcatcattttattttcattttcacctctcctgctgtctGTTTTGGGGGGGATTTTGATGGCGCAAGATGGCGCCAGTGGATGATGTCACgtttttcttccctttttttgttgttgttcttttggGAATCTGAGCCGTGTCTTCACGAAAAGTCCTGACTTTCGTCCCCCCTGGTCCTGACCGGCCCGTTTCTAAACGTCTTGTGATTTGGTGACTGTACAGTGGAGTTCGGCGGTGGTCAAGCTCGATCTCGGACTTGGTCCACCCCGTCTTTTGCCTGTCCTTCGTAATATCCACATGGGTCACCTGCATGAGCTACTTCACCGAAGCTGCACCCAGCATGACGACATACTTTAAAAATGGACTTGTATGTagaaaaaaaggaacaaaaaataGATCTATATATACACaaggaaaaaaacaaaggaaTAAAAATGATCTTAGTTTACCT

Function

GO:

id name namespace
GO:0070482 response to oxygen levels biological_process
GO:0036293 response to decreased oxygen levels biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0031638 zymogen activation biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074934 False 2965 lncRNA 0.39 2 45548787 45553378
TCONS_00073593 True 1483 lncRNA 0.41 2 45551068 45553378

Neighbor

gene id symbol gene type direction distance location
XLOC_037402 adarb1b coding upstream 7420 45227028 ~ 45541367 (+)
XLOC_037403 NA coding upstream 287026 45261384 ~ 45261761 (+)
XLOC_037401 NA coding upstream 425797 45112496 ~ 45122990 (+)
XLOC_037400 BX510317.1 coding upstream 484518 45064155 ~ 45064269 (+)
XLOC_037399 NA coding upstream 503796 45039765 ~ 45044991 (+)
XLOC_037405 traf3ip1 coding downstream 52032 45605410 ~ 45667487 (+)
XLOC_037406 asb1 coding downstream 127424 45680802 ~ 45697644 (+)
XLOC_037407 si:dkey-34f9.3 coding downstream 236509 45789887 ~ 45794194 (+)
XLOC_037408 BX897692.2 coding downstream 268091 45821469 ~ 45821585 (+)
XLOC_037409 twist2 coding downstream 285882 45839260 ~ 45843479 (+)
XLOC_037397 BX571855.1 non-coding upstream 616494 44932175 ~ 44932293 (+)
XLOC_037410 NA non-coding downstream 311889 45865267 ~ 45884134 (+)
XLOC_037411 NA non-coding downstream 825331 46378709 ~ 46395404 (+)
XLOC_037412 NA non-coding downstream 861780 46415158 ~ 46431296 (+)
XLOC_037413 NA non-coding downstream 929551 46482929 ~ 46616033 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1786720 NA non-coding NC_048586.1 CM023240.2 20171839 ~ 20175644 (-)
tiger barb (Puntius tetrazona) G72646 NA non-coding NC_056707.1 CM032076.1 22828098 ~ 22891619 (-)