XLOC_037405 (traf3ip1)


Basic Information

Item Value
gene id XLOC_037405
gene name traf3ip1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 45605410 ~ 45667487 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073594
TGGGACAGAAAGCTATCGCCAGGGCAACAGGAGAGTTTAGCCAGCGGAAATCTTCTGCTAGCTGAACGGTAACGGCGATCAATCACAGAATAAACATCTTACATCCGAAATACTGTTTTGGTTTGATGCCATGAACGAATCGGTAGCCAAAAAGACCCAGGAGACTCTGGGGAAAGTGATCAAAAAGCCTCCCCTGACTGAAAAACTGCTCAGCAAACCACCGTTTCGATACCTGCACGACATTTTCAGCgagCTCTCTAGTGATGAAGCTGTTAAACGTGTGTTAGCGGGAGACAAGCTGGATCAGAAGGGCAAGCCCAGCACCTCCAGATCCCAGGACAAGGAGAACAGAGAGGGCAGAGAGCACCACCGAGACCGAGAGGAGAGGAAGGGCATCAAGGAGAGCAGTGGGAGTCGAGAACAGAAAGATCCAGATCAACCCAAAGATCAAGAGAGCAAGAGGGACGACAAGGACCGCAGACGAGATGCTGAGAGGTCTGACAAAGGCCGAGAAAGAGAGCGAACAAAAGACAGAGATCGAGACAAGGACAAGAGCCGCGATCGGGAGAAAGACAAGACTCGAGAGAAAGAGCGGGAACGAGAGAAGGATCGTaacagagagaaggagagagagcgGGATAAAGATCGAGATAAGAAGAAGGAGAGGGAATCTCACAAAGACAGAGAACGGGACAAAGATCGTGAGCGCGAGAAACGGCGGGAGAAAGAGAAGGACAAAGAAAGACCCAGAGAGACTGAGGAGAAACTAAAAGACAGAGGCGACAGAAAG
>TCONS_00073595
GAAAGCTATCGCCAGGGCAACAGGAGAGTTTAGCCAGCGGAAATCTTCTGCTAGCTGAACGGTAACGGCGATCAATCACAGAATAAACATCTTACATCCGAAATACTGTTTTGGTTTGATGCCATGAACGAATCGGTAGCCAAAAAGACCCAGGAGACTCTGGGGAAAGTGATCAAAAAGCCTCCCCTGACTGAAAAACTGCTCAGCAAACCACCGTTTCGATACCTGCACGACATTTTCAGCgagGTAATACGCACTACAGGCTTTATGAAAGGACTTTATGTGGAAGCAGAGATGAAGTCAGATAACGTGAAGGACAAAGACTCGAAAATAGCATTCCTTCAGAAGGCCATTGATGTGGTGATGCTAGTCAGCGGAGAGCCCTTGGCTGCTAAACCTGCTCGGATCGTAGCCGGACACGAACCAGAGAAGACCAATGAGCTGCTGCAGGTCATTGCTAAGTGCTGTCTCAACAAGCTCTCTAGTGATGAAGCTGTTAAACGTGTGTTAGCGGGAGACAAGCTGGATCAGAAGGGCAAGCCCAGCACCTCCAGATCCCAGGACAAGGAGAACAGAGAGGGCAGAGAGCACCACCGAGACCGAGAGGAGAGGAAGGGCATCAAGGAGAGCAGTGGGAGTCGAGAACAGAAAGATCCAGATCAACCCAAAGATCAAGAGAGCAAGAGGGACGACAAGGACCGCAGACGAGATGCTGAGAGGTCTGACAAAGGCCGAGAAAGAGAGCGAACAAAAGACAGAGATCGAGACAAGGACAAGAGCCGCGATCGGGAGAAAGACAAGACTCGAGAGAAAGAGCGGGAACGAGAGAAGGATCGTaacagagagaaggagagagagcgGGATAAAGATCGAGATAAGAAGAAGGAGAGGGAATCTCACAAAGACAGAGAACGGGACAAAGATCGTGAGCGCGAGAAACGGCGGGAGAAAGAGAAGGACAAAGAAAGACCCAGAGAGACTGAGGAGAAACTAAAAGACAGAGGCGACAGAAAGATCAAGGCAGCGGAGGAGATCAGCAAGTCAAAACCTCAGCCGGAGGTTGCAAGTAAAACACACCAAGCTGAAACTGAAGAGGCTGAGAGTCCTTCCCGGATCCCAAGGCCTTCATCAGCTAAAGGACAGCGGCGGAAGCCCAAAACAGGAGGTCAAGGTACTGAACAAGACGAGACAGAGAGTGAAGGAGaAGCAGAAGCTCCTTCAGCAGAGAAACCAATTCCTCTTGAGAATGGGGACGTTACAGATTCTGCCACTCTGCAAACAACACTCAGTAGAAGATTACCACGGCCAAGCAGTGCTCGACCAGCAGCTCCTCGTGTGAAGAGACAAGAGAGCTACACTGATGCCACTCCAGCTGAGAGGCTTGGCAGTGGCAAGACCCCTGCATCCGTCATTCTGGATGGCAAGAAGCTCTctgaagatgaggatgatgaagatgggcagtttgtggtggaggagGCAGCTCCACCTCCATCTGATGTACCTGAAGTGGAGAGTAATTCACTTGAGTTGCAAGGCGATGACAAACATGGTGGACTTGTGAAAAAAATCTTGGAGACAAAGAAAGACTATGAATCATCTCCATCCTCCAAGTCAAAAGAGCAGGACCGGTCGCTGGTGTCGGAGGCGTCTCGTAAGAAGGAGCGTGAACTGGTGGCAAGGGAGATCGAGCGTCTGCGTTCCTCCATACAGACGGTGTGCCGAAGCGCTCTGCCTCTGGGAAAGATCATGGACTACATTCAGGAGGATATGGACTCCATGCAGAACGAACTGCAGAGCTGGCGAAGAGAGAACAAGGAGAATGCACAGGCTCTGCTGCAGGAACAGAGAATCACAGACGGTGTAGTGGAGCCTCTTAAAGTGGAGCTCGCCGAACTGGAGCAGCTAATCAAAGACCAACAGGACAAGATCTGCGCAGTCAAGTCCAACATCCTGAAAAACGAGGAGAAGATCCAGAAGATGGTGTCCAGCATCAGCTTCTCCTCGCAAACGTGAACACAAGACACTTCCCCAATGAAAGCTGAAGCACTGAGCTCTTGTTAACAGACGTGGAGAGACAGCAGAAGGTTACAGGTACAGTCAAGAGTCAAACCTCCACCAAAACCCTTCATGTAAGGTGCCTTCTGTAAGACCGGGAGATCTGTTTGCGCTGGTCCAAACTCACGTCTGCAGTAGATTTGCACTCGTCACTTGCTTGAGAGATAAATGCGTGTGTGGTCACTA
>TCONS_00073597
ATGAACGAATCGGTAGCCAAAAAGACCCAGGAGACTCTGGGGAAAGTGATCAAAAAGCCTCCCCTGACTGAAAAACTGCTCAGCAAACCACCGTTTCGATACCTGCACGACATTTTCAGCgagGTAATACGCACTACAGGCTTTATGAAAGGACTTTATGTGGAAGCAGAGATGAAGTCAGATAACGTGAAGGACAAAGACTCGAAAATAGCATTCCTTCAGAAGGCCATTGATGTGGTGATGCTAGTCAGCGGAGAGCCCTTGGCTGCTAAACCTGCTCGGATCGTAGCCGGACACGAACCAGAGAAGACCAATGAGCTGCTGCAGGTCATTGCTAAGTGCTGTCTCAACAAGCTCTCTAGTGATGAAGCTGTTAAACGTGTGTTAGCGGGAGACAAGCTGGATCAGAAGGGCAAGCCCAGCACCTCCAGATCCCAGGACAAGGAGAACAGAGAGGGCAGAGAGCACCACCGAGACCGAGAGGAGAGGAAGGGCATCAAGGAGAGCAGTGGGAGTCGAGAACAGAAAGATCCAGATCAACCCAAAGATCAAGAGAGCAAGAGGGACGACAAGGACCGCAGACGAGATGCTGAGAGGTCTGACAAAGGCCGAGAAAGAGAGCGAACAAAAGACAGAGATCGAGACAAGGACAAGAGCCGCGATCGGGAGAAAGACAAGACTCGAGAGAAAGAGCGGGAACGAGAGAAGGATCGTaacagagagaaggagagagagcgGGATAAAGATCGAGATAAGAAGAAGGAGAGGGAATCTCACAAAGACAGAGAACGGGACAAAGATCGTGAGCGCGAGAAACGGCGGGAGAAAGAGAAGGACAAAGAAAGACCCAGAGAGACTGAGGAGAAACTAAAAGACAGAGGCGACAGAAAGATCAAGGCAGCGGAGGAGATCAGCAAGTCAAAACCTCAGCCGGAGGTTGCAAGTAAAACACACCAAGCTGAAACTGAAGAGGCTGAGGGCGGTGAACTGGAGCCTTCAGATCTCACTGAAATCCAGGCTGAGAGTCCTTCCCGGATCCCAAGGCCTTCATCAGCTAAAGGACAGCGGCGGAAGCCCAAAACAGGAGGTCAAGGTACTGAACAAGaAGCAGAAGCTCCTTCAGCAGAGAAACCAATTCCTCTTGAGAATGGGGACGTTACAGATTCTGCCACTCTGCAAACAACACTCAGTAGAAGATTACCACGGCCAAGCAGTGCTCGACCAGCAGCTCCTCGTGTGAAGAGACAAGAGAGCTACACTGATGCCACTCCAGCTGAGAGGCTTGGCAGTGGCAAGACCCCTGCATCCGTCATTCTGGATGGCAAGAAGCTCTctgaagatgaggatgatgaagatgggcagtttgtggtggaggagGCAGCTCCACCTCCATCTGATGTACCTGAAGTGGAGAGTAATTCACTTGAGTTGCAAGGCGATGACAAACATGGTGGACTTGTGAAAAAAATCTTGGAGACAAAGAAAGACTATGAATCATCTCCATCCTCCAAGTCAAAAGAGCAGGACCGGTCGCTGGTGTCGGAGGCGTCTCGTAAGAAGGAGCGTGAACTGGTGGCAAGGGAGATCGAGCGTCTGCGTTCCTCCATACAGACGGTGTGCCGAAGCGCTCTGCCTCTGGGAAAGATCATGGACTACATTCAGGAGGATATGGACTCCATGCAGAACGAACTGCAGAGCTGGCGAAGAGAGAACAAGGAGAATGCACAGGCTCTGCTGCAGGAACAGAGAATCACAGACGGTGTAGTGGAGCCTCTTAAAGTGGAGCTCGCCGAACTGGAGCAGCTAATCAAAGACCAACAGGACAAGATCTGCGCAGTCAAGTCCAACATCCTGAAAAACGAGGAGAAGATCCAGAAGATGGTGTCCAGCATCAGCTTCTCCTCGCAAACGTGA
>TCONS_00073596
ATGAACGAATCGGTAGCCAAAAAGACCCAGGAGACTCTGGGGAAAGTGATCAAAAAGCCTCCCCTGACTGAAAAACTGCTCAGCAAACCACCGTTTCGATACCTGCACGACATTTTCAGCgagGTAATACGCACTACAGGCTTTATGAAAGGACTTTATGTGGAAGCAGAGATGAAGTCAGATAACGTGAAGGACAAAGACTCGAAAATAGCATTCCTTCAGAAGGCCATTGATGTGGTGATGCTAGTCAGCGGAGAGCCCTTGGCTGCTAAACCTGCTCGGATCGTAGCCGGACACGAACCAGAGAAGACCAATGAGCTGCTGCAGGTCATTGCTAAGTGCTGTCTCAACAAGCTCTCTAGTGATGAAGCTGTTAAACGTGTGTTAGCGGGAGACAAGCTGGATCAGAAGGGCAAGCCCAGCACCTCCAGATCCCAGGACAAGGAGAACAGAGAGGGCAGAGAGCACCACCGAGACCGAGAGGAGAGGAAGGGCATCAAGGAGAGCAGTGGGAGTCGAGAACAGAAAGATCCAGATCAACCCAAAGATCAAGAGAGCAAGAGGGACGACAAGGACCGCAGACGAGATGCTGAGAGGTCTGACAAAGGCCGAGAAAGAGAGCGAACAAAAGACAGAGATCGAGACAAGGACAAGAGCCGCGATCGGGAGAAAGACAAGACTCGAGAGAAAGAGCGGGAACGAGAGAAGGATCGTaacagagagaaggagagagagcgGGATAAAGATCGAGATAAGAAGAAGGAGAGGGAATCTCACAAAGACAGAGAACGGGACAAAGATCGTGAGCGCGAGAAACGGCGGGAGAAAGAGAAGGACAAAGAAAGACCCAGAGAGACTGAGGAGAAACTAAAAGACAGAGGCGACAGAAAGATCAAGGCAGCGGAGGAGATCAGCAAGTCAAAACCTCAGCCGGAGGTTGCAAGTAAAACACACCAAGCTGAAACTGAAGAGGCTGAGGGCGGTGAACTGGAGCCTTCAGATCTCACTGAAATCCAGGCTGAGAGTCCTTCCCGGATCCCAAGGCCTTCATCAGCTAAAGGACAGCGGCGGAAGCCCAAAACAGGAGGTCAAGGTACTGAACAAGACGAGACAGAGAGTGAAGGAGaAGCAGAAGCTCCTTCAGCAGAGAAACCAATTCCTCTTGAGAATGGGGACGTTACAGATTCTGCCACTCTGCAAACAACACTCAGTAGAAGATTACCACGGCCAAGCAGTGCTCGACCAGCAGCTCCTCGTGTGAAGAGACAAGAGAGCTACACTGATGCCACTCCAGCTGAGAGGCTTGGCAGTGGCAAGACCCCTGCATCCGTCATTCTGGATGGCAAGAAGCTCTctgaagatgaggatgatgaagatgggcagtttgtggtggaggagGCAGCTCCACCTCCATCTGATGTACCTGAAGTGGAGAGTAATTCACTTGAGTTGCAAGGCGATGACAAACATGGTGGACTTGTGAAAAAAATCTTGGAGACAAAGAAAGACTATGAATCATCTCCATCCTCCAAGTCAAAAGAGCAGGACCGGTCGCTGGTGTCGGAGGCGTCTCGTAAGAAGGAGCGTGAACTGGTGGCAAGGGAGATCGAGCGTCTGCGTTCCTCCATACAGACGGTGTGCCGAAGCGCTCTGCCTCTGGGAAAGATCATGGACTACATTCAGGAGGATATGGACTCCATGCAGAACGAACTGCAGAGCTGGCGAAGAGAGAACAAGGAGAATGCACAGGCTCTGCTGCAGGAACAGAGAATCACAGACGGTGTAGTGGAGCCTCTTAAAGTGGAGCTCGCCGAACTGGAGCAGCTAATCAAAGACCAACAGGACAAGATCTGCGCAGTCAAGTCCAACATCCTGAAAAACGAGGAGAAGATCCAGAAGATGGTGTCCAGCATCAGCTTCTCCTCGCAAACGTGA

Function

symbol description
traf3ip1 Predicted to enable microtubule binding activity. Involved in regulation of microtubule cytoskeleton organization. Acts upstream of or within several processes, including animal organ development; cerebrospinal fluid circulation; and regulation of microtubule polymerization. Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Predicted to be part of intraciliary transport particle B. Predicted to be active in axoneme; centrosome; and ciliary basal body. Human ortholog(s) of this gene implicated in Senior-Loken syndrome. Orthologous to human TRAF3IP1 (TRAF3 interacting protein 1).

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0043010 camera-type eye development biological_process
GO:0048793 pronephros development biological_process
GO:0031113 regulation of microtubule polymerization biological_process
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0042995 cell projection cellular_component
GO:0036064 ciliary basal body cellular_component
GO:0030992 intraciliary transport particle B cellular_component
GO:0005813 centrosome cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005930 axoneme cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-1146 Predicted to enable microtubule binding activity. Involved in regulation of microtubule cytoskeleton organization. Acts upstream of or within several processes, including animal organ development; cerebrospinal fluid circulation; and regulation of microtubule polymerization. Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Predicted to be part of intraciliary transport particle B. Predicted to be active in axoneme; centrosome; and ciliary basal body. Human ortholog(s) of this gene implicated in Senior-Loken syndrome. Orthologous to human TRAF3IP1 (TRAF3 interacting protein 1).

Ensembl:

ensembl_id ENSDARG00000010300

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073594 False 790 mRNA 0.50 3 45605410 45623647
TCONS_00073595 False 2241 mRNA 0.50 15 45605417 45667487
TCONS_00073597 False 1914 mRNA 0.51 16 45605540 45667259
TCONS_00073596 True 1935 mRNA 0.51 17 45605540 45667259

Neighbor

gene id symbol gene type direction distance location
XLOC_037404 NA coding upstream 52032 45548787 ~ 45553378 (+)
XLOC_037402 adarb1b coding upstream 64043 45227028 ~ 45541367 (+)
XLOC_037403 NA coding upstream 343649 45261384 ~ 45261761 (+)
XLOC_037401 NA coding upstream 482420 45112496 ~ 45122990 (+)
XLOC_037400 BX510317.1 coding upstream 541141 45064155 ~ 45064269 (+)
XLOC_037406 asb1 coding downstream 13315 45680802 ~ 45697644 (+)
XLOC_037407 si:dkey-34f9.3 coding downstream 122400 45789887 ~ 45794194 (+)
XLOC_037408 BX897692.2 coding downstream 153982 45821469 ~ 45821585 (+)
XLOC_037409 twist2 coding downstream 171773 45839260 ~ 45843479 (+)
XLOC_037410 NA coding downstream 197780 45865267 ~ 45884134 (+)
XLOC_037399 NA non-coding upstream 560419 45039765 ~ 45044991 (+)
XLOC_037411 NA non-coding downstream 711222 46378709 ~ 46395404 (+)
XLOC_037412 NA non-coding downstream 747671 46415158 ~ 46431296 (+)
XLOC_037413 NA non-coding downstream 815442 46482929 ~ 46616033 (+)

Expression


Co-expression Network