mrps5 (LOC106608355)


Basic Information

Item Value
gene id mrps5
gene name LOC106608355
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 32448786 ~ 32474652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960218.1
AATCATATTCATTATTTACAGGCACATCTCAGCCTACCTGTTATGCTATTCAGGACCTTTCACAACATCAAGATGGCGGCGTCCATACGGGTGTGCTGTGCCCTCCGAATTACGCTGGGAGGGGTAGCACCACTTCGGACAGCAGGGGgcgccctgcctctctctcacctaGCCAGACCCACTGCCTCTCTATGTACTGCTACTCCACCAGCCCCTGCTACCTGGATACAGACCAGACATAGCAGTTTCTTCAACAAACTGACAGCAGAGGAGCTTTGGAGGGGAGTTCTGGCAGAGACTGGTGCCGGTGCTCGAAAGGGCCGAGGGAAGAGGACCAAGAGGAAGATGAAGAAGGATCTGAACCGAGGCCAGAATATCGGAGAGGggcgCGGGGGGTTCCTGTGGCCGGGGTTGAACTCTCCCATCCTGAAGAGCGGGACCATACAGATCATGTCTCGCCGCGGGGAGTCAGAGCAACAGGAACTGCAGGCAGAGCTTCTGCGACAGCGCGACGAATGGGATCGCAGGAGGAAGATGAGGGTGAAGAGGGAGCGAGGGTGGACTGGCAACTCCTGGGGCGGCATCAGTCTGGGGCCCCCTGACCCTGGACCCAACGGAGAGACTTACGATGACTTTGACTCCCGAGTGATCGAGGTGAAGAGCGTGTTCAACATGACAGCCAAAGAGGGCCGGAAGAGGTCCATCAGCTGCCTGGTAGCTGTTGGCAATGGGAACGGGGCAGCAGGTTTTGCCTTGGGTAAGGCGGCAGACCGTCAAACTGCACTGAGAAAGGCAAAGAACCGAGCAGTGCACTATTTGTACTACATTGAGAGATACAACGACCACACTATTTACCATGATATCAATTCCACTTTCAAGAGGACTACCCTACTCATGAAGAAACAGCATAAAGgttacgGACTACACTGTCACCGTGCGGTCATCACCATCTGTAAGCTGATTGGTATAGAGGACATGTACGCGAAGGTAGAGGGCTCCGTCAACCTGCTTAACATCACCAGGGCTCTATTCACCGGACTGGCTAATCAGGAGACCCACCAGTCCCTGGCTGAAAAGAAGCAGCTCCACGTGGTAGAGTTTCAGCCGGAGCGCGGGCCCCTACCCCTCATCGTGGCCACCCCTAAGAAGGGTGTGCGACCCGACCCTGAACCTGAGGAGGAGATCCCCAACACGCGGCTCAACTGGGACGACGTCCGTGCCTCTCAGGGCATGAAACGCTCTGTCTGGGCCGGGCTCAAGAGGACCATCTggtgaccacaacacaaccataacagTAGACCCGCCCTATGGACCGGTTGAGATAGGTTGGGGCGATGTTTGGCTGGGTTCAGGTTGTTGGGTTGAGAGTGTTACTAGGAAGGAAGCCTGTCTCTCAGGCATCATACGACTCGTAAGATTGGACCCCAGTGGAAATAACATCATCAAACCGAGACATTTACTGTATGCATATGTATAGCATCATGACTTAGTATTTCACCAAAGGTTGTGAAATACTCCCAAAAGAGTTTCACATCTAAACAGTTTAATTCAACCAGTGGATCTTTTAGGCTCTGTAAGAATAATGTTGTTTCAAAATCACTTGTTCATGTGACATTGCTGAAGATCTGAGCTGTCTAATTAAAAATTGAAACTCTCCAAAA

Function

NR:

description
28S ribosomal protein S5, mitochondrial

GO: NA

KEGG:

id description
K02988 RP-S5, MRPS5, rpsE; small subunit ribosomal protein S5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960218.1 True 1661 mRNA 0.53 11 32448786 32474652

Neighbor

gene id symbol gene type direction distance location
LOC110502597 LOC106608325 coding upstream 472750 31969957 ~ 31976036 (+)
LOC110503062 arhgef33 coding upstream 557253 31871734 ~ 31891533 (+)
morn2 morn2 coding upstream 579043 31866319 ~ 31869743 (+)
LOC110502586 LOC100196543 coding upstream 729836 31653358 ~ 31718950 (+)
LOC110502584 LOC106608814 coding upstream 824602 31620398 ~ 31624184 (+)
LOC110502602 LOC106608363 coding downstream 14615 32489267 ~ 32530254 (+)
LOC110502603 LOC106608383 coding downstream 97794 32572446 ~ 32646173 (+)
LOC118943948 NA coding downstream 100189 32574841 ~ 32574893 (+)
LOC110502609 ppa1 coding downstream 508820 32983472 ~ 33000172 (+)
LOC110502610 LOC106608453 coding downstream 525778 33000430 ~ 33019500 (+)
G1855703 NA non-coding upstream 643 32446783 ~ 32448143 (+)
G1855684 NA non-coding upstream 34107 32414375 ~ 32414679 (+)
G1855673 NA non-coding upstream 50468 32398102 ~ 32398318 (+)
G1855660 NA non-coding upstream 66218 32382369 ~ 32382568 (+)
G1855609 NA non-coding upstream 102641 32345876 ~ 32346145 (+)
G1855717 NA non-coding downstream 8398 32483050 ~ 32483821 (+)
G1855718 NA non-coding downstream 9523 32484175 ~ 32484491 (+)
G1855719 NA non-coding downstream 9961 32484613 ~ 32485039 (+)
G1855720 NA non-coding downstream 11095 32485747 ~ 32486008 (+)
G1853162 rps27a other upstream 1616343 30826585 ~ 30834692 (+)
G1853092 NA other upstream 1642332 30805550 ~ 30806454 (+)
LOC110502560 LOC106607954 other upstream 1795570 30547124 ~ 30659333 (+)
G1855733 NA other downstream 33586 32508238 ~ 32509474 (+)
G1855723 NA other downstream 44275 32518927 ~ 32519677 (+)
G1856094 LOC106577218 other downstream 463255 32937907 ~ 32942047 (+)
wnt8b LOC106608511 other downstream 753181 33227748 ~ 33236137 (+)

Expression


Co-expression Network