LOC110502606 (LOC102780737)


Basic Information

Item Value
gene id LOC110502606
gene name LOC102780737
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 32937921 ~ 32944288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580778.2
CAAGTATTCAGGTCGCACGGCTTCCATTCAGGCGTTTGGTTGGCCGGCATCGGGTCCTTCCTCCTTTTCCTCGTCCCTGAGAGGCTGATGTCAAGATGAACGACACAGTGACAGTCAGAACCCGGAAGTTCATGACAAACCGGCTGCTTCAGAGGAAGCAAATGGTTGTCGATGTCCTCCATCCGGGCAAAGCCACAGTCCCCAAGACTGAGATCCGGGAGAAGCTGGCCAAAATGTACAAGACCACCCCTGACGTGGTGTTCGTCTTCGGCTTCAGGACCCAGTTTGGTGGCGGCAAGACGACGGGCTTCGCCATGGTCTACGACTCTCTCGACTACGCTAAGAAAAACGAGCCCAAGCACAGACTGGCCAGGCACGGTCTCTATGAGAAGAAGAAGTCCTCCAGAAAACAGCGCAAGGAACGCAAGAACAGAATGAAGAAAGTACGAGGCACCAAGAAAGCCAGTGTGGGCGCTGCTGGCAAAAAGAAGAAATGAGGTGTCTGTTACAGTGAGCCTGGAGAATCAGGGATGTTCCTCGTGCTCAAGATGTTCTTGTATATTGTCATCGAATAAAAAAAACTTTGGAAAAAAAGTC
>XM_021580779.2
CAAGTATTCAGGTCGCACGGCTTCCATTCAGGCGTTTGGTTGGCCGGCATCGGGTCCTTCCTCCTTTTCCTCGTCCCTGAGAGGCTGATGTCAAGATGAACGACACAGTGACAGTCAGAACCCGGAAGTTCATGACAAACCGGCTGCTTCAGAGGAAGCAAATGGTTGTCGATGTCCTCCATCCGGGCAAAGCCACAGTCCCCAAGACTGAGATCCGGGAGAAGCTGGCCAAAATGTACAAGACCACCCCTGACGTGGTGTTCGTCTTCGGCTTCAGGACCCAGTTTGGTGGCGGCAAGACGACGGGCTTCGCCATGGTCTACGACTCTCTCGACTACGCTAAGAAAAACGAGCCCAAGCACAGACTGGCCAGGCACGGTCTCTATGAGAAGAAGAAGTCCTCCAGAAAACAGCGCAAGGAACGCAAGAACAGAATGAAGAAAGTACGAGGCACCAAGAAAGCCAGTGTGGGCGCTGCTGGCAAAAAGAAGTGAGCCTGGAGAATCAGGGATGTTCCTCGTGCTCAAGATGTTCTTGTATATTGTCATCGAATAAAAAAAACTTTGGAAAAAAAGTC
>XM_021580780.2
CAAGTATTCAGGTCGCACGGCTTCCATTCAGGCGTTTGGTTGGCCGGCATCGGGTCCTTCCTCCTTTTCCTCGTCCCTGAGAGGCTGATGTCAAGATGAACGACACAGTGACAGTCAGAACCCGGAAGTTCATGACAAACCGGCTGCTTCAGAGGAAGCAAATGGTTGTCGATGTCCTCCATCCGGGCAAAGCCACAGTCCCCAAGACTGAGATCCGGGAGAAGCTGGCCAAAATGTACAAGACCACCCCTGACGTGGTGTTCGTCTTCGGCTTCAGGACCCAGTTTGGTGGCGGCAAGACGACGGGCTTCGCCATGGTCTACGACTCTCTCGACTACGCTAAGAAAAACGAGCCCAAGCACAGACTGGCCAGGCACGGTCTCTATGAGAAGAAGAAGTCCTCCAGAAAACAGCGCAAGGAACGCAAGAACAGAATGAAGAAAGTACGAGGCACCAAGAAAGCCAGTGTGGGCGCTGCTGGCAAAAAGAAATGAGGTGTCTGTTACAGTGAGCCTGGAGAATCAGGGATGTTCCTCGTGCTCAAGATGTTCTTGTATATTGTCATCGAATAAAAAAAACTTTGGAAAAAAAGTC
>XM_021580781.2
AAGTATTCAGGTCGCACGGCTTCCATTCAGGCGTTTGGTTGGCCGGCATCGGGTCCTTCCTCCTTTTCCTCGTCCCTGAGAGGCTGATGTCAAGATGAACGACACAGTGACAGTCAGAACCCGGAAGTTCATGACAAACCGGCTGCTTCAGAGGAAGCAAATGGTTGTCGATGTCCTCCATCCGGGCAAAGCCACAGTCCCCAAGACTGAGATCCGGGAGAAGCTGGCCAAAATGTACAAGACCACCCCTGACGTGGTGTTCGTCTTCGGCTTCAGGACCCAGTTTGGTGGCGGCAAGACGACGGGCTTCGCCATGGTCTACGACTCTCTCGACTACGCTAAGAAAAACGAGCCCAAGCACAGACTGGCCAGGCACGGTCTCTATGAGAAGAAGAAGTCCTCCAGAAAACAGCGCAAGGAACGCAAGAACAGAATGAAGAAAGTACGAGGCACCAAGAAAGCCAGTGTGGGCGCTGCTGGCAAAAAGTGAGCCTGGAGAATCAGGGATGTTCCTCGTGCTCAAGATGTTCTTGTATATTGTCATCGAATAAAAAAAACTTTGGAAAAAAA

Function

NR:

description
PREDICTED: 40S ribosomal protein S24-like isoform X1

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02974 RP-S24e, RPS24; small subunit ribosomal protein S24e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580778.2 False 597 mRNA 0.51 7 32937921 32944288
XM_021580779.2 False 577 mRNA 0.52 6 32937921 32944288
XM_021580780.2 False 594 mRNA 0.52 6 32937921 32944288
XM_021580781.2 True 570 mRNA 0.52 5 32937924 32944287

Neighbor

gene id symbol gene type direction distance location
LOC110502604 LOC106608394 coding downstream 79728 32653335 ~ 32858193 (-)
LOC110502600 LOC106608331 coding downstream 698623 32036219 ~ 32239298 (-)
LOC110502599 NA coding downstream 953353 31982805 ~ 31984568 (-)
LOC110502596 LOC106608247 coding downstream 978475 31891979 ~ 31959446 (-)
LOC110503102 NA coding downstream 1071985 31855932 ~ 31865936 (-)
LOC110502608 eif4ebp2 coding upstream 25229 32969517 ~ 32975875 (-)
LOC110503103 LOC106608472 coding upstream 94382 33038670 ~ 33141219 (-)
dnajb12a LOC106608494 coding upstream 209585 33153873 ~ 33166327 (-)
LOC110502617 LOC106608514 coding upstream 342553 33286841 ~ 33330278 (-)
hhat hhat coding upstream 497670 33441958 ~ 33550430 (-)
G1856326 NA non-coding downstream 11469 32926199 ~ 32926452 (-)
G1856142 NA non-coding downstream 346118 32586244 ~ 32591803 (-)
G1855826 NA non-coding downstream 393110 32542445 ~ 32544811 (-)
G1855828 NA non-coding downstream 417179 32519780 ~ 32520742 (-)
G1855818 NA non-coding downstream 432765 32504949 ~ 32505156 (-)
G1856330 NA non-coding upstream 1792 32946080 ~ 32946365 (-)
G1856370 NA non-coding upstream 72407 33016695 ~ 33016978 (-)
G1856373 NA non-coding upstream 75228 33019516 ~ 33021460 (-)
G1856383 NA non-coding upstream 86937 33031225 ~ 33031426 (-)
G1856217 NA other downstream 291781 32637425 ~ 32646140 (-)
G1855822 LOC106608363 other downstream 421640 32515749 ~ 32516281 (-)
G1855821 NA other downstream 422513 32515066 ~ 32515408 (-)
G1855326 NA other downstream 956588 31979997 ~ 31981333 (-)
G1854905 NA other downstream 1719750 31217597 ~ 31218171 (-)
LOC110502621 LOC106608559 other upstream 651870 33590457 ~ 33601995 (-)
kcnma1a LOC106613356 other upstream 1232769 34177056 ~ 34469529 (-)
G1858519 NA other upstream 1876488 34820776 ~ 34821565 (-)
G1858575 LOC106613168 other upstream 1895612 34839900 ~ 34841662 (-)
G1858636 NA other upstream 1992401 34936689 ~ 34968861 (-)

Expression


Co-expression Network