XLOC_037406 (asb1)


Basic Information

Item Value
gene id XLOC_037406
gene name asb1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 45680802 ~ 45697644 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073598
AGTGACGCAGCCGTGAGTCTGTTCAGCTGCTAAAAACAGCATCGAGTATTTTATCGAGTTATTGTGGCTTACAGAAGATATTACTTTAGAAGTAGAAGCACAGGACATGATGACTGATAGTGAAAATGTTGCAGTTGAAGGCTGTGGTGCAGCTGGCCGTAACCTGACACACTGGCTCCAGGAGCAGTTTGGTAACAGGCCTCTGGAACAGAGTGAGGACACACGTCTACACAACGCTGCTCATTTGGGAGATCTGGACACTCTCAGGACCCTCCTACAAGAAGACTGCTTCAGACAGCGGATTAATCAGAAGTTGATCTGGTCATGTGGTTTGCTGCCTTGCACACCCCTGCGCATTGCAGCCATGATGGGTCGCAGCGACTGTGTGGCCTTCCTGATCTCTCAGGGAGCTGATGTGGACCTAGTGGACGTGAAAGGTCAGACTGCTCTGTTCATGGCTGTGGTTAACGGACATCTTGACTGTGTGAAGATCCTTCTGGAAGCTGGTGCTGATCCTAATGGCAGCAGGCACCACCGGAGCACACCTATATACCATGCTGCACAAGTGGGTCGAGCGGACATCATGCTGGAGCTAATCAGGTTCCATGCTGATGTTGACATTGACCACCGACTGGAGCAGAAGGTTATATTCCGCACTCGTACTTTGACAACTCTGGCAGCCTGTCCACTGTACATCAGCGCCGCGTACCACCATCTCCCCTGCTTCCGGATGCTTCTGAAAGCAGGCGCCAATCCTGACTACAACTACAATGGGCCCGTGAACAGGGACGCGTTGGTCAAGGGCCGGGCCTCCTGTATGCTGGATGCGGTTCTCAGACTGGGATGTGATCCAGTATTTGTTAGCTTGCTGCTGGATCACGGTGCTGACCCACATGTAGTGCACTGGGACGAGCTCGACCCTGACACAATGATTCGGTTAAAGGTCAACGTCGAAGCCCTCTGTGTCTACCAGGAGGCCAGAAGAAACCCTCAGCGACTGATGAACCTGTGCCGCATTACTATCCGGAAGATCTTTGGCAAGAAGCATATGTCGTGCATCTCTTCTCTTCCACTACCAGACACCATCATTACATTTATCCTTCACAATGACTGATGTAGCTCTGCTTCTGCCTGTCCGGATGGTCGATTAAATCAAGGTTGTTGTTGACACTCCACAACATTATTTCAATGGAAACCAACGGCATCTGTGATGGCAAGGTAACacatttttgatttgattttgatcaCATTTTGCTGATTTTGAAATGGAATAATTTGTGAACCAAatgcttaaagggttagttcacccaaaaa

Function

symbol description
asb1 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Predicted to be part of ubiquitin ligase complex. Orthologous to human ASB1 (ankyrin repeat and SOCS box containing 1).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040718-234 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Predicted to be part of ubiquitin ligase complex. Orthologous to human ASB1 (ankyrin repeat and SOCS box containing 1).

Ensembl:

ensembl_id ENSDARG00000026635

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073598 True 1314 mRNA 0.49 5 45680802 45697644

Neighbor

gene id symbol gene type direction distance location
XLOC_037405 traf3ip1 coding upstream 13315 45605410 ~ 45667487 (+)
XLOC_037404 NA coding upstream 127424 45548787 ~ 45553378 (+)
XLOC_037402 adarb1b coding upstream 139435 45227028 ~ 45541367 (+)
XLOC_037403 NA coding upstream 419041 45261384 ~ 45261761 (+)
XLOC_037401 NA coding upstream 557812 45112496 ~ 45122990 (+)
XLOC_037407 si:dkey-34f9.3 coding downstream 92243 45789887 ~ 45794194 (+)
XLOC_037408 BX897692.2 coding downstream 123825 45821469 ~ 45821585 (+)
XLOC_037409 twist2 coding downstream 141616 45839260 ~ 45843479 (+)
XLOC_037410 NA coding downstream 167623 45865267 ~ 45884134 (+)
XLOC_037411 NA coding downstream 681065 46378709 ~ 46395404 (+)
XLOC_037400 BX510317.1 non-coding upstream 616533 45064155 ~ 45064269 (+)
XLOC_037399 NA non-coding upstream 635811 45039765 ~ 45044991 (+)
XLOC_037412 NA non-coding downstream 717514 46415158 ~ 46431296 (+)
XLOC_037413 NA non-coding downstream 785285 46482929 ~ 46616033 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_14380226_14386430 ASB1 coding CI01000009 null 14380226 ~ 14386866 (+)