LOC110502626 (LOC106608577)


Basic Information

Item Value
gene id LOC110502626
gene name LOC106608577
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 33657488 ~ 33663402 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960266.1
ggtagaccgCGATAGAGAGAGGACGCGCGCGTTGGCAGGCAGTCAAGCCTACAGCTGATTCAATACATTTTCAGCACTATGGACAGTTCCATTTTGCAGCGCGAGCGGACAGAGGGGATATAAAAGATAGGAGCAGCGCTACTTAGCATACCAACACCGCTGAGACAACTGAGGCAACATGAGCCACCAAATTGAGTATCGGTCGGGTTCTCCACATAGAAGAGCTCAAGATGACTATTCCCGCTATCAACACAAACTGACCGGATCCCCCTCGGCGTCCAGGACCGTTATAGGTTTTGGGTCGGCTACCGCATTTATGAACAGAGGATATGCGACGACGCCGAAGAGCGAATTCGGATCGGTTACAAGATCGGATATCTTTTTAGATTCATCAAACACGTTTACCGGGGTGTTGACGAAAATTAATGAGAAAGAACTGCTCCATGGGCTGAACGGCCGTTTCACCGGGTTCATCGAGAAGGTGCGTCATTTGGAGCACCAAAATGAATTGCTCGAGAGGGAAATCGAGGAAATCAAACAGAAGGCACAGTCCCCCGCATCTCTGGCACAGGAGCACGAGTCGGAGCTTATGGATCTGAGGAAACTAGTGCATGACATCACCCTTCAGAAGCGTCAGATCGTGATAGAACATCAGAACCTGGAGGAAGACTTCCTCACCTTGAGAGACAAATACGACCAGGAGGCTCGTGAACGCTCGGATGCAGAGAAAGGCATCCTGGTGCTGAAAAAGGACGCCAACGACGCATACCTGGCAAAACTTCAGCTGGACAAGAAAGCGCAATCTCTGGTGGACGAGATTCACTTCCTGAAGAAAAACCATGAGGACGAGGTGTTGGAGATGGTAGCCCAGATCCACGAGTCTCAGGTGACGGTCGAGGAGCATGCCTTTGCAAAACTCGATATCACTGCGGCTCTCCGGGACATCCGTGCACAGTTGGAAGGTCACGCCGCCTCCAACATCCTTGAGGTCGGGGAGAGTTTCCGTGTCCAGTTCACAAAGTTGACAAAAGCggcagagagcaacagagaggcgCTGAAGGCAACACAGCAGGAGATCCAGGAGAATAGGAGGCGCTTCCAAGGGAAGAACATTGAACTGGACTGCGCGAAAGGAACAAGAGAGGCCCTGGAAAAACAACTACATGAGCTGGAGGAGCGTCACTATTCGGAAATGATTAATTACCAGGACACTGTCAGGCAGCTGGAGAATGAGCTGACTAATGCTAAACTAGATATGTCTGGCCACCTGAGAGAGTACCAGGACCTGCTGAATGTCAAAATGGCTTTGGATGTGGAGATTCTCTCTTACAGGAAACTCCTGGAGGGTGAGGAGTTCCATCTGTCCACCATCTCTGACACCCACATCTCCATGCCCTACATCTACCGCCAGTCCCCTGTCTACACCCTGTCTTCCCTGGCCCGGCAGGGAGGGCCCACACGCAGGTCTGAGCCCCAGTACAAGTTTGTAGAGGAGATCATCACTGAGACCACCAGAGAGGTGGAGTCCGAGTTTGAGGAGACAGGCtctgaggagacaggagagggagagaaggagggagaggagagtgacaaagctgagaggaggggtaaggaagaggaggatgaggagaaagTGGAAGATTTAGGTAAAGTGGATCTTAAAGTGGAGGCcccagagaaagagggggaacaGGAGGAAGAGTCTAAGGGCCAGCAGATAGAAACATCAGCAGAGGTTGAGGTAAATGGAGATGGAGTTAACCCTAGCAAGGGAGAAaatggagaggaaggagatgaCAAAGGAGAGGAGGACATTGACACAGGTGACAATACACAAAGTGAAGTCAAATCAGCTAAGGCCACCAgtgaggaagagaaggaaaaaCTGGACACAACAGAGGAGATAGACGGTGAGATTAAAGATGTGGGGGAGCCATTAGAAAACGATAACACCCCAAAACATGACAAGTCCCTGCCAGAGGTTCCCATGAAGGGTGACATCTCCATAGAACCCAAAACGTCAGAGTCAGAGGATATTCAAACAGAAAGTTCAATAAAGGGTGAACCACAGGTCCCCACAGAGGACATTTCCAAAGAGCCCAAAAAGGTGTCAGAGGAGAGCAAAAAAGAAAGCCCATCAAAAGAGAAAAAAGAGGTAGATCTGAAAGAGCAGAGCACCCTAGCACTGGAGCAGAAGCCTGATCAGAAGGTGCACAGAGAATCAGACCAACTTCAAGAGGCAGAGAGTGCTGTGGCAACACAAGAAGAGGATCTCCCTGAGCCCACAGAGAAGGACATGAAATCCCATGATATCACTGCTGAGCTGAAAAACAGCTCCGCCAAGGTGACATGGGGACAGGTGAAGTCACCAGATGATTCTGGTGTAAAAACTACACAGGATGACAAAACGGTAGGAGGTAAAATTTCAGCCAGACTTCCCAGCACAACAACTGAGTGTGAGGAAGAGCCTGTGCCACAGACACCTGAAAAGGAGGTGGGTCTGACAGAGCCAAAAATGAGCAGCAATGATGATAGTGTAAAATCTGTTGAGCAGAATGAATCTAATGGCAGTGAAAATTTCACAAATGATATCACAACAGCTGAGGAAAAAGTGAAAGAATCTGATACATCCTCTAAACTAGACACAACTATCTCCCCTAAAGAGGAAACAACCCCACAACCAGAGCCAACCGTCACACCCAAAGAAGAAACATCCCCAAAAATGGACCCAATGGTCACCCCCAAGAACGAGACATCACCTAAACCAGACCCCACAGTCACCCCTAAAGAAGAAACTTCGCCAAAACCAGAAGTCACCCCTAAAGAAGGAACTTCCCCAAAACCAGCCTCAATCATCACCCCTATAGAAAAAACTTCCCAAAAACCAGAGCCAGCAGTCACCCCTAAAGAAGAAACTTCCCCCAAACCAGAATCAACCATCACCCCAAAATATGAAATATCCCCTAAACCAGACCCAACCGTCACCCCTAAAGAAGAAACAAGCCCAAAACCAGACCCAACCGTTAGCCCTAAAGAAGAAACATGCCCAAAACTAGACCCAACCTTCACCCCTAAAGAAGAAACAAGCCCAAAACCAGACCCAACCGTCACCCCTAAAGAAGAAACTTCGCCAAAACCAGAAGCCACCCCTAAAGAAGGAACTTCTCCAAAACCAGAAGTCACCCCTAAAGAAGGAACTTCCCCAAAACCAACCCCAAACATCACCCCTAAAGAAGAAACTTCGCCAAAACCAGAAGCCACCCCTAAAGAAGGAACTTCCCCAAAACCAGAAGTCACCCCTAAAGAAGGAACTTCTCCAAAACCAACCCCAAACATCACCCCTAAAGAAGGAACTTCACCAAAGTCTGAACCAGAAGTCACCCCTAAAGAAGGAACTTCCCCAAAACCAACCCCAAACATCACCCCTAAAGAAGGAACTTCCCCAAAATCAGCCTCAAACGTCACCACTAAAGAAGAGacctcccctaaaccagaatCAACCATCACTCCAAAATATGAAATATCCCCTAAACCAGCCCCAACCGTCACCCCCAAAGAAGAAACATCCCCAAAAATGAACCCAATGGTCACCCCCAAGGATGAGACATCACCTAAACCAGACCCCACAGTCACCCCTAAAGAAGAAACATCACAATCAGACCCAACCATTACCCCTAAAGAAGAACCATCCCCTAAACCAGAACCAGCAGTCACCCTTAAAGAAGAAACTTCCCCAAAATCAGAATCAGTACTCACCCCTAAAGAAACTTTCCCCAAACCAGCTCCAACTATCACCCCCAAAGAGACCTTCCCTAAACCAGAAACAACCACCACCCCTAAAAAAGAAACTTCCCAAAAACCAGAACCAGCAGTCACCCCTAAAGAAGAAACTTCCCCCAAACCAGAATCAACCATCACTCCAAAATATGAAATATCCCCTAAACCAGAATCAACCATCACCCCTAAAGAAGAAACATCCCCAAAACCAACCCCAAACATCACCCCTAAAGAAGAAACTTCACCAAAGTCTGAACCAGAAGTCACCCCTAAAGAAGGAACTTCCCCAAAATCAGCCTCAAACGTCACCACTAAAGAAGAGacctcccctaaaccagaatCAACCATCACCCCAAAATATGAAATATCCCCTAAACCAGCCCCAACCGTCACCCCCAAAGAAGAAACATTCCCTAAACCGGCCCCAACCATCAAACCTACCAAGATCACCCCTAAAGATGAAATATCCCCTATATCAAACTTAATCATTACCCCAGAATCAACGACCACCCCTACAGAGAGTGAAACGATCAGCAGTGGAGGCAAAGCTGAGACTGCCACACCACCAGAGAAACAGGTGCCTTCCGTTGCAAAGAGCAAGGACTCACACAGAGAGGCGCCAGAGAGCAGCACAACTCAGGAGAAACCAGAGGAAAGTACGGCTAAAGAGCCTGAGAAGGTTACGGATCCCAACGATGAAACCCCAAAGACAGAGAACGTGAAGACCAAGGCCTCTGAGGAAAAACCTGAACATGTGGAGATATCTATTACAAAGACATCACCAGTGAAAGAACAGGCTGTATCAACCATGGGTTTGAAAGAGAAAACTGTTGACGGGAAGACAACAGAAGGGGCACAATCTAAGATAGATGAGAAAGGCTTTACAAGAGGTGATGAAGACAGCAAAGATGACAAAACTGCGAAGAAGCCATCAACAGGGCAAGCTGCTCAGCCAATTGCAGAAAAGCAAGCTAAACCTAAAACCTGGGACTTAACCTCTTTTTAGAAAGACCAGATTTAGAGGTCAGTAGACATTTTCTGTAAACCTGCATGATTAGTGCAAGCCTTCAAAGCAATATGAGAACTGCTCCACCTTGAAAGATTAACTGATGCTTAATATGTACAGTATCATAATTCATAGCTGTCAATTATGAGACCATTAATGAGCTCCTGTGAGATATGTACTGCAATATGGAATGTAACTAATCAATAGCTGTATTTTGCTGTTCCTATTTTCTTCTGCCCAAGCGATGATGGGAATTGGGATGATAATGTTCATGGTTGATAATGTGATTTGATAATGCCTGAATAAGCCAAGAAATAAATGCTATTGGAAGAGCA

Function

NR:

description
PREDICTED: neurofilament medium polypeptide-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960266.1 True 5118 mRNA 0.47 3 33657488 33663402

Neighbor

gene id symbol gene type direction distance location
LOC110502623 LOC106608550 coding downstream 39931 33602518 ~ 33617557 (-)
LOC110502621 LOC106608559 coding downstream 55493 33590457 ~ 33601995 (-)
hhat hhat coding downstream 107058 33441958 ~ 33550430 (-)
LOC110502617 LOC106608514 coding downstream 327210 33286841 ~ 33330278 (-)
dnajb12a LOC106608494 coding downstream 491161 33153873 ~ 33166327 (-)
ifit8 LOC106608578 coding upstream 686 33664088 ~ 33671763 (-)
LOC118943903 NA coding upstream 21268 33684670 ~ 33687696 (-)
znf503 LOC106608619 coding upstream 169665 33833067 ~ 33836044 (-)
kcnma1a LOC106613356 coding upstream 513654 34177056 ~ 34469529 (-)
dlg5a LOC106613304 coding upstream 810959 34474361 ~ 34535648 (-)
G1857134 LOC106608573 non-coding downstream 6673 33643972 ~ 33650815 (-)
G1857117 NA non-coding downstream 35301 33621491 ~ 33622187 (-)
G1857084 NA non-coding downstream 101141 33554251 ~ 33556347 (-)
G1857003 NA non-coding downstream 105561 33551702 ~ 33551927 (-)
G1857000 NA non-coding downstream 112506 33544766 ~ 33544982 (-)
G1857290 NA non-coding upstream 106533 33769935 ~ 33770199 (-)
G1857295 NA non-coding upstream 113926 33777328 ~ 33777586 (-)
G1857302 NA non-coding upstream 127424 33790826 ~ 33791122 (-)
G1857310 NA non-coding upstream 141335 33804737 ~ 33804971 (-)
G1857281 NA non-coding upstream 174360 33837762 ~ 33838320 (-)
G1856217 NA other downstream 1011348 32637425 ~ 32646140 (-)
G1855822 LOC106608363 other downstream 1141207 32515749 ~ 32516281 (-)
G1855821 NA other downstream 1142080 32515066 ~ 32515408 (-)
G1855326 NA other downstream 1676155 31979997 ~ 31981333 (-)
G1858519 NA other upstream 1157374 34820776 ~ 34821565 (-)
G1858575 LOC106613168 other upstream 1176498 34839900 ~ 34841662 (-)
G1858636 NA other upstream 1273287 34936689 ~ 34968861 (-)
G1859038 NA other upstream 1579712 35243114 ~ 35243589 (-)

Expression


Co-expression Network