ifit8 (LOC106608578)


Basic Information

Item Value
gene id ifit8
gene name LOC106608578
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 33664088 ~ 33671763 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580809.2
ATCCCTGTAATAGAAACTGAAACTTAACTGAGAGCAATAAAAGACACAGTCACTATCAGAAAACACACTTCATCTGAACAGGGACAGCTGGCATTTGAAAAAACAAGTCCTGATTTGAATTATGAGTGACAGTGAGAACACCCTTGAAAAAAACCTAAAGAAACTGCAATGTCACTTCACCTGGGAGCTAAACAAGGAACAGGCTGACCTCAACCTCCTGGAGATAAAACTACGTGAAACGCTGGAAGTAGTTCAGGAGGGCTTTGAAGGCAATCTGAAAAGACACAGTTTAAACCTTCTGGCTTATATTAAGCACCTAAAAGGTGAAGATAAGAGAGCACTGGAATGCTTAGAGAAGGCAGAGAGGGAAAACGCTCATGGCGAGAGGCTGTGTGTAGTGACGTATGGAAACCTGGCCTGGGTCTGCCATCACATTGGAGATGACATAAGAGCAGACGGGTATATTCAGAAGCTGGAGGAGATACACAAGGCCTCTGCCACAGCCTCAACCTCTGTCCTGCTTGTGCCCAGAGAGGTCCACAGTGAAAAGGCCTGGTCCCTCCTCAAGTTCTCAAAGCACCACTACACAAGAGCCAAGGAGTGCTTTCAGGAGGCTCTGCAGATGGAGCCTGAAGATAAGGAGTGGAACTCGGGTTTTGCCTTCTCTCTGTTCCGCCAGGAGGGCCTGGTGACTAGGGAGGACCAGAGGCTCTCCTATGAGGATTCCCTTGCTGTTAAACAGCTGAATTATGTCCTGGAGCTCAACCCAGACAGTGCCATGACCAGGGTCTACCTGGGCCTGAAGTGCTACAAGAACCGGAGGAACGCAGAGGCCTGGGGCTACATGAGAAAGGCTCTGAGTCTGGCACCCTACGACCTCAGTGTGGTACTACAGgtgggGAGGTTCATGAAAAAGGAGCAGAGTTATGATGAAGCCCTGGCAGTGCTGCTTAGGATGCTGCAGAGGGCGCCAAACTCTTCCCGCCTGCACCACGAGATAGCCAACAACTACCGCTGGAGGGCTAAGCAGAGCGGAGACCCCCACGACCAAACACTGCTCAAACGCTGTGTGTTCCATCTGGAGGAGGGGGCACGCCTCAACCCCACACACATCTACCCTCAGgtggagCTGGCTGTGAGGTACTCAGAGCTGAAGGACACCAGTAAGGCCATGGAGAAGTTCCAAGAGCTGTGGTCCCGGTCAGATCTGAAGCCCTCCGACCGCCAGGCCTGGCACCGCATGTATGGTGACGTCCAGCTCTACCACCTGGGCTCTGAGAGGACCGCTGTCAACCACTACAAGGAGGGCATGAGGCTCTATAACATATCAACTGAATGGAGTCAGTGTAGAAGAAGGCTGCTCAAAGTGCTGAGGTttaacaaggagaggagaggagatgacccCTATGATATCAGAGAGTTTGTTGACTCATTCAAGAGAGGGGTTTTTAATGTGGAGGACGCTGGGGTGTCGACACTGACACTGGGCCACCCCTAGTCCACTTCATAATGAGTAGCCTTCCACTGTGGCTTTACCATCAACAGCTCTTTACATGTTTGATCATTCATAATAACAATTTGCTGATAATGCatttaatatacactgagtacaccaaacattaggaacaccttcctaatattgaatcccaccccccccccccccccccccctttggcctcagaacaacctcaattcggCCAGGCatgggctctacaaggtgtcgatcctgtcccatgttgactccaatgccttTGGGTGGTGCaccattcttgattcacacgGGAAACTCTTGAGCGtggaaaaatccagcagcgttgcagttcttaacacaaaccggtgtgcctggcaccgacTACAATTCCCTGTTCAAAGGcaattcaatattttgtcttgcccattcatcctctgaatggcatacatatacaatccatgtctcaattgtctcaaggcttaaaaatccttatttaacctgtcccctccccttcatctacactgattgaagtggatttaacaagtgacatcaataagggatcatagctttcacctggattcacctggtcagtccttgtcatgtgtatatactgactGACTTTCACCTGGTCTAAAAAGCACTTTACATGCACTTTTTTGTATAGGGAATTAGGGGTTACTAATAAAATACTACGTTGCCCCTCAAAttgaaatatataatatatttaaatataaacATTTTGCCTAGGACATTGTTTAAAATAAGTGAATCACTGTGCATGCTATTCTAACATACAGCTGAGAAGTGACATGGAGTTAAGTGCTTATTTTTGTAAAGATATActatttcacaataaaaaatatatttgctgA
>XM_021580810.2
ATCCCTGTAATAGAAACTGAAACTTAACTGAGAGCAATAAAAGACACAGTCACTATCAGAAAACACACTTCATCTGAACAGGGACAGCTGGCATTTGAAAAAACAAGTCCTGATTTGAATTATGAGTGACAGTGAGAACACCCTTGAAAAAAACCTAAAGAAACTGCAATGTCACTTCACCTGGGAGCTAAACAAGGAACAGGCTGACCTCAACCTCCTGGAGATAAAACTACGTGAAACGCTGGAAGTAGTTCAGGAGGGCTTTGAAGGCAATCTGAAAAGACACAGTTTAAACCTTCTGGCTTATATTAAGCACCTAAAAGGTGAAGATAAGAGAGCACTGGAATGCTTAGAGAAGGCAGAGAGGGAAAACGCTCATGGCGAGAGGCTGTGTGTAGTGACGTATGGAAACCTGGCCTGGGTCTGCCATCACATTGGAGATGACATAAGAGCAGACGGGTATATTCAGAAGCTGGAGGAGATACACAAGGCCTCTGCCACAGCCTCAACCTCTGTCCTGCTTGTGCCCAGAGAGGTCCACAGTGAAAAGGCCTGGTCCCTCCTCAAGTTCTCAAAGCACCACTACACAAGAGCCAAGGAGTGCTTTCAGGAGGCTCTGCAGATGGAGCCTGAAGATAAGGAGTGGAACTCGGGTTTTGCCTTCTCTCTGTTCCGCCAGGAGGGCCTGGTGACTAGGGAGGACCAGAGGCTCTCCTATGAGGATTCCCTTGCTGTTAAACAGCTGAATTATGTCCTGGAGCTCAACCCAGACAGTGCCATGACCAGGGTCTACCTGGGCCTGAAGTGCTACAAGAACCGGAGGAACGCAGAGGCCTGGGGCTACATGAGAAAGGCTCTGAGTCTGGCACCCTACGACCTCAGTGTGGTACTACAGgtggagCTGGCTGTGAGGTACTCAGAGCTGAAGGACACCAGTAAGGCCATGGAGAAGTTCCAAGAGCTGTGGTCCCGGTCAGATCTGAAGCCCTCCGACCGCCAGGCCTGGCACCGCATGTATGGTGACGTCCAGCTCTACCACCTGGGCTCTGAGAGGACCGCTGTCAACCACTACAAGGAGGGCATGAGGCTCTATAACATATCAACTGAATGGAGTCAGTGTAGAAGAAGGCTGCTCAAAGTGCTGAGGTttaacaaggagaggagaggagatgacccCTATGATATCAGAGAGTTTGTTGACTCATTCAAGAGAGGGGTTTTTAATGTGGAGGACGCTGGGGTGTCGACACTGACACTGGGCCACCCCTAGTCCACTTCATAATGAGTAGCCTTCCACTGTGGCTTTACCATCAACAGCTCTTTACATGTTTGATCATTCATAATAACAATTTGCTGATAATGCatttaatatacactgagtacaccaaacattaggaacaccttcctaatattgaatcccaccccccccccccccccccccctttggcctcagaacaacctcaattcggCCAGGCatgggctctacaaggtgtcgatcctgtcccatgttgactccaatgccttTGGGTGGTGCaccattcttgattcacacgGGAAACTCTTGAGCGtggaaaaatccagcagcgttgcagttcttaacacaaaccggtgtgcctggcaccgacTACAATTCCCTGTTCAAAGGcaattcaatattttgtcttgcccattcatcctctgaatggcatacatatacaatccatgtctcaattgtctcaaggcttaaaaatccttatttaacctgtcccctccccttcatctacactgattgaagtggatttaacaagtgacatcaataagggatcatagctttcacctggattcacctggtcagtccttgtcatgtgtatatactgactGACTTTCACCTGGTCTAAAAAGCACTTTACATGCACTTTTTTGTATAGGGAATTAGGGGTTACTAATAAAATACTACGTTGCCCCTCAAAttgaaatatataatatatttaaatataaacATTTTGCCTAGGACATTGTTTAAAATAAGTGAATCACTGTGCATGCTATTCTAACATACAGCTGAGAAGTGACATGGAGTTAAGTGCTTATTTTTGTAAAGATATActatttcacaataaaaaatatatttgctgA

Function

NR:

description
interferon-induced protein with tetratricopeptide repeats 5-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580809.2 False 2343 mRNA 0.47 5 33664088 33671763
XM_021580810.2 True 2115 mRNA 0.46 4 33664088 33671763

Neighbor

gene id symbol gene type direction distance location
LOC110502626 LOC106608577 coding downstream 686 33657488 ~ 33663402 (-)
LOC110502623 LOC106608550 coding downstream 46531 33602518 ~ 33617557 (-)
LOC110502621 LOC106608559 coding downstream 62093 33590457 ~ 33601995 (-)
hhat hhat coding downstream 113658 33441958 ~ 33550430 (-)
LOC110502617 LOC106608514 coding downstream 333810 33286841 ~ 33330278 (-)
LOC118943903 NA coding upstream 12907 33684670 ~ 33687696 (-)
znf503 LOC106608619 coding upstream 161304 33833067 ~ 33836044 (-)
kcnma1a LOC106613356 coding upstream 505293 34177056 ~ 34469529 (-)
dlg5a LOC106613304 coding upstream 802598 34474361 ~ 34535648 (-)
LOC118943866 NA coding upstream 827044 34498807 ~ 34501154 (-)
G1857134 LOC106608573 non-coding downstream 13273 33643972 ~ 33650815 (-)
G1857117 NA non-coding downstream 41901 33621491 ~ 33622187 (-)
G1857084 NA non-coding downstream 107741 33554251 ~ 33556347 (-)
G1857003 NA non-coding downstream 112161 33551702 ~ 33551927 (-)
G1857000 NA non-coding downstream 119106 33544766 ~ 33544982 (-)
G1857290 NA non-coding upstream 98172 33769935 ~ 33770199 (-)
G1857295 NA non-coding upstream 105565 33777328 ~ 33777586 (-)
G1857302 NA non-coding upstream 119063 33790826 ~ 33791122 (-)
G1857310 NA non-coding upstream 132974 33804737 ~ 33804971 (-)
G1857281 NA non-coding upstream 165999 33837762 ~ 33838320 (-)
G1856217 NA other downstream 1017948 32637425 ~ 32646140 (-)
G1855822 LOC106608363 other downstream 1147807 32515749 ~ 32516281 (-)
G1855821 NA other downstream 1148680 32515066 ~ 32515408 (-)
G1855326 NA other downstream 1682755 31979997 ~ 31981333 (-)
G1858519 NA other upstream 1149013 34820776 ~ 34821565 (-)
G1858575 LOC106613168 other upstream 1168137 34839900 ~ 34841662 (-)
G1858636 NA other upstream 1264926 34936689 ~ 34968861 (-)
G1859038 NA other upstream 1571351 35243114 ~ 35243589 (-)

Expression


Co-expression Network