Item | Value |
---|---|
gene id | XLOC_037409 |
gene name | twist2 |
gene type | coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007120.7 |
NCBI id | CM002893.2 |
chromosome length | 56459846 |
location | 45839260 ~ 45843479 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
symbol | description |
---|---|
twist2 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in developmental process and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including brain; cardiovascular system; mesoderm; notochord; and tail bud. Human ortholog(s) of this gene implicated in Barber-Say syndrome; ablepharon macrostomia syndrome; and focal dermal hypoplasia. Orthologous to human TWIST2 (twist family bHLH transcription factor 2). |
id | name | namespace |
---|---|---|
GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
GO:0032502 | developmental process | biological_process |
GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
GO:0046983 | protein dimerization activity | molecular_function |
id | description |
---|---|
ZDB-GENE-980526-235 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in developmental process and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including brain; cardiovascular system; mesoderm; notochord; and tail bud. Human ortholog(s) of this gene implicated in Barber-Say syndrome; ablepharon macrostomia syndrome; and focal dermal hypoplasia. Orthologous to human TWIST2 (twist family bHLH transcription factor 2). |
ensembl_id | ENSDARG00000078266 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00073601 | True | 1227 | mRNA | 0.45 | 2 | 45839260 | 45843479 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_037408 | BX897692.2 | coding | upstream | 17675 | 45821469 ~ 45821585 (+) |
XLOC_037407 | si:dkey-34f9.3 | coding | upstream | 45066 | 45789887 ~ 45794194 (+) |
XLOC_037406 | asb1 | coding | upstream | 141616 | 45680802 ~ 45697644 (+) |
XLOC_037405 | traf3ip1 | coding | upstream | 171773 | 45605410 ~ 45667487 (+) |
XLOC_037404 | NA | coding | upstream | 285882 | 45548787 ~ 45553378 (+) |
XLOC_037410 | NA | coding | downstream | 21788 | 45865267 ~ 45884134 (+) |
XLOC_037411 | NA | coding | downstream | 535230 | 46378709 ~ 46395404 (+) |
XLOC_037412 | NA | coding | downstream | 571679 | 46415158 ~ 46431296 (+) |
XLOC_037413 | NA | coding | downstream | 639450 | 46482929 ~ 46616033 (+) |
XLOC_037414 | slc4a3 | coding | downstream | 801154 | 46644633 ~ 46684539 (+) |
XLOC_037403 | NA | non-coding | upstream | 577499 | 45261384 ~ 45261761 (+) |
XLOC_037401 | NA | non-coding | upstream | 716270 | 45112496 ~ 45122990 (+) |
XLOC_037400 | BX510317.1 | non-coding | upstream | 774991 | 45064155 ~ 45064269 (+) |
XLOC_037416 | NA | non-coding | downstream | 995167 | 46838646 ~ 46840389 (+) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01000009_14432830_14450364 | TWIST1.L, TWIST1, TWIST2, TWIST1B, TWIST1.S | coding | CI01000009 | null | 14432716 ~ 14451542 (+) |
bowfin (Amia calva) | AMCG00001134 | twist2,LOC106586121 | coding | CM030137.1 | CM030137.1 | 16008005 ~ 16008487 (+) |