XLOC_037409 (twist2)



Basic Information


Item Value
gene id XLOC_037409
gene name twist2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 45839260 ~ 45843479 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00073601
AAAAATTAGGAAAAAACTTCCTGCGGGAGGAAAACCGTGCCAAGCTCTACTTCTGGAAGTAGGGGACGCGCGCAGTGTCAGGACTTCAGGAGGACAGACAAAATCCCCAACAACAAAACGGATATTACTAGTCTAAACCACGGAACCAAAAGTGGAGATCGTATTTTCTCCTCgtttctttaaaaaagaaatggaagAGAGTTCTAGCTCTCCCGTCTCCCCAGTGGACAGCCTGGTGACCAGCGAGGAGGAGCTGGACAGACAGCAGAAAAGGTTCGGGAGGAAAAGGAGGCAAGGAAGGAAGTCGAGCGAGGACAGCAGCAGCCCGAGCTCCGTCAATAAACGTAACAAAAAGCCGAGCCCGAGCAGCACTCAGTCCTTCGAGGAGCTCCAGAACCAGCGCGTCCTGGCGAACGTACGCGAGCGGCAACGGACTCAATCGCTGAACGAAGCCTTCGCGTCTTTGCGCAAAATCATCCCCACGCTCCCCTCGGATAAACTCAGCAAGATCCAGACGCTCAAACTCGCATCCAGGTACATTGATTTCCTCTGTCAGGTGCTGCAGAGCGACGAGATGGACAACAAGATGTCCAGTTGCAGCTACGTCGCGCACGAGAGACTCAGTTACGCGTTTTCAGTGTGGAGGATGGAGGGCGCGTGGTCGATGTCTGCGTCCCACTAGCAGCGAGACGCGTCCTGATAATGCCGAACGGACTGTTTACTTCCACTAATTTTGAAGATGCCAAAGGATTATTCGATGAACCTCTAAACCTCAGTGACGTGGCCAAAGGACATTCAGTGGATACATCTACGGACTTGAGCATCCTCATGAAGGACACAATAAAAGGGACTTTTTAATATACTTAGAGGAAAAGTAGATGACGTCTTCTGTGTCGTCAAATACATTTAATCTTTTTCACAAGTTATTCTTAAATGTCGCCATGATGATAGTACAGGAAGGCTATCTGCTATCTGTATGGAAACTATATTTCATGTCTGTCTCTAAACAgaagagtttatatatatataagaacaaaaaaaaaaaactattgtacaTAGGCTACCTGCGAGTATTGTCAATTTTAAAGGGACCAATGCAATTATGAGCAATACTTTCTTGAAGTACGCTGCATGGATAAATGCATACATTTGATTTTTCCTATGCAACATTTTTCGATTTCCatccaatgtttattttgcttatttattaaaacatatttttgaaca

Function


symbol description
twist2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in developmental process and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including brain; cardiovascular system; mesoderm; notochord; and tail bud. Human ortholog(s) of this gene implicated in Barber-Say syndrome; ablepharon macrostomia syndrome; and focal dermal hypoplasia. Orthologous to human TWIST2 (twist family bHLH transcription factor 2).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0032502 developmental process biological_process
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-235 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in developmental process and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including brain; cardiovascular system; mesoderm; notochord; and tail bud. Human ortholog(s) of this gene implicated in Barber-Say syndrome; ablepharon macrostomia syndrome; and focal dermal hypoplasia. Orthologous to human TWIST2 (twist family bHLH transcription factor 2).

Ensembl:

ensembl_id ENSDARG00000078266

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00073601 True 1227 mRNA 0.45 2 45839260 45843479

Neighbor


gene id symbol gene type direction distance location
XLOC_037408 BX897692.2 coding upstream 17675 45821469 ~ 45821585 (+)
XLOC_037407 si:dkey-34f9.3 coding upstream 45066 45789887 ~ 45794194 (+)
XLOC_037406 asb1 coding upstream 141616 45680802 ~ 45697644 (+)
XLOC_037405 traf3ip1 coding upstream 171773 45605410 ~ 45667487 (+)
XLOC_037404 NA coding upstream 285882 45548787 ~ 45553378 (+)
XLOC_037410 NA coding downstream 21788 45865267 ~ 45884134 (+)
XLOC_037411 NA coding downstream 535230 46378709 ~ 46395404 (+)
XLOC_037412 NA coding downstream 571679 46415158 ~ 46431296 (+)
XLOC_037413 NA coding downstream 639450 46482929 ~ 46616033 (+)
XLOC_037414 slc4a3 coding downstream 801154 46644633 ~ 46684539 (+)
XLOC_037403 NA non-coding upstream 577499 45261384 ~ 45261761 (+)
XLOC_037401 NA non-coding upstream 716270 45112496 ~ 45122990 (+)
XLOC_037400 BX510317.1 non-coding upstream 774991 45064155 ~ 45064269 (+)
XLOC_037416 NA non-coding downstream 995167 46838646 ~ 46840389 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_14432830_14450364 TWIST1.L, TWIST1, TWIST2, TWIST1B, TWIST1.S coding CI01000009 null 14432716 ~ 14451542 (+)
bowfin (Amia calva) AMCG00001134 twist2,LOC106586121 coding CM030137.1 CM030137.1 16008005 ~ 16008487 (+)