LOC110502643 (if4e)


Basic Information

Item Value
gene id LOC110502643
gene name if4e
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 34889322 ~ 34909144 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580852.2
TTTTTAAGACATTAATTTTAATTGTTAGTTAGAGCCGCCACTTGAATATCAATCTGGTCAATATAATAGATAATCTTTCTTCAGACACAACCTATAGCAATACTCCTGATATACGTGTAGGCCTACtcgaaatgtcaggaattttctTTTGTGAACAGAAGTCAACACATTTCCTTGTCACACAGTGACATATTTACCTATCAGTCTGTAATGGAGATTGAAAGAGTTGTTTTAATTGGCCATAAATAGTGATACAAGTCCTGCGCGCGGAAAGTATACCCTCAGATATAGTGGGCTTACTCGGTTTCCGTAGATTTTTTTAGTGGTTCGTGACGCACTAACGCGGAACGGACAGGTTAATTTTGACAGGCAAGATGGCGACTTCGGAGCCGAATGCACCTGAAACAGAAGAGCCCCAACCTGAAGTTATCCTCACTGCACCACCTGTGGTTGCTGGTTCTCAGCAGTACATCAAACACCCCTTGCAAAATAAATGGGCCCTGTGGTATTTCAAAAATGACAAGAGCAAAAGCTGGACAGAGAACCTTCGTCTCATCGCAAAGTTTGACACAGTGGAAGACTTCTGGGCATTATATAACCACATACAGCAGCCCAGCAAGTTGGGCTTTGGCTGTGACTACTGCTTATTTAAGgatggGGTGAAGCCAATGTGGGAGGATGACAAGAACAAGCTGGGTGGGAGGTGGCTGATGACCCTCAGCAAACAGCAGAGACAAATCGACCTCGACCGCTACTGGATGGAGACGctgTTGTGTTTAATCGGCGAGTCATTTGACGAGGCCAGTGAAGATGTGTGTGGAGCGGTGGTCAACATCCGACCCAAGGGAGATAAAATATCCATCTGGACCGGAAACTGTCAGAACAAGGAAGCCATCGTGACAATAGGACAACAGTATAAAGAGCGCCTGAGTATCCCCATCAAGCTCCTGATTGGCTACCAGTCACATGACGACACGTCTAGCAAGAGTGGTTCCACCACCAAGAACATGTACTCAGTCTGATCAACACCTACCCCCAATCTCAGCTCAACTATCAACTCCCTGCATCACCAACCCATTAATACTTTTCAGTTGTCAACTGCTGTTAGTGTCCTTCCTTTTTACAGACGAGAGAATTGTTGAAACGTATATAAAATTAGAGACGCCTCCCTGACACCCGATGGACCGGCTGGCTAACCTCCGGGTCTTGTCGGGAAgaagaggaaagaaagaaaggacaGCGTCAGCTGAAGCTGTTGGGATTTGAGCTAGAAGATCGTTAAATTAGTTAATTTTAGAATTGGAGTATATGTGACTAATAATACCAGTGGCTTTCCCCCTACTAACGTAACTGAGGAGAAGATCTGTCGTTTATGGCTTGATTAAAAGACAGACAACTTTCttagctgtaaaaccttttcCTTTTCTCATGCAGAGTTTATGATCATTCCCTGTTATGAAAAGTGTTTCTCACCAACCACCCAGGATAGAAAAGTAGACGAGATTCATTCAGCAGATTTTAAAGGGCAACCAGCGTTTTAACCTTCTTTAGTTGGAGGTGTTTGGCATGAGAAGGGATTGCAGATGCACCTGTTGCAGAAAAGACAACGGTACCTTAATTTGTTTTTGTGTAAAAGAATAGTAGCGGTAACAGAAGAACGGCCACATATAGTTTCAGCCATGCTGGGATTGTGGATCCTTTGCTTGTAGAACTATTTTGAACTTTTGTTTCCCTTACATGCATTTATGATATATGCATTGCAGTTGAACTACATAGTTGGAGGACAACCATGAAAAAGAAACTGAGTTCCTtacaatttttttgtttttgaggAGGTTAACGACATGGACTACTGCTTCATAATATAGAACATTTTTTACAGTGTATCATACTAAGTAAAGATGCCTGGACAAGTTTTAGGTCTGCTTCTTACCGTTTTCTTCCTAACAAACTGTAGAACATTTCGCACTACTCTGGGGCCTGTGCGAGTGGAGAAAAAAGGATATCTATCCATCGTGAAATGATTTAGCTTATAATGTATCTTTATTATCTGTAATTCCAGGATGTATATTACCTTCTTTCAAGTAAAGGTTAAGTGCTTTGCATTAAAACCAGAACCACACGGT
>XM_021580851.2
TTTAAGACATTAATTTTAATTGTTAGTTAGAGCCGCCACTTGAATATCAATCTGGTCAATATAATAGATAATCTTTCTTCAGACACAACCTATAGCAATACTCCTGATATACGTGTAGGCCTACtcgaaatgtcaggaattttctTTTGTGAACAGAAGTCAACACATTTCCTTGTCACACAGTGACATATTTACCTATCAGTCTGTAATGGAGATTGAAAGAGTTGTTTTAATTGGCCATAAATAGTGATACAAGTCCTGCGCGCGGAAAGTATACCCTCAGATATAGTGGGCTTACTCGGTTTCCGTAGATTTTTTTAGTGGTTCGTGACGCACTAACGCGGAACGGACAGGTTAATTTTGACAGGCAAGATGGCGACTTCGGAGCCGGTAAGCGAGATTGAGAATGCACCTGAAACAGAAGAGCCCCAACCTGAAGTTATCCTCACTGCACCACCTGTGGTTGCTGGTTCTCAGCAGTACATCAAACACCCCTTGCAAAATAAATGGGCCCTGTGGTATTTCAAAAATGACAAGAGCAAAAGCTGGACAGAGAACCTTCGTCTCATCGCAAAGTTTGACACAGTGGAAGACTTCTGGGCATTATATAACCACATACAGCAGCCCAGCAAGTTGGGCTTTGGCTGTGACTACTGCTTATTTAAGgatggGGTGAAGCCAATGTGGGAGGATGACAAGAACAAGCTGGGTGGGAGGTGGCTGATGACCCTCAGCAAACAGCAGAGACAAATCGACCTCGACCGCTACTGGATGGAGACGctgTTGTGTTTAATCGGCGAGTCATTTGACGAGGCCAGTGAAGATGTGTGTGGAGCGGTGGTCAACATCCGACCCAAGGGAGATAAAATATCCATCTGGACCGGAAACTGTCAGAACAAGGAAGCCATCGTGACAATAGGACAACAGTATAAAGAGCGCCTGAGTATCCCCATCAAGCTCCTGATTGGCTACCAGTCACATGACGACACGTCTAGCAAGAGTGGTTCCACCACCAAGAACATGTACTCAGTCTGATCAACACCTACCCCCAATCTCAGCTCAACTATCAACTCCCTGCATCACCAACCCATTAATACTTTTCAGTTGTCAACTGCTGTTAGTGTCCTTCCTTTTTACAGACGAGAGAATTGTTGAAACGTATATAAAATTAGAGACGCCTCCCTGACACCCGATGGACCGGCTGGCTAACCTCCGGGTCTTGTCGGGAAgaagaggaaagaaagaaaggacaGCGTCAGCTGAAGCTGTTGGGATTTGAGCTAGAAGATCGTTAAATTAGTTAATTTTAGAATTGGAGTATATGTGACTAATAATACCAGTGGCTTTCCCCCTACTAACGTAACTGAGGAGAAGATCTGTCGTTTATGGCTTGATTAAAAGACAGACAACTTTCttagctgtaaaaccttttcCTTTTCTCATGCAGAGTTTATGATCATTCCCTGTTATGAAAAGTGTTTCTCACCAACCACCCAGGATAGAAAAGTAGACGAGATTCATTCAGCAGATTTTAAAGGGCAACCAGCGTTTTAACCTTCTTTAGTTGGAGGTGTTTGGCATGAGAAGGGATTGCAGATGCACCTGTTGCAGAAAAGACAACGGTACCTTAATTTGTTTTTGTGTAAAAGAATAGTAGCGGTAACAGAAGAACGGCCACATATAGTTTCAGCCATGCTGGGATTGTGGATCCTTTGCTTGTAGAACTATTTTGAACTTTTGTTTCCCTTACATGCATTTATGATATATGCATTGCAGTTGAACTACATAGTTGGAGGACAACCATGAAAAAGAAACTGAGTTCCTtacaatttttttgtttttgaggAGGTTAACGACATGGACTACTGCTTCATAATATAGAACATTTTTTACAGTGTATCATACTAAGTAAAGATGCCTGGACAAGTTTTAGGTCTGCTTCTTACCGTTTTCTTCCTAACAAACTGTAGAACATTTCGCACTACTCTGGGGCCTGTGCGAGTGGAGAAAAAAGGATATCTATCCATCGTGAAATGATTTAGCTTATAATGTATCTTTATTATCTGTAATTCCAGGATGTATATTACCTTCTTTCAAGTAAAGGTTAAGTGCTTTGCATTAAAACCAGAACCACACGGT

Function

NR:

description
eukaryotic translation initiation factor 4E-like isoform X1

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03259 EIF4E; translation initiation factor 4E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580852.2 False 2126 mRNA 0.42 7 34889322 34909144
XM_021580851.2 True 2139 mRNA 0.42 7 34889324 34909144
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110502641 LOC106613168 coding upstream 3574 34837977 ~ 34885748 (+)
LOC110502638 LOC106613192 coding upstream 96701 34659199 ~ 34792621 (+)
LOC110502640 NA coding upstream 110028 34777531 ~ 34779294 (+)
zfand4 LOC106613273 coding upstream 241041 34619377 ~ 34648281 (+)
washc2c NA coding upstream 270362 34584929 ~ 34618960 (+)
LOC110502645 nfu1 coding downstream 19690 34928834 ~ 34936602 (+)
LOC110502646 LOC106613116 coding downstream 36633 34945777 ~ 34979796 (+)
LOC110502647 LOC106613106 coding downstream 85234 34994378 ~ 35045962 (+)
ftr14l LOC106613088 coding downstream 182108 35091252 ~ 35096616 (+)
LOC110502650 LOC106577245 coding downstream 206303 35115447 ~ 35213443 (+)
G1857945 NA non-coding upstream 1857 34887199 ~ 34887465 (+)
G1857938 NA non-coding upstream 30043 34859067 ~ 34859279 (+)
G1857926 NA non-coding upstream 63025 34823640 ~ 34826297 (+)
G1857925 NA non-coding upstream 69083 34819929 ~ 34820239 (+)
G1857972 NA non-coding downstream 24501 34933645 ~ 34933849 (+)
G1857986 NA non-coding downstream 67315 34976459 ~ 34977140 (+)
G1858669 NA non-coding downstream 76631 34985775 ~ 34986027 (+)
G1857923 NA other upstream 71186 34817749 ~ 34818136 (+)
G1857224 NA other upstream 1112581 33776305 ~ 33776741 (+)
LOC110502624 LOC106608565 other upstream 1298943 33554265 ~ 33590741 (+)
G1856836 NA other upstream 1369506 33519482 ~ 33519816 (+)
G1856720 LOC106577204 other upstream 1545710 33340019 ~ 33343612 (+)
G1859175 NA other downstream 507368 35416512 ~ 35417101 (+)
crtac1b crtac1 other downstream 1020915 35879332 ~ 35934997 (+)
G1859436 NA other downstream 1045024 35954168 ~ 36026986 (+)
LOC110503110 LOC106612973 other downstream 1355354 36264498 ~ 36391057 (+)
G1860679 NA other downstream 1814928 36724072 ~ 36724509 (+)

Expression

LOC110502643(if4e) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 60.
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LOC110502643(if4e) Expression in each Bioproject

Bar chart with 21 bars.
LOC110502643(if4e) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network