LOC110502644 (LOC106613146)


Basic Information

Item Value
gene id LOC110502644
gene name LOC106613146
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 34915502 ~ 34936389 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580853.2
TTACCATAGCATAAAGTTTTATTTCTGGACAACTTTAATAACACATATTTTTAAGTTAATCTGAAACTTTACAGTTCAGTAAAGGAATCTAAGAAACGTATAGTTGGCTAGAGTTCCACACTGCCCCTGGGGAACTAGAGTTTGACCGCTATGCAGTCTACAGTGTGTGCTATGTAATTTAAAACAAACAGGGAGATAGCGTCGAGAGGGCCCACCCCATGTTTCCTCACGTCTGTCCTCTGACAGGACAAGGTGGTACTCCCTTCCAAAAAGGAGTGGCAATATTGGTTAGAACTTTAGTTTCCTCTGCTGCTCTCAAATGGCAGGAATGTTGCCTGGGTGGTGGAAGGTACACAGACAAACTGGTACTACGTCAATCTGCTGGATATACTTGAATGATCTAGTTTGGTAACAGGACATACTTATTGGGATTCTACAGTTACGATGAGGCGTCAGGTTTATGGGTGACTGACTCTGCTGTGGTGGAATCTAGAGGCAGAAATCTTCAAAGTGCCAGAAAGACAGACTGTGTCTGGACCCAGGTCGTCACTACTGTACTTCTGCTGCTGCTCTCACTAAACTACCAAGACATGGTCCTCTGGAGTctactccccatctccctctccttggTGTCTCTCATTGGCACATGGGTGACGTATGGCCTGGCATACAGCTATGACCATGTGTGTTCCCTCAACAACTGGGCCCCCGGGAACCCCTGCGGAAACAATACAACTATGGCATGTTGTCAAGTTCCCACCATAAGCACGAGTGGAACAAGCTCACCAGAAAACTCTTTGTTCACAGCCACCATCAATGCTGCTTCATTTCTGTTTATGGTGTTCTGTATCTTCCACCATGCTCACATCTTGGAGAGGAACAGTGTCCACTCCATGCTCAGTAGAATCGCCCTGGTGTTTGGTGGAGTGGCAGCCATCGGGGCCTTCGTGGCTGGGAACTGCAATcccgAGTACCTAACACTGGCCCATTACCTGGGGGCTGCGGTAAGCTTCCTGTGTATCTGTTTCTACAGCCTGCTCCTCACGGTGCTCACAGGGAAGTGTGTTCTGACCCGGATGGAGTGGTTCCTCTACCCAGCACGGGTCATGTCTACTGCGGTCCAAATCATTGTCACTATTGGCTATGCAATCTTGTTTGTACAGGAGGAATACGTGTACAAGCACTCAGCGGCCGTGTTTGAGTGGATACTGAGCGTCAACCTGGAGCTGTTTGAGCTCAGCTTCGCTGTTGAGTtctgtttcttctcctcctccatgttgtgtACACTGCTGGGGAAGAAAGATGAGGAGAAGCCTATCCTTCTGGCCTGAGAAGATGAGATGCTACTGGGCTGGGGGACCTACTGTAAGAGACACTTGGGTCATGTGATGCATGAAATGGAAGAAAACGTTCCAAAATGGAGAGACCAGCTGGACTTGTCCATTAAGTGTCGGTTAAAAAAAATGTCACGTTGTGCCCTAATGAAATAACCCAGTAGTTTACAAACTTTTCTATGTTGTGACTGATCTAAAGCTTGTGGAATTGGACCAACCAAGTAAAGGGAACAATTGTTTGTAACCGGTTCTGGCTGCGACCAAAAAATGAATCAGCTGAATCGGCCACGACCCACCGTTTGGGGAAACACTGACCTAGTGGCATCAAAGATGGGGATCAAACATAACCTTTGATCTCATTCTCAGACCAAGTCTTATTATTGAGGAtgggttttaattttttttaatcagGGCTGAAATCATTTTTCTTATGCAAGCCCCTAAATACAAAACGAAAGATGAGTTATTCGGGTCACAACAAATCTAAGTATTTCTGAAAGCTTTGGAAAAGTAAAACTGTCCATCCTACAACTTTCATAGCCACTGATGGACCAATACCAGGACACCTTAGCATTTGAGTAGTAGTCACTGTAAGTACTAAAATCATTATTTCTATTCTCATGTTCTGAATTGATCAAGGTGAAATGTTCTATTTTATGGGCCATGTAGAATTGTGAATGATGTTATTCTTTCAATGTTTTGTCTATATGTCTAAAACTTCGGGGCATTACTATGCCAGGCAACAACAGAAAAAAGttgtataaaaaaatgtaactgTCTGCAAAGTGAAGTATTGAGGTGTAATGTTGTGATGGAATCTGAGGCCAGTAATCCCTCGACAGCTTTAACATTCAAATGATGATCAAGTCATTTGGTTATTGGTGTGGAGATTAGAAGCCAGTGATGATTCTAAACCTTTGTGATAGAACAGGTGATTTAATGTGAAGGAGGCAGGAAATTCAGGCAGGTGTGGTGGTTCAGATTTATTAATAGAGGCCTCTGTCTTTTGTGATAGATCATTCTGGAAAGCTTTTTGATGGCAGAACAGCTGGTTGTACAAGTTTTACTGCATACATGGCAGATGAGAGAAGAACCAGAACAAAAGCAATCCTTCATCCAGAAACAATCTAACTGAAAATGTTATGAACAGAACAAATTTCCTAGCAAGGCATTATACTTTGTATTTGTTCCTTTCTTCTTATGTATCGTTCTCATTTTCTACTGCTTTCCTACAGTGTTCCTATTCAGGCATTTGTGCAACGATGATTCAGACTTGTTTACAACAACAATATATCATGGACTATATAGTTACATCTTAACAAAGTggtacataaataaataaatatataacgaATTAGTGACAAACTGATGTTTACTAAAAgtagaaataaataaaagcatttAGCCTAATTCAGTATGAAAATATCAACTTGGAAGGTTTCCTACTCTTAATTTTTGGAGGCATTTCTTTTGCCAAGCGTAATTGAGTAATAAAACGTGTGTAAGATCAAATGTAA
>XM_036960316.1
AGGAGTTTTGAGAAAAGTGGTTAGATGGTGGTGCAATTTAAGAGTTTCCCCTcccacttttttgggggggaccaAAATGTGCAATCTGCACTCCGATGTGAGAAAGGCAGAAATATGCAACACAGTGTCTAGGCTGCCAGAAATTCACACGAAGAACTccggaaccacacctgtgtggaagcacctgctttcaatatactttgcattCAAAATTTACGATGAGGCGTCAGGTTTATGGGTGACTGACTCTGCTGTGGTGGAATCTAGAGGCAGAAATCTTCAAAGTGCCAGAAAGACAGACTGTGTCTGGACCCAGGTCGTCACTACTGTACTTCTGCTGCTGCTCTCACTAAACTACCAAGACATGGTCCTCTGGAGTctactccccatctccctctccttggTGTCTCTCATTGGCACATGGGTGACGTATGGCCTGGCATACAGCTATGACCATGTGTGTTCCCTCAACAACTGGGCCCCCGGGAACCCCTGCGGAAACAATACAACTATGGCATGTTGTCAAGTTCCCACCATAAGCACGAGTGGAACAAGCTCACCAGAAAACTCTTTGTTCACAGCCACCATCAATGCTGCTTCATTTCTGTTTATGGTGTTCTGTATCTTCCACCATGCTCACATCTTGGAGAGGAACAGTGTCCACTCCATGCTCAGTAGAATCGCCCTGGTGTTTGGTGGAGTGGCAGCCATCGGGGCCTTCGTGGCTGGGAACTGCAATcccgAGTACCTAACACTGGCCCATTACCTGGGGGCTGCGGTAAGCTTCCTGTGTATCTGTTTCTACAGCCTGCTCCTCACGGTGCTCACAGGGAAGTGTGTTCTGACCCGGATGGAGTGGTTCCTCTACCCAGCACGGGTCATGTCTACTGCGGTCCAAATCATTGTCACTATTGGCTATGCAATCTTGTTTGTACAGGAGGAATACGTGTACAAGCACTCAGCGGCCGTGTTTGAGTGGATACTGAGCGTCAACCTGGAGCTGTTTGAGCTCAGCTTCGCTGTTGAGTtctgtttcttctcctcctccatgttgtgtACACTGCTGGGGAAGAAAGATGAGGAGAAGCCTATCCTTCTGGCCTGAGAAGATGAGATGCTACTGGGCTGGGGGACCTACTGTAAGAGACACTTGGGTCATGTGATGCATGAAATGGAAGAAAACGTTCCAAAATGGAGAGACCAGCTGGACTTGTCCATTAAGTGTCGGTTAAAAAAAATGTCACGTTGTGCCCTAATGAAATAACCCAGTAGTTTACAAACTTTTCTATGTTGTGACTGATCTAAAGCTTGTGGAATTGGACCAACCAAGTAAAGGGAACAATTGTTTGTAACCGGTTCTGGCTGCGACCAAAAAATGAATCAGCTGAATCGGCCACGACCCACCGTTTGGGGAAACACTGACCTAGTGGCATCAAAGATGGGGATCAAACATAACCTTTGATCTCATTCTCAGACCAAGTCTTATTATTGAGGAtgggttttaattttttttaatcagGGCTGAAATCATTTTTCTTATGCAAGCCCCTAAATACAAAACGAAAGATGAGTTATTCGGGTCACAACAAATCTAAGTATTTCTGAAAGCTTTGGAAAAGTAAAACTGTCCATCCTACAACTTTCATAGCCACTGATGGACCAATACCAGGACACCTTAGCATTTGAGTAGTAGTCACTGTAAGTACTAAAATCATTATTTCTATTCTCATGTTCTGAATTGATCAAGGTGAAATGTTCTATTTTATGGGCCATGTAGAATTGTGAATGATGTTATTCTTTCAATGTTTTGTCTATATGTCTAAAACTTCGGGGCATTACTATGCCAGGCAACAACAGAAAAAAGttgtataaaaaaatgtaactgTCTGCAAAGTGAAGTATTGAGGTGTAATGTTGTGATGGAATCTGAGGCCAGTAATCCCTCGACAGCTTTAACATTCAAATGATGATCAAGTCATTTGGTTATTGGTGTGGAGATTAGAAGCCAGTGATGATTCTAAACCTTTGTGATAGAACAGGTGATTTAATGTGAAGGAGGCAGGAAATTCAGGCAGGTGTGGTGGTTCAGATTTATTAATAGAGGCCTCTGTCTTTTGTGATAGATCATTCTGGAAAGCTTTTTGATGGCAGAACAGCTGGTTGTACAAGTTTTACTGCATACATGGCAGATGAGAGAAGAACCAGAACAAAAGCAATCCTTCATCCAGAAACAATCTAACTGAAAATGTTATGAACAGAACAAATTTCCTAGCAAGGCATTATACTTTGTATTTGTTCCTTTCTTCTTATGTATCGTTCTCATTTTCTACTGCTTTCCTACAGTGTTCCTATTCAGGCATTTGTGCAACGATGATTCAGACTTGTTTACAACAACAATATATCATGGACTATATAGTTACATCTTAACAAAGTggtacataaataaataaatatataacgaATTAGTGACAAACTGATGTTTACTAAAAgtagaaataaataaaagcatttAGCCTAATTCAGTATGAAAATATCAACTTGGAAGGTTTCCTACTCTTAATTTTTGGAGGCATTTCTTTTGCCAAGCGTAATTGAGTAATAAAACGTGTGTAAGATCAAATGTAA
>XR_002470356.2
AGGAGTTTTGAGAAAAGTGGTTAGATGGTGGTGCAATTTAAGAGTTTCCCCTcccacttttttgggggggaccaAAATGTGCAATCTGCACTCCGATGTGAGAAAGGCAGAAATATGCAACACAGTGTCTAGGCTGCCAGAAATTCACACGAAGAACTccggaaccacacctgtgtggaagcacctgctttcaatatactttgcattCAAAATTTACGATGAGGCGTCAGGTTTATGGGTGACTGACTCTGCTGTGGTGGAATCTAGAGGCAGAAATCTTCAAAGTGCCAGAAAGACAGACTGTGTCTGGACCCAGGTCGTCACTACTGTACTTCTGCTGCTGCTCTCACTAAACTACCAAGACATGGTCCTCTGGAGTctactccccatctccctctccttggTGTCTCTCATTGGCACATGGGTGACGTATGGCCTGGCATACAGCTATGACCATGTGTGTTCCCTCAACAACTGGGCCCCCGGGAACCCCTGCGGAAACAATACAACTATGGCATGTTGTCAAGTTCCCACCATAAGCACGAGTGGAACAAGCTCACCAGAAAACTCTTTGTTCACAGCCACCATCAATGCTGCTTCATTTCTGTTTATGGTGTTCTGTATCTTCCACCATGCTCACATCTTGGAGAGGAACAGTGTCCACTCCATGCTCAGTAGAATCGCCCTGGTGTTTGGTGGAGTGGCAGCCATCGGGGCCTTCGTGGCTGGGAACTGCAATcccgAGTACCTAACACTGGCCCATTACCTGGGGGCTGCGGTAAGCTTCCTGTGTATCTGTTTCTACAGCCTGCTCCTCACGGTGCTCACAGGGAAGTGTGTTCTGACCCGGATGGAGTGGTTCCTCTACCCAGCACGGGTCATGTCTACTGCGGTCCAAATCATTGTCACTATTGGCTATGCAATCTTGTTTGTACAGGAGGAATACGTGTACAAGCACTCAGCGGCCGTGTTTGAGTGGATACTGAGCGTCAACCTGGAGCTGTTTGAGCTCAGCTTCGCTGTTGAGTtctgtttcttctcctcctccatgttgtgtACACTGCTGGGGAAGAAAGATGAGGAGAAGCCTATCCTTCTGGCCTGAGAAGATGAGATGCTACTGGGCTGGGGGACCTACTGTAAGAGACACTTGGGTCATGTGATGCATGAAATGGAAGAAAACGTTCCAAAATGGAGAGACCAGCTGGACTTGTCCATTAAGTGTCGGTTAAAAAAAATGTCACGTTGTGCCCTAATGAAATAACCCAGTAGTTTACAAACTTTTCTATGTTGTGACTGATCTAAAGCTTGTGGAATTGGACCAACCAAGTAAAGGGAACAATTGTTTGTAACCGGTTCTGGCTGCGACCAAAAAATGAATCAGCTGAATCGGCCACGACCCACCGTTTGGGGAAACACTGACCTAGTGGCATCAAAGATGGGGATCAAACATAACCTTTGATCTCATTCTCAGACCAAGTCTTATTATTGAGGAtgggttttaattttttttaatcagGGCTGAAATCATTTTTCTTATGCAAGCCCCTAAATACAAAACGAAAGATGAGTTATTCGGGTCACAACAAATCTAAGTATTTCTGAAAGCTTTGGAAAAGTAAAACTGTCCATCCTACAACTTTCATAGCCACTGATGGACCAATACCAGGACACCTTAGCATTTGAGTAGTAGTCACTATCATTCTGGAAAGCTTTTTGATGGCAGAACAGCTGGTTGTACAAGTTTTACTGCATACATGGCAGATGAGAGAAGAACCAGAACAAAAGCAATCCTTCATCCAGAAACAATCTAACTGAAAATGTTATGAACAGAACAAATTTCCTAGCAAGGCATTATACTTTGTATTTGTTCCTTTCTTCTTATGTATCGTTCTCATTTTCTACTGCTTTCCTACAGTGTTCCTATTCAGGCATTTGTGCAACGATGATTCAGACTTGTTTACAACAACAATATATCATGGACTATATAGTTACATCTTAACAAAGTggtacataaataaataaatatataacgaATTAGTGACAAACTGATGTTTACTAAAAgtagaaataaataaaagcatttAGCCTAATTCAGTATGAAAATATCAACTTGGAAGGTTTCCTACTCTTAATTTTTGGAGGCATTTCTTTTGCCAAGCGTAATTGAGTAATAAAACGTGTGTAAGATCAAATGTAA
>XM_036960317.1
GAATGGAGAGGGAAGCGAGTGAAATGGCTGTGTGGTTACCCCACTGTGTACCGAACCGGTTTGGCCGAGGACCTGAGTTTTATGATTACCCCTGGAGAAATGGATTGTGGACTGTGAAATGGTATGGCCTGGCATACAGCTATGACCATGTGTGTTCCCTCAACAACTGGGCCCCCGGGAACCCCTGCGGAAACAATACAACTATGGCATGTTGTCAAGTTCCCACCATAAGCACGAGTGGAACAAGCTCACCAGAAAACTCTTTGTTCACAGCCACCATCAATGCTGCTTCATTTCTGTTTATGGTGTTCTGTATCTTCCACCATGCTCACATCTTGGAGAGGAACAGTGTCCACTCCATGCTCAGTAGAATCGCCCTGGTGTTTGGTGGAGTGGCAGCCATCGGGGCCTTCGTGGCTGGGAACTGCAATcccgAGTACCTAACACTGGCCCATTACCTGGGGGCTGCGGTAAGCTTCCTGTGTATCTGTTTCTACAGCCTGCTCCTCACGGTGCTCACAGGGAAGTGTGTTCTGACCCGGATGGAGTGGTTCCTCTACCCAGCACGGGTCATGTCTACTGCGGTCCAAATCATTGTCACTATTGGCTATGCAATCTTGTTTGTACAGGAGGAATACGTGTACAAGCACTCAGCGGCCGTGTTTGAGTGGATACTGAGCGTCAACCTGGAGCTGTTTGAGCTCAGCTTCGCTGTTGAGTtctgtttcttctcctcctccatgttgtgtACACTGCTGGGGAAGAAAGATGAGGAGAAGCCTATCCTTCTGGCCTGAGAAGATGAGATGCTACTGGGCTGGGGGACCTACTGTAAGAGACACTTGGGTCATGTGATGCATGAAATGGAAGAAAACGTTCCAAAATGGAGAGACCAGCTGGACTTGTCCATTAAGTGTCGGTTAAAAAAAATGTCACGTTGTGCCCTAATGAAATAACCCAGTAGTTTACAAACTTTTCTATGTTGTGACTGATCTAAAGCTTGTGGAATTGGACCAACCAAGTAAAGGGAACAATTGTTTGTAACCGGTTCTGGCTGCGACCAAAAAATGAATCAGCTGAATCGGCCACGACCCACCGTTTGGGGAAACACTGACCTAGTGGCATCAAAGATGGGGATCAAACATAACCTTTGATCTCATTCTCAGACCAAGTCTTATTATTGAGGAtgggttttaattttttttaatcagGGCTGAAATCATTTTTCTTATGCAAGCCCCTAAATACAAAACGAAAGATGAGTTATTCGGGTCACAACAAATCTAAGTATTTCTGAAAGCTTTGGAAAAGTAAAACTGTCCATCCTACAACTTTCATAGCCACTGATGGACCAATACCAGGACACCTTAGCATTTGAGTAGTAGTCACTGTAAGTACTAAAATCATTATTTCTATTCTCATGTTCTGAATTGATCAAGGTGAAATGTTCTATTTTATGGGCCATGTAGAATTGTGAATGATGTTATTCTTTCAATGTTTTGTCTATATGTCTAAAACTTCGGGGCATTACTATGCCAGGCAACAACAGAAAAAAGttgtataaaaaaatgtaactgTCTGCAAAGTGAAGTATTGAGGTGTAATGTTGTGATGGAATCTGAGGCCAGTAATCCCTCGACAGCTTTAACATTCAAATGATGATCAAGTCATTTGGTTATTGGTGTGGAGATTAGAAGCCAGTGATGATTCTAAACCTTTGTGATAGAACAGGTGATTTAATGTGAAGGAGGCAGGAAATTCAGGCAGGTGTGGTGGTTCAGATTTATTAATAGAGGCCTCTGTCTTTTGTGATAGATCATTCTGGAAAGCTTTTTGATGGCAGAACAGCTGGTTGTACAAGTTTTACTGCATACATGGCAGATGAGAGAAGAACCAGAACAAAAGCAATCCTTCATCCAGAAACAATCTAACTGAAAATGTTATGAACAGAACAAATTTCCTAGCAAGGCATTATACTTTGTATTTGTTCCTTTCTTCTTATGTATCGTTCTCATTTTCTACTGCTTTCCTACAGTGTTCCTATTCAGGCATTTGTGCAACGATGATTCAGACTTGTTTACAACAACAATATATCATGGACTATATAGTTACATCTTAACAAAGTggtacataaataaataaatatataacgaATTAGTGACAAACTGATGTTTACTAAAAgtagaaataaataaaagcatttAGCCTAATTCAGTATGAAAATATCAACTTGGAAGGTTTCCTACTCTTAATTTTTGGAGGCATTTCTTTTGCCAAGCGTAATTGAGTAATAAAACGTGTGTAAGATCAAATGTAA

Function

NR:

description
transmembrane protein 150A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580853.2 False 2851 mRNA 0.42 7 34915502 34928362
XM_036960316.1 False 2625 mRNA 0.42 8 34915502 34929983
XR_002470356.2 False 2200 mRNA 0.44 9 34915502 34929983
XM_036960317.1 True 2317 mRNA 0.42 7 34915502 34936389

Neighbor

gene id symbol gene type direction distance location
slc25a16 slc25a16 coding downstream 77861 34823020 ~ 34837641 (-)
LOC110502637 LOC106613187 coding downstream 105384 34794341 ~ 34810118 (-)
anxa11a LOC106613295 coding downstream 342441 34548636 ~ 34573061 (-)
dlg5a LOC106613304 coding downstream 379854 34474361 ~ 34535648 (-)
LOC118943866 NA coding downstream 414348 34498807 ~ 34501154 (-)
LOC110502648 LOC106613093 coding upstream 116507 35052896 ~ 35059019 (-)
LOC110503106 NA coding upstream 128957 35065346 ~ 35066105 (-)
LOC110502651 LOC106613069 coding upstream 259804 35196193 ~ 35222086 (-)
LOC110502652 LOC106577244 coding upstream 390301 35326690 ~ 35342828 (-)
LOC110502653 LOC106613059 coding upstream 464444 35400833 ~ 35500950 (-)
G1858620 NA non-coding downstream 5853 34909450 ~ 34909649 (-)
G1858516 if4e non-coding downstream 6366 34906557 ~ 34909136 (-)
G1858604 NA non-coding downstream 34881 34880319 ~ 34880621 (-)
G1858603 LOC106577253 non-coding downstream 35400 34879712 ~ 34880102 (-)
G1858602 LOC106613168 non-coding downstream 36451 34878679 ~ 34879051 (-)
G1858656 NA non-coding upstream 41821 34978210 ~ 34979783 (-)
G1858717 NA non-coding upstream 48130 34984519 ~ 34984974 (-)
G1858728 NA non-coding upstream 64650 35001039 ~ 35004369 (-)
G1858966 NA non-coding upstream 187645 35124034 ~ 35124485 (-)
G1858978 NA non-coding upstream 202720 35139109 ~ 35139376 (-)
G1858575 LOC106613168 other downstream 73840 34839900 ~ 34841662 (-)
G1858519 NA other downstream 93937 34820776 ~ 34821565 (-)
kcnma1a LOC106613356 other downstream 727632 34177056 ~ 34469529 (-)
LOC110502621 LOC106608559 other downstream 1313661 33590457 ~ 33601995 (-)
G1856217 NA other downstream 2269362 32637425 ~ 32646140 (-)
G1858636 NA other upstream 300 34936689 ~ 34968861 (-)
G1859038 NA other upstream 306725 35243114 ~ 35243589 (-)
LOC110502661 golga7b other upstream 1017831 35954220 ~ 36014458 (-)
G1860462 NA other upstream 1512442 36448831 ~ 36451459 (-)
G1861368 NA other upstream 2398638 37335027 ~ 37335414 (-)

Expression


Co-expression Network