LOC110502648 (LOC106613093)


Basic Information

Item Value
gene id LOC110502648
gene name LOC106613093
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 35052896 ~ 35059019 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580856.2
GCTAATGCGCTCCAACGTTGTTGGCGCCAGAAGGAAGATCAGTGGCGCCAGctctacagaaagagagaggaagacattGCAGACAGTCGCAGGCAGCAAGGAGCTAGCTATCGGTTGTGCAGAGCCCATAAACATTTTTTCATCACCTAGCTAGTTAACATAACCAGAAGACAAAAAGCCCTTTCTGACTGACTGATCCAAGAACGACTACCAACCCGCTGTGCTCGCCATACTAAGTGGAGCTATCTTACCCCCAAGTCCCTCTAAGCTTCTCGTCCAGCACAAAAACGGAGGTCGTCGGGCTGGAGTGTGTTCTGATGGCTGAGTCAGAGACTGAGTGTGACACACCCGGCCTTGACACGCTGGGGTCGGAGTGTGTCATCGCCCACAGCCAGGTTGACCTGCACTACGCGGCTGAGACTGAGATCATGACAGAGGAGAAACGCGGCCTGGAACTGGAGATCCACGGGGCCGACCTGGCCAAGATCGAGGGGCTCACCGCGGTGGCCTGTGTGGACGCCATGGTCACAGAGACGGACCATGACTATGTTACCAAGATGGACCACCATGGCGAGATCCAGTGCTTCACCATGGGGGGTGAGGGCAAGGGGGAGGCACTGCTGGGAGAGGTGCTGTTAAAAACTGAGACGGAGCATATGGTCAAGGTGGAGTCGGACCACGTGGGCGGCGAGCTGACGGTGGAGTCAGAGAATGGTGTGGTGATCCACGAGGCCCACGGCCTGCAGTGCAACGAGTGCGGTGAGATCTTCGGCAGCATGGCCGACCTGCACCAGCACTTCGAGATCCACAAGGCCACCAATCCTTACATCTGTGTGCACTGCGGCGAGAGCTTCGCTGTGGAGTCAAGCCTCAAGCAGCACATGAAGATCCACATGAAAGAGAAAGCGTACGCCACCACAGGCGTGGAGATGGTGGGCAAGGGGGTGATCGACACGTTCAACCTCAAGTCTCACCAGATGATCCACAGCCCAGAGAAGCCCCACCGTTGCTCTGAGTGCGGCAAGAGCTTTGCGGCAGCCATCACCCTGCGGGAGCATATGAAGATGCACTCGGAGGACAAGCCATATAAGTGCACCCAGTGCAGAAAGAGCTTCATCCGCCGGCGCCACCTCAAGAAGCACCAGGAGCTCCACGCCAGGGAGAAGCCCTTCACCTGTTCCCAGTGCGGAAAAGGCTTCACCACGTCCTCCAACCTGAAGCAGCACCAGAGGACCCATGCAGGGGACAAGCCCCACCGCTGCACACAGTGTGGGAAGTGCTTTGCCGCTGCCTCCACCCTGCGGGAGCACCAGCGGATCCACTCTGGGGAGAAGCCCTACAAGTGCAACCAGTGCAGGAAGAGCTTCGTCCGCAAGCGCCACCTCAAGAAGCACCAGCAGGTCCACTCTGGTGGGAAACCCTACTCCTGCTCCCAGTGTGACAAGAGCTTTAACCACTCCTCTTCGCTCTCCCGGCACCACAAGGTCCACCTGGAGGCCCGcatctactcctctcctccccagggCAAGGCCTTCTCCTACGGGTCCACTATGAAGCAACAGGCAAGGCTGCACCAGGGGGGAGGCAGAGGTGCGGGGGACAAACCGTACAGCTGCAACCACTGCGACAAGGGCTTCAATCATTCCTCCTCCCTATCCCGCCACCAAAGAGTGCACTCAGAGGGGAAAAGCTACACCTGTGGCCACTGTGGGAAGAGGTTCAACCACTCCTCTTCCCTGTCCAGGCACCAGCGTGTTCACCAGGAGGAGAAGCAGCAGCAGGTGCAGCAACAGGTGGTAGTGCAGCAACAGTACAGCGCTGTGCCCTCGACAAAGGGATTCCCCCATACCACCATCCTCAAACAGCGCATCCTGGCCAGCGAAAAGCCATACAGGTGCTCCCAGTGTGGTAAAGGCTTCAACCATTCATCCTCACTCTCCAGGCATCATAGGATCCACATAGACCAGTGAGCTTCTAGTACACACACCCAAACATAGTCTCATACACACAGCCCTGGCTGACACCCACCCCTGTGATGTTTCTGTTCTACCAATCGGTCCCAAGCTCCAGACATGACACGACTACTGCGAATAAAACCAGGCCAGCTCTCACAGTAAACAGTGTAGAGGTCAGGGGCAAGGAGTTTGTCTTTGTGGAGCAGTCaaaacaaatggacaatgacacaacaaaaatatCCTTTTTCAAGAGGAGGAAGAAATCATAAATAAAAGTTATTGCCTGAACTTAAAGGACTTATTATAACCCTTTACAGAGGAGCTGTTGACAAGTTCCTTGGACCTTTGAGATTAGTTTGTTTTCAATAAATTGTCTGATAGACATTTTGAATGAGCCTGCAATTCTCATTTGTGATTGTGCTTAAATGTTTGCTCTGGAGACCCTCTTTTTGATTGATTGTTTTAAAGAGATCAAATCTGATTGATAATCTAGATCCGGTTTTCCTGAACTTGGTTCTGGaccgttttgttttttgccctagcactagggcaaaaaccaaaacgtgcacctgggGGGGCAGCAAAACAGTTTTGGAAACCCTGATCTACATGATAAAAATGTTTTCTGACCAATGTAGTTATTTAATTCATACATAATACCCCCTTATCTTAGTGTGACCACTTACACGCTTTACTCTGAGAATTCAAGTCATGATGTAACTAACTGACCCGTATGGGGGCGTCTCACTGTATATGACTATATGGAGTGCTTTTCAATATTTAACATTTGAGGTCAATCTCCCACACTTGGCTACTGATGCAACTTGCTATCAAGTCATACTGTCTTGATGGCATAAATTAGCCATTTTGCTATATTTTTTTTGCCCCATCTTACCACCTCACCTGTAAACTCGCGGGAAAAAATAAGAAATCCATGTAAATAATTGTTGATTTATCCTTTTATATATCTGTATAGGTGGCTAGTGTGCAGTTTTGTTCCAGAAATAGGACTTTTATTTATATAAAATTAGTAACATCCCCatagtctccccccccccccccccccccccatccgttttcattttattcattgtttttgttttagGTGTTACAGAGCTACCAGGAAATGTTGCTACTGCTCtcttatgtacatacagtcaaaTCTCGGATCTGGGGCTCCATCCAGTGTGATGCAGCTCCATGTGTATCAGGTAAAGTGGATGGGTATGTACCTAGTGACGTGGTCATACAGCTGAACAGACTGGAGAGCAATACTGCCTCAAGACATCGTAGTATGGGATGCAATTAAGTCGTGATAAGTGGACAAGATGCAtcgctttaaaaaaaataaaaccacCCGGTAGCTTTATTTGAAGTTGACTTGTGTCCTTTTTCATTGAGTCCCTATTGATTTCTGTGTTCCCGTATCAAATGTACATTGTTGTTATTACAGATAGACAATGGACTGGACTCAGGTGTTTGAGTCTTTTTTTTCTGCTTTGGAGACTCATTCGATTATCAGTGTATAGAATTATAGTTAGCTTCATAGGTCTTCACTCAGATGAGAACTTCTATCCTGAATAGATTTATTGTGTATACTAATCTATACGATTACAGGACTAGGTTGCTTTTACTGACAACACTTAATTTTGGACTTCCAGTTTATTTTTTTGTGCAAATTCCATGGGATTGAGCTCTATTTACTGTTctgtgtaaaaacaaaaaataaaaatacttttttttttgatGGTTTGGGTCATTTTCAAAGGATAAAATACATATACTGTTATGGGAGGGAATGATATTTTGAGCAGGTTCTTTTCCCCCTTTTTTTCCCCACATTTATGCTTCAAACCATAGCATAGGCTTATTCCTTGTGTTAGATAGGTGCCTTATTGCATGCTATGTAGAAATGTATGCTGAGCtgtcaattttttatttttttttgttattcataCTAACTTCAACATTTTAAGATGTCATTACTTTCAGTCTTCTATGTATATTACCATGTGTTTACACACATCTCATTGTCATTTAATTTTCTCTCCTGTCTTTGTTGATTGGCCTCAATGTAGGTTTTCTTACTGAAGCTTAATTAAGGAACATACATTTAGTTACAATGTCATCGATCCATATAGGCTCTGCTTTCTGTAGAGGCCCCAGCCAGCCCCACCTTTCCCCCCAGATCTCTGAGTGGAACATATGGACAAATAAAGGTTGACTGTCAACATCGCA

Function

NR:

description
zinc finger protein 883-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580856.2 True 4193 mRNA 0.47 2 35052896 35059019

Neighbor

gene id symbol gene type direction distance location
LOC110502644 LOC106613146 coding downstream 116507 34915502 ~ 34936389 (-)
slc25a16 slc25a16 coding downstream 215255 34823020 ~ 34837641 (-)
LOC110502637 LOC106613187 coding downstream 242778 34794341 ~ 34810118 (-)
anxa11a LOC106613295 coding downstream 479835 34548636 ~ 34573061 (-)
dlg5a LOC106613304 coding downstream 517248 34474361 ~ 34535648 (-)
LOC110503106 NA coding upstream 6327 35065346 ~ 35066105 (-)
LOC110502651 LOC106613069 coding upstream 137174 35196193 ~ 35222086 (-)
LOC110502652 LOC106577244 coding upstream 267671 35326690 ~ 35342828 (-)
LOC110502653 LOC106613059 coding upstream 341814 35400833 ~ 35500950 (-)
LOC110503108 LOC106613040 coding upstream 486555 35545574 ~ 35600621 (-)
G1858728 NA non-coding downstream 48527 35001039 ~ 35004369 (-)
G1858717 NA non-coding downstream 67922 34984519 ~ 34984974 (-)
G1858656 NA non-coding downstream 73113 34978210 ~ 34979783 (-)
G1858630 NA non-coding downstream 123382 34929171 ~ 34929514 (-)
G1858620 NA non-coding downstream 143247 34909450 ~ 34909649 (-)
G1858966 NA non-coding upstream 65015 35124034 ~ 35124485 (-)
G1858978 NA non-coding upstream 80090 35139109 ~ 35139376 (-)
G1858984 NA non-coding upstream 91363 35150382 ~ 35150615 (-)
G1858985 NA non-coding upstream 91740 35150759 ~ 35150982 (-)
G1858989 NA non-coding upstream 97773 35156792 ~ 35157022 (-)
G1858636 NA other downstream 84035 34936689 ~ 34968861 (-)
G1858575 LOC106613168 other downstream 211234 34839900 ~ 34841662 (-)
G1858519 NA other downstream 231331 34820776 ~ 34821565 (-)
kcnma1a LOC106613356 other downstream 865026 34177056 ~ 34469529 (-)
LOC110502621 LOC106608559 other downstream 1451055 33590457 ~ 33601995 (-)
G1859038 NA other upstream 184095 35243114 ~ 35243589 (-)
LOC110502661 golga7b other upstream 895201 35954220 ~ 36014458 (-)
G1860462 NA other upstream 1389812 36448831 ~ 36451459 (-)
G1861368 NA other upstream 2276008 37335027 ~ 37335414 (-)
G1862272 NA other upstream 3097730 38156749 ~ 38157209 (-)

Expression


Co-expression Network