XLOC_037410


Basic Information

Item Value
gene id XLOC_037410
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 45865267 ~ 45884134 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075193
GGAATCGCCGGTTGTGGGAGATTACAGAGCAGAGATGCACGAAGATGTTAATGACTTCCTCATGTGAAGGCAGCGGGATAAAACATACAGTCCCTTCACACAGTTATCGCAGCCGCGGGGAATTGCGGTGTGAACCATCTGAAGGGGGGCAGAAATTAAACTTGCTCCGAGGGGGTGAATTCCCTCCCGTCCCGCTCCAGTTTTGATCTCTTAGAGCCCGGAAGGCGATAGGTCACCTGTGTAATTTGGACTAACACAACAGGCATAAATTGATGCAAAACACGGGATCAAACAGCAAGGTGCTGAAAATGATGGAGTGGCAAATATCTTTGTTTGTTATTGAGGACGCCAGCACCTGCAGTGATGGGTCAGTACACTCATTCGGGACCGGACTGCAGTCTCTCTCTCGGGTGGGCAGCGGATTTTAGACTAAACACGTTTCAAAACAAGTAAAAAGCACATCCGTCGGACACCGAGAGCGTCATTCCGTCTGCGTACTGACCAGAAACAGAGGAGGACAGAAGAGCTCGGTCCCATGCGTTTTCCAAAAGCCTCCTGCGTTCCTCCTTTGTGCAAATATGTTACAAGGACAGACAGGCATGCGGACGCACAAACCATGCAGAAAATCTACAGCTGTGAAGGAAATAGAATGAAAGAAACTTCACCCTGGCCTGCGAAATCAACAACAATCAGGCCAGACCTCGTGGCAAATTTAGCAGGAATGACAAAGAAaggtataaaaataaacaaacggaATCGAGtatacaaaacaaaagcaaaaaaagaataaaactaaTCCCAGATAGAGATGTCCCTTTGTTAAGACTTTGAGTCCGTAGGCTGCCGTTAGTTTTTTTGTGTATTATTGCAAAGTGGTTTGTGAGTGTTTCTTTTTGTGGTGGTCCGAGTGTGGATTGGTATTACGAGAGTCTTTGGGAATgtcgctttttttttctttctaacatCTCCACTTTCAAATCAATGTCGGTCCGCGCACTTCATTTTTGAAAGCAATTCAGATGAGAGTTAATGGATGTGATTTCGATCAAAAAATGCCCCCAAATAGATCATGCTCCAAGAGTAACAAGACACAAGATttcacaaaaagaaaagaaatggtcCCACAAAAACTGAGAGTGCTGACATCACTGTTAAAGCAAAGAAAACCAACACGATTGACACCGGGTCACATTTCAGCCCAAAATCGAAGATTGtttgtgaacaaaaaaaataaatgaataagattaa
>TCONS_00074935
GCGGTGTGAACCATCTGAAGGGGGGCAGAAATTAAACTTGCTCCGAGGGGGTGAATTCCCTCCCGTCCCGCTCCAGTTTTGATCTCTTAGAGCCCGGAAGGCGATAGGTCACCTGTGTAATTTGGACTAACACAACAGGCATAAATTGATTCTTGTCTTCACAGGCAAAACACGGGATCAAACAGCAAGGTGCTGAAAATGATGGAGTGGCAAATATCTTTGTTTGTTATTGAGGACGCCAGCACCTGCAGTGATGGGTCAGTACACTCATTCGGGACCGGACTGCAGTCTCTCTCTCGGGTGGGCAGCGGATTTTAGACTAAACACGGTAAAGACAAGCAAACAGCACACAGCTCTCAAAACA
>TCONS_00075194
GCGGTATTCAAAAACATGGTACTTTATAGTTGATGTCAAAGACAAACATTAGAGCAAAGGTCCCAAGAAAAGTTCTATTGTAACAATGGAAAAACAAAGTGACAAAAATAATATGCATTTCTTACATTTTGTAAACCTAGAACTGTTCTCGAGCCACAGTGGTCACAGGTATTACTGGCTGATAAGTGttgggtgtgttttttttctcctttttgaaCAAACTGAAGAAATATCTGACAAAGCATCTGGAAAAAGCCCTTTGATGGTTCCAGATGTTTCTAAAGGAAAGACTCTAATCTCTTCCTAGTCAACCCGAAAAAATAGGaagagcagaaaaacaaaacaaaacgaggaAAGCAAAAGAGGACAGTCTAACGTGTGGCGTAGTGCGTAGTTCACCTAAAACAATGCTCTACATAAATACCATAAAGTCTATAGTCTGTATGTCACAAGTGCTAGATAACGTTCTTGCTGTGGttgtaaaatattcaaaagtcttttttttctttcattccttTTTTAGTTTCAAAACAAGTAAAAAGCACATCCGTCGGACACCGAGAGCGTCATTCCGTCTGCGTACTGACCAGAAACAGAGGAGGACAGAAGAGCTCGGTCCCATGCGTTTTCCAAAAGCCTCCTGCGTTCCTCCTTTGTGCAAATATGTTACAAGGACAGACAGGCATGCGGACGCACAAACCATGCAGAAAATCTACAGCTGTGAAGGAAATAGAATGAAAGAAACTTCACCCTGGCCTGCGAAATCAACAACAATCAGGCCAGACCTCGTGGCAAATTTAGCAGGAATGACAAAGAAaggtataaaaataaacaaacggaATCGAGtatacaaaacaaaagcaaaaaaagaataaaactaaTCCCAGATAGAGATGTCCCTTTGTTAAGACTTTGAGTCCGTAGGCTGCCGTTAGTTTTTTTGTGTATTATTGCAAAGTGGTTTGTGAGTGTTTCTTTTTGTGGTGGTCCGAGTGTGGATTGGTATTACGAGAGTCTTTGGGAATgtcgctttttttttctttctaacatCTCCACTTTCAAATCAATGTCGGTCCGCGCACTTCATTTTTGAAAGCAATTCAGATGAGAGTTAATGGATGTGATTTCGATCAAAAAATGCCCCCAAATAGATCATGCTCCAAGAGTAACAAGACACAAGATttcacaaaaagaaaagaaatggtcCCACAAAAACTGAGAGTGCTGACATCACTGTTAAAGCAAAGAAAACCAACACGATTGACACCGGGTCACATTTCAGCCCAAAATCGAAGATTGtttgtgaacaaaaaaaataaatgaataagattaaaataataataataataataaaaaaatttaaaaataaaataaaaatcacagaattttttttatgtttcttgaAATTCAAGGTGTAATTAACCCAGTTTTCTAGCATCGCATAATTCttcaggaataaaaaaaaaaaaagttttattaatcaTCGACACATTAAaggaacattattttatttagttattatttgttaccttttttggctcattttacaactgcTTTATgatgagttcagactgcatgacttTTGACTCGAcgacaggttttaagaaatcaCTTCACCCTGGAAGGGCCCCCAAGTGTAACCCACTGTTTCTACTGCACCCATCCCATTCTGAGCTGGAATTTTTTTGTATGGGAGTTGAATGCTCAAACAAGGAGGTTTAATTTTATGTATTACAAAGACATAATGAATTGTTAGAAGTTAGAATTAgttattaagaattttttttaaactagtttaaactattgttgaaaaaaaaaactctttccaTTTAACATTCATTGAAATATATTAGAAAAAGAACTGACATTTTACTGGTCAATAATTCTTTCTTaaaatgcatatacagttgaaATTTAGGTGTCCTgtaatcacaggcaaatcggtgcacATTCACGTtaataacaatcacacagtgaactatcaaagatgcgatctgagagaatcgctgatgggTCGTCGACACCGATCAGATATTtgtcatgctaaatatctggacctgtcggcgattcaaatcatgccgtgtgaaatgtgttctgattgaaaataacatcagcaaatacctacagccaatgaaaaagcagcatccactagtatgagTATCTGTAGGCCAGCGGGAGGATGGGGAcaagttaaaagtgctcattttatTTGGACAAAATTTATATTAACATTGAAtcacattataaaatatattcgTATATGAACAGGTCATTTTAAATAGAAATCATTTTTCGCAATATGAATGtttccattgtatttttaatcatgcatttttcattttgataatgcagccttggtgagcagaatataattaaaatataaggaTTTTGTTGAATTATTGTATCGATTCATGTTACATTGGTATCCTTCTAAAATGGGATTTCGTCGACAACATTCATTgtcataaatgaacaataaataatagcTTTAAGGCATTTGtcaatattaattaataacatttgctaGCACATTAAAATCAGCTGCATCTCTTAACATTAGATAGCATTTAAATGACCAAACATTTCcaaatactgtaaaatgtgcgTTGTTCATTGTTTCTATTAGTAAGTGCATCAcccaatgaaccttattgtaaagctaTGGTAGCCATTTTCAGTAATGCccattagtaataatattaatctcTGCTAGTTAGTTAATACAGCTGCTTGTTGTTAGTTAATTTAGCCTATTAGAGGTCataagtaatatttattaatgcattgtcattcattaaaatatgtatttgttaaTGCTGAAATGAACCTTAACTAAGATGCATTTTAAATCCTACTCTACGAATGAAACATTATaatgtgttattaaattattacatttttatgaagATAAAGTCTGATATTTTTGCATCATTAATGATCCTTTTTGATATCTTAAAGGGGTAAGTTCACCCCCCAAACAATGTATCCACTTACACCTACTTCCTTCAAgccattatgagtttctttcatctgtcaaacacaaattattatattttaaagacagctttaaaatctgtaactattgacttccatagtagaaaatacAAATaccaaatactattgaagtcaatggtcttcaaaatatcctatttagtgttcaacagaagaaagagtgAGTACGTTTTGAGTGGACTATCCTTTTCTGTCCTATACTTATCCTTACAGAAGTCCCCtttctgctattggtcaaacaaacagaaaagcacgccttattttgttaaaaaaacaacaaaaatcttacattttaggCAAAATATGACCCGAATGCAAGCTGAAATCATTCAAACGTATTTAGAAAAACAGTATTTCTATAGTCAAATACGTAAAAATATCCAAAATCCATCTTCGATGTACAGTACCAGGTCACTGTGATGTCAGCATCTACTCAGACACGGACTGTTACCAATGGAAATGTACAGTGTCAGTCCATAATAGCTTTTCATGGGACTTCAATATCAGAGTTTAAAGAGCGCTCTGTCAACCCGAAGCCTGGAACCATGAAGATCCATTTGATCAAGAGTTTTACGGTGCTACTGCGAACGCAtgaaaaccaataaaaaaacagTGCCTTCAGTGGAAGCCAGACCACATACTGAAATATATCACTAGAGTCTGCAatctttataatatataatatatctatagATCTTTGTCATATAAATCTACTATGAACAGAACGTAGTAAATACACAATTGTCGGAATCAGTATACAAAGTAAAAGCATCTCCCTCCCACCGGATACAAAACAAAACGAACGAAAAGTTGTGTTGCTCTCAACTAAAACAAGAAACtaaagcatgtaaaaaaaaacactttgtcaACTACGAGGACTGACAAATGAACACGCAAATAACCCGACAggtaacaaaaaaagaaaaataagtggAGTAGTCATACGTGACAGGCGTATATAAAGGAATAATGGCCTCATATTGAACATGACGCACAGAAAAAGGTAGTTGCCGAGAGGCTAGAGAGGGTCGTTGAACAAATCACGGCCTCTTCATCGAGTAAAGTTCAATGTACAATCAAAGTCAAGCCAAATGATCTACTGTCAGCATGCATAACTGcgtatatatacagttgtatgTGCCGCATCGGCTCTGAAACTACGTCAATGTCCCATGCAGATTGTCTGAGTATCACAGTCATCTCAGAGGCGTAAGTTTTACGATTGTGGAAGCTGGTGGTCCCGCTACGTCCTGGATTGTGTTTTTCGAAAGACGGTAGCACCTGCCCCTAGAGAGCCCTTCTCGCTCAGGCCCGTCCGGCAGGATAAAAACCAGCGCTAAATCTCACCAGGTGGCACGTCTGAAGGCTCAAAGTGGTACATTTTAAAATCGGTAACCagcccttttttttttctttttctccgcTTGTTGAGTAGTATCAGTGTTAGTAGTGATATATGCTAGTGCCCTTAAAGTAACCCGGAATACTAGACATTCATAGCTATATAAAAGTACAACCAGGGGCGGAAATCTAGAAAGTTTGTCTGGAACTACAAATCGTATGACGCACGGTCATCGCAGCCCTATCCTAATATGATCGCAGCAAACTCATGCTCGTTGGCGCTGTTAAACTACGACAGATGGCAGATGGAAAGCTGCATGCTGGTTAACCTTTCAGAGTCGTCGTCTTTGtcggagaaggaaaaaaaaaaaggagggagGTGCGTATTTGGTCATTAGAGTTGAATTAAGTCGCTACATTGGCTTGCCTTCTTGTAAGTGCTGGAGAATTCAATCGAAGGGctccgctttttttttttttttgccctttatAGCTGGCAACTACCTTAAAGTTCGCTGAAGTCATGTAACGTCCAACACAAGCACAGTAAAAATGAGGGAACATAAAAACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075193 False 1248 lncRNA 0.44 4 45865267 45879991
TCONS_00074935 False 364 lncRNA 0.49 3 45865391 45868067
TCONS_00075194 True 4924 lncRNA 0.36 2 45878659 45884134

Neighbor

gene id symbol gene type direction distance location
XLOC_037409 twist2 coding upstream 21788 45839260 ~ 45843479 (+)
XLOC_037408 BX897692.2 coding upstream 43682 45821469 ~ 45821585 (+)
XLOC_037407 si:dkey-34f9.3 coding upstream 71073 45789887 ~ 45794194 (+)
XLOC_037406 asb1 coding upstream 167623 45680802 ~ 45697644 (+)
XLOC_037405 traf3ip1 coding upstream 197780 45605410 ~ 45667487 (+)
XLOC_037411 NA coding downstream 494575 46378709 ~ 46395404 (+)
XLOC_037412 NA coding downstream 531024 46415158 ~ 46431296 (+)
XLOC_037413 NA coding downstream 598795 46482929 ~ 46616033 (+)
XLOC_037414 slc4a3 coding downstream 760499 46644633 ~ 46684539 (+)
XLOC_037415 igfbp2b coding downstream 861214 46745348 ~ 46799620 (+)
XLOC_037404 NA non-coding upstream 311889 45548787 ~ 45553378 (+)
XLOC_037403 NA non-coding upstream 603506 45261384 ~ 45261761 (+)
XLOC_037401 NA non-coding upstream 742277 45112496 ~ 45122990 (+)
XLOC_037400 BX510317.1 non-coding upstream 800998 45064155 ~ 45064269 (+)
XLOC_037416 NA non-coding downstream 954512 46838646 ~ 46840389 (+)
XLOC_037417 NA non-coding downstream 970411 46854545 ~ 47322964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G58446 NA non-coding CI01000009 null 14469534 ~ 14471771 (+)
rainbow trout (Oncorhynchus mykiss) G140696 NA non-coding NC_048566.1 CM023220.2 39151077 ~ 39151284 (+)
bowfin (Amia calva) G128976 NA non-coding CM030137.1 CM030137.1 16024158 ~ 16027580 (-)
tiger barb (Puntius tetrazona) G109439 NA non-coding NC_056714.1 CM032083.1 1636416 ~ 1636997 (-)