XLOC_037414 (slc4a3)


Basic Information

Item Value
gene id XLOC_037414
gene name slc4a3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 46644633 ~ 46684539 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073604
GGTGCCATAATGCTAGATCTGGATCAAACCACACTGCCTGGCATCGCCCACTTGATGGTGGAAACCATGATAATCTCGGACCAGATCAGAGCTGAAGACCGAGCCAATGTGCTGCGAGCGCTTCTGCTCAAACACAGtCACCCCAATGATGAGAAAGAAGGCCTTTTCCACCGGAATCACTCCGTCACCAGTCTGGGCAGCTTCCGTCACAACCACAACCACGTTCACGACACCAGCCTGCCTCTGGTGTCCCAGGACCATGAGGAGATGCACGACAGTAAAGCAGCAGATCATGACAAAGAGAAAAGCCTCCACCCCATCCCAGCTGAGGGACACGCCGCCTCCAGATCTTTGAAACTCTTGGCAAAGATTCCCAAGGATGCCGAAGCAACTGTGGTCTTAGTGGGGTGTGTGGAGTTCCTAGAGAAGCCTGCGATGGCCTTTGTCCGGCTGAACGAGTCTATCCTGCTGGAGTCCATTCTGGAAGTCCCTGTTCCCATTCGCTTCATCTTTGTGCTGTTGGGTCCCACGCAGACCAACGTGGACTATCATGAGATCGGGCGCTCCTTTTCTACCCTCATGTCTGATAAGAATTTCCATGAGGTAGCGTACTTTGCTGATGACCGCCAGGATCTGCTTAATGGCATCAACGAGTTTTTAGACTGCAGTATTGTAATTCCACCATCGGACGTTGAAGGAAAAGACCTGCTGAAAACTGTGGCCTCCTTCCAGAAACAGATGCTACGTAAACGCAAAGAGAGGGAGCTCAAAAAATGTGCCAGTACTGTGACAGGAGCCGAGCTGGAGACCAAAGACGTGAATATAGAAGAACAGGAGGAGGAGGATCAGTTTGATGTAGACCCTCTCAAGCGCTCTGGTATTCCCTTTGGAGGTCTGATTCACGATATTCGCCGCCGTTACCCACGCTACATAAGTGACCTGAAGGACGCCTTGGACACACAATGCATTGCTGctgttattttcatttattttgctgctCTTTCGCCCACTATCACCTTCGGAGGTTTATTAGGTGAGAAGACACAAGGCATGATGGGAGTGTCTGAGCTCATCATCTCCACTGCGACAGTAGGAGTGCTGTTCTCTTTGCTGGCAGGACAACCTCTGCTCATTATTGGCTTTTCTGGACCACTTTTAGTCTTCGAGGAGGCATTTTATAAGTTCTGCCAGGCTCAGGGCTTTGAATATCTGACAGGGCGAGTGTGGATCGGGTTCTGGCTCATCTTTATTGTCCTGGTGATCGTTGCGGCTGAGGGCAGTTTCCTTGTGCGCTATATCTCTCCATTCACCCAGGAGATCTTTGCGTTTCTCATCTCTCTCATTTTCATCTATGAAACCTTCTCGAAGCTAATTAAGGTGTTTCAAGAGCACCCTCTGATGATGAGCTACACGTCAGCTGCCTTCAAACACTCAGACCAGAGAGGGAGCAGTGTGATCGGGGAGCCCATCCTCAACCAGCCCAACACAGCCCTGCTGTCAATGGTGCTCATGATGGGCACCTTCTTCACTGCCTTCTTCCTCAGGAAACTCCGCAACAGCAGATTCCTGGGTGGAAAGGTCAGAAGAGTCATAGGTGATTTTGGGATTCCCATTTCTATACTGATCTCTGTGCTGGTGGATATACTCATCCCTGATACATACACACagAAACTGAACGTCCCCTCTGGTTTCTCGGTCACATCTCCGGACAAACGAGGCTGGTTTATCAGCCCGTTTGGAGATAAACAGCCGTTCCCGGTCTGGATGATGGGGGCCTCTGTGATCCCGGCCCTGCTGGTTTTTATCCTCATATTCATGGAGACGCAGATCACCACATTGATCGTGAGCAAGAAGGAGCGGCGTTTGATGAAGGGCTCTGGCTTTCATCTTGACCTGCTTCTGATAGTGACTTTGGGTGCGATCTGTCCTCTGTTCGGTCTGCCATGGCTGACTGCTGCTACTGTCCGCTCAGTCACTCATGTTAACGCTCTGACAGTCATGAGCAAAGCCACTGCACCCGGAGAAAAGCCCATGATACAAGAAGTGAAAGAGCAGAGGGTCACAGGGATGTGTGTGGCTATCCTAGTGGGGTTGTCTATAGTGATGACAGATGTGCTGCGTCATATTCCTCTGGCTGTGCTATTTGGCATATTTCTCTACATGGGCATCACTTCTCTTACCGGTATCCAACTTTATGAGCGAATCACACTTATGGTCACGCCGGCTAAACATCATCCTGACCACGTCTACGTTACCAAGGTGAAGACGTGGCGTATGAACATGTTCACCGTCATTCAGTTGTTGTGTATAGTCCTGCTGTGGGTGGTGAAGTCGACTGTAGCGTCTCTGGCGTTTCCCTTCATCCTCATCATGACTGTTCCTCTGCGCAGACTCATCCTGACCCGTATCTTTGAAGAGAGAGAGCTGGCAGCCttgGATGCTGATGAAGATTCTCCCAATTTTGACGAAGATGGACGCGATGAATACAACGAGATCCACATGCTTGTGTAGATGACCAATCACTGACCAATCAAAACACAGAATGATGACAAAGATGTATGGAGTCAGAAGGAACTGCCCTCTTTCACGTTTATGTCACGTGTGCTTTCAAATTTTGTAAAAATCCAACATACTGTAAGAATTTTTGGacctttattatttttgttttccccTCCCAGAAAACGTGGCCTACATGTCTTGTGTGCTGCTGCCCAGTGACCTTTGAATATAAGATTAGAAATGACCCGTGCACCTTATAGAAGTCCCAAAAGTGCAATGATGGTGAGATTGATTACTTAATTTGCACCCGTCTGGACCAGAGCCACTGCCTGTAGATCTTAGTTGCCTTGTACTGTGCTGTCAGCATTGACCACATGGGTCTGAATATTACAGTAGCAAGACTCTCGAAGTGGTCAAGTCCCTTTGCTGTGCAGTCCTATTGCTTGAAAACTGTAGTGCAGTCCCTTTAGATGTACTTAATGCAGTAGTGAGATTACTTTGATGGATGTACTGTATGCAGTAGGTACAATAGGTTTAAAGGTGCTATaggtttttgtttttggttttgtaagAGAATAGGATacagaaaatgtccttgctctctgACAGATATCACTATTTTCCTGTCAGTCATTTCCAATTTTGTGGCTTAGGAGTTGCTGTAAAAGGGTAACTTTTCTTATAACAACTTTAAAGGacaaaacacattatttaacCCTGTGAACaagatttacaaaaataatttgatttgctaatgtttttatatacagtatataagctGATTTATAGCACTCAGAACCA

Function

symbol description
slc4a3 Predicted to enable anion:anion antiporter activity and inorganic anion exchanger activity. Acts upstream of or within cardiac muscle cell action potential. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in fin and fin bud. Used to study short QT syndrome. Orthologous to human SLC4A3 (solute carrier family 4 member 3).

GO:

id name namespace
GO:0086001 cardiac muscle cell action potential biological_process
GO:0006811 ion transport biological_process
GO:0006820 anion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005452 inorganic anion exchanger activity molecular_function
GO:0008509 anion transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-141006-1 Predicted to enable anion:anion antiporter activity and inorganic anion exchanger activity. Acts upstream of or within cardiac muscle cell action potential. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in fin and fin bud. Used to study short QT syndrome. Orthologous to human SLC4A3 (solute carrier family 4 member 3).

Ensembl:

ensembl_id ENSDARG00000104005

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073604 True 3300 mRNA 0.47 15 46644633 46684539

Neighbor

gene id symbol gene type direction distance location
XLOC_037413 NA coding upstream 28600 46482929 ~ 46616033 (+)
XLOC_037412 NA coding upstream 213337 46415158 ~ 46431296 (+)
XLOC_037411 NA coding upstream 249229 46378709 ~ 46395404 (+)
XLOC_037410 NA coding upstream 760499 45865267 ~ 45884134 (+)
XLOC_037409 twist2 coding upstream 801154 45839260 ~ 45843479 (+)
XLOC_037415 igfbp2b coding downstream 60809 46745348 ~ 46799620 (+)
XLOC_037416 NA coding downstream 154107 46838646 ~ 46840389 (+)
XLOC_037417 NA coding downstream 170006 46854545 ~ 47322964 (+)
XLOC_037418 gpbar1 coding downstream 1276943 47961482 ~ 47970760 (+)
XLOC_037419 zgc:92380 coding downstream 1322542 48007081 ~ 48039964 (+)
XLOC_037408 BX897692.2 non-coding upstream 823048 45821469 ~ 45821585 (+)
XLOC_037425 NA non-coding downstream 1696316 48380855 ~ 48381572 (+)
XLOC_037427 BX927361.2 non-coding downstream 1998236 48682775 ~ 48687885 (+)
XLOC_037428 NA non-coding downstream 2008893 48693432 ~ 48817119 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_14862429_14898325 SLC4A3 coding CI01000009 null 14861732 ~ 14898549 (+)