LOC110502698 (LOC106612663)


Basic Information

Item Value
gene id LOC110502698
gene name LOC106612663
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 38082120 ~ 38100592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580937.2
CAGAGTGCTTCTCATGTTGAGACACCTCCTTGTCTTTGTTACTTTCAGTTGGCAGATATAAGCTTTTCCTCCAATACGGCTTAACAGTCAGCAGAATACATTGAAAGATGCCGGACTGGGATTTATTGGGAAACTACAAGATACATTTTCTATAACTCATACTTTCAATCGTCCACCATCTGTAACAGGGCTCGCTTAGCCATTGTGATGATGGAATCCGAACAACTCTCCCTGCTGTCCTCCTTGAAAGGAGAGTTGCAGTCTGAGGATTACATTCATCCCCACTATAAGGAGGCTTATCGCCTTGCTATCGATTCCCTGGTGAATGGCGGCAGAGAGAGCTACCAGGAGTTCCTCAAGGCCGAGCGGATAGGGAGCTTTCTCTCAGAAGATGAACTCCACTTCATCACTACAAATGCCTCACAGCCATTGCCTAGCAGCCACACAGAAGAAATCAACGGACCAGCACTGGACACTCCGGCCAGCAAGTCCTCAACTGGGACGTACTGGCCTGTGCACTCAGACATAGTAACACCCGACCTGGAGTTAGGATGGCCGATGGTCATGCATGATAAACTCCAAACCAATATTGATCTGCTTTTCCATCCACCCAGACTAAACAGCCCCACCATCAAAGAGGTGATCCGTAAACAGATTCAGGGTGCCAGACAGGTCATTGCAATAGTAATGGACATTTTTACAGATGTGGATATATTCAAAGAAGCGGTTGATGCCTCCATCAGAGGAACTCCAGTTTATGTGCTTCTGGATGAATTTCATCTGCAAAGCTTTCTCTCAATGGCTGAGAATCAAGACATCCAAATCCCAAAACTTAGGAACATGAGAGTACGCACAGTGAAGGGGCAGGATTACATCTGTCGTTCAGGAGCTACATTTCATGGAGCAATGGAGCAGAAGTTTCTATTGGTGGACTGCCAAACAGTGGTGTACGGATCATACAGCTTCATGTGGTCCTATGAGAAAATCAACCTGAGTATGGTGCAGGTCATAACAGGCCAGCTGGTGGAGTCCTATGACGAGGAGTTTCGAACGCTCTTCGCTCGCTCCTCCATGCCAGCAGTTCTCGCCCCTCCCGAGGGTGTGCTACTAGAAAGGAATGGAAGGAATGCTCTGGCAAAGTATGCTTCTCAATCCAGCCAAGCCTTTGAGAGGAAGGACCAGTTGAGACATACCCTGGACACAGTGTATAGGAAAGCCTGTGAGAGACAGATGGGCATGACGAGCCCtatcagagagatggaggagagacttTATGAGGAGGAGCCATTTCAACACAGACCCATGGTCAATCATGGTGTGAGTGTTCAAAAACACATCCATCAGTTCCAGTCTGCAGAGACTGCAAACTTCCTGAAAAGACACAGTTATGCTGGGGAGAGACAAGAAGTCTTGCATGTTCCACACAACACAAGGTATGGGGCAAGCAACTGGAATGTGGCTGGAGATGAAGGTTATCACTGCGCCCCGGGAAGAAGCCACTTTTCCAATGCTATGGATGACAATTCTCAGGGGGCACAGATGTACAGAGGTCACAATATTCGGCAGTCCTACCACGGAAATGACAAACACGCCCGCTCCATGCAGCAGAACATACCAACTTTGGAGCACACGGCTAAGTCCTTCTTGCGCACATATAGGATAGAGTCTTACCTCAATAACACTGACACTCCTATTGGGGAATCATGTGATTATTTGGACCAGTATGAAGCTCTGGAAAACAAAGCTAGCTCATTCATTCCCTCCAGAGTTAGGTCATCCCTTGTTTTCAAGTCCACTATTCCAGAGCAACCGGAGACAAACAGTTACTCAAAAAACTATTCCATACGTCAGGTCGATTCCTCTGCAAGGCAAAACAATGCAACGTATTACTCATCAATGCAACGGAATCCAGCAACATCAATGGAAAACAGAATGAGACAGGATGAGTTTATAATGAAGAAGCAAAGTCTGCAGATTTTGGATGATCCTAGGAATAACATTGGCTATGGCCCAGGAAGAGACCCACATCAGTCTGTCTATGCCAGCCTGGGCAGAACCAAAGGGGGACTGGTAATCAAAAACCCTGAGCTCCTCCAAGACAACTGGCACAAAAGGCACAGTGTGGCAGACCCAAAGTCCAACATAGACTACAGAGACAATAAAGAGTCCTCCAGTCACATGTATGGTGGAGCCTTTGTGAGGAAACAGGCAGATAGTGGTGGAATAAGAGTGGGTGCACAGAATGGAGGATATTCTTCAAATCTAAATGAGGATCAGAGATCTGTCTCTCAATATGATGTCAAAAACACAGTGGACATAAAGAGACCCCCTCTTTCCATTTGGAAAGAGCCTCCCTCCAGAACTGTGTCTGCAGCAGCCCTTGACATGAACAGCAAAGAGCCCACTTACAAGTCCACCAGTACAGCACTGGGCTCACCTCGTTTCCTCAAGAAGAGCTCCAAGAAAATCAGATCGTTGCTCAACATACCAGAGAAAAAAGAGGGTTCCCCTCTAACCAAGGAAAATGTCATTCCAAAAAGGGGTGGTAGCTCAGACACCATAGTGACTGAGGAAGAAGAACAAagaccaaacagagagaggaaggttgCATCGCACAGTGGCACCACAAATCCAACCAGATCCCCTACCAGGCTAAAGATGGACAAGAACCACTTTGCAGATGATATAGGTAAATCATCAGCCCCTCGTTTCAGCACTGACGAGCTGCAGCAAAACCCTCCAGCCAGAGCTACATCCATTAGGACACAGGGGCAGCCTACTGCCATTGATGAAAGACATGAAAGGGCAAGCCTTGCATCAGGAAACTGGCGTAGCGATCAGGGGGGCAGTAGTCGTTTGTATAGCAGATTTGAGCCTTTCTGCTCATTTGAGAAGAAGCAACCCCACTCCTTACAATCTGCAACAGACCCTGCACCCATACATGCACCAGAGAGGACCAAGAGCATGCACTCTGCTAAAAGTAACTCCAACAATGAACAACACAACCACACTGGCCAACAGACAACTAGCCACCATGAAAACAAACTGGGGAAATTTATACAAAGAGTAGGGAATTTCATTCACAAAAATAAGTAGTAGAAAAGAAAGTTAGCATAGTGAACCAAGCTTACTGGTTGAATGATGACATTCAAAAAAGCAATCAAATTGTTGACAGATTGGAAACAGTGTACTGCACCATTAAACTTGAAAACTGTTCACATGAATAGCTGACATCCTTTCAGGTCTATTTAGAGTAATGGAAAACTGATAATTACTTCAATTAAATATCAATGTTTTGATTATTAGTAACACTTTCTACGAGGCACAAACATACAAGCAGGGTCCGGGACAAGGTATCACGGACAGTGAACTCAAGTCAGAGGACCACAGCTGAATTCAGACCAGCAGAACTGggtcagcagcacagtcaggtgaaCAGGGGACAGGGACAGCCAGGTATCGTCAGATACCAgccaggttgtcctgaggcaCAGTCCTAGGGCTCCGGTCCTGTGGTAGGTGAGACATAGCGAGAGAAATAGAGGTCAATAAGAGGTCAGATGCAGGGAATCTGAGTGGAGAGCCGGCCAAGCAGAGACCACAAGGGGTGCCACTGTCAGACTACGCTCAATCATAGGACTGACAGAAGAGAGAAcctactgggcacagacgtcagttcaataTCTAGCttcatttacatttggttgagttgtcaactaacgtgaaatcaacaaaacctttcaccatgtcattggatttaggtgaaAAGTTGGGTGAATACAATACGAAATCcattacgttgatgacttttttcaaatccaatcagttttccacattgattcaacatcatcacacatacatatatgtatataaaaaaattctgacgtggaaacaacattgattcaaccagttttcaGTCTAAGACAAAAAGAGAAAagctaaaagtgtgtgtgtgcgtgtgtgtgcgtgcgtgtgcgtacgtgtgtgtacaCTGCAGTGAGGAAAACACTGAACACAATTTGTTAAATCGTATTTGCTCCTCGAGTCCATAATCTGTTACATCAAATGAATGAGCCTCATAGAAAGTGTTATCAGATATTTATTTTTTCAAACCCAAAACTAGATCAGCTACTCAAAGGCTGTGATGAGAGACTGAAAGTTAACTGTGTTAGATAGGATCGATTCATTTATTAGGATTAAGTAGCTACAGTAGCTTCATTTCCATATGAAACACATTAAATGTCATCATTCAATTTTAAAAGAGCTGTGATCACAGACagtgcaaaatattttttcacaATATTAGACAAACCTATCCAGGATTTACATTTGCATAATTGGGTGAATgagttcatttttttttttttacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacagcctaggaacagtgggttaactgcctgttcaggggcagaacaacagattcgtacttgtcagctcagggatttgaacttgcaacctttcagttactagtccaatgctcttaccactaggctatcctgccacCCCAGTTTTTGGCATTATTGCAGCATCTGGAGTTGTTTTGATGACTAGCTTTCTTGGTAAAATGCTTTGGCAAAATATGCTTGAAAATAAAGTTATATTTTGTTCTACTGTGCCTGCATGTGTTGTGGATACAGGTGTTGTGAGAAATGTAATGGTACAATGGGACAATTTTAGGGAAATGTACATTGTATGTCTTTGTAAATATAGTTGCTTT

Function

NR:

description
protein FAM83B-like

GO: NA

KEGG:

id description
K23930 FAM83; protein FAM83

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580937.2 True 4765 mRNA 0.44 5 38082120 38100592

Neighbor

gene id symbol gene type direction distance location
LOC110502689 LOC106612792 coding downstream 389924 37682673 ~ 37692196 (-)
LOC110502685 LOC106612807 coding downstream 415808 37662065 ~ 37666312 (-)
prim2 prim2 coding downstream 432156 37542585 ~ 37649964 (-)
si:dkey-103j14.5 LOC106612836 coding downstream 728096 37339267 ~ 37354024 (-)
LOC110502679 LOC106612855 coding downstream 754445 37302808 ~ 37327675 (-)
LOC110502699 LOC106612641 coding upstream 76889 38177481 ~ 38187671 (-)
LOC110502701 LOC106612630 coding upstream 91593 38192185 ~ 38271406 (-)
LOC110503074 NA coding upstream 187214 38287806 ~ 38304066 (-)
LOC110502706 fbx9 coding upstream 308291 38408883 ~ 38416607 (-)
LOC110502709 LOC106589793 coding upstream 338407 38438531 ~ 38451320 (-)
G1862159 NA non-coding downstream 76491 38003849 ~ 38005629 (-)
G1862155 NA non-coding downstream 113332 37964079 ~ 37968788 (-)
G1862101 NA non-coding downstream 192788 37889056 ~ 37889332 (-)
G1862097 LOC106612695 non-coding downstream 198892 37879515 ~ 37883228 (-)
G1862042 NA non-coding downstream 284038 37787631 ~ 37798082 (-)
G1862204 NA non-coding upstream 2631 38103223 ~ 38103447 (-)
G1862209 NA non-coding upstream 4288 38104880 ~ 38105095 (-)
G1862213 NA non-coding upstream 7577 38108169 ~ 38108431 (-)
G1862250 NA non-coding upstream 35039 38135631 ~ 38135905 (-)
G1862271 NA non-coding upstream 55802 38156394 ~ 38156622 (-)
G1861368 NA other downstream 746706 37335027 ~ 37335414 (-)
G1860462 NA other downstream 1630661 36448831 ~ 36451459 (-)
LOC110502661 golga7b other downstream 2122915 35954220 ~ 36014458 (-)
G1859038 NA other downstream 2838531 35243114 ~ 35243589 (-)
G1858636 NA other downstream 3113259 34936689 ~ 34968861 (-)
G1862272 NA other upstream 56157 38156749 ~ 38157209 (-)
G1864033 NA other upstream 1348805 39449397 ~ 39453415 (-)
srsf2a LOC106612293 other upstream 2079237 40179809 ~ 40185223 (-)
G1868010 NA other upstream 4814814 42915406 ~ 42978144 (-)
G1868940 LOC106611807 other upstream 5386276 43486868 ~ 43501433 (-)

Expression


Co-expression Network