LOC110502709 (LOC106589793)


Basic Information

Item Value
gene id LOC110502709
gene name LOC106589793
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 38438531 ~ 38451320 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580956.2
CGTCATCGTTAGTGCTGCTTGCAGAATAGTAGTGATCCCTTCCTACTGCCGAACAGTACACATTGGGACCATAAGCGTATACGTGTGCAAATTTCTAACTAATTTGTTTTACGTTTAAATGAGCAAATACCAGCACTGCAATGGCAATTGACTGGCTTGGATTTGGCTATGCTGCAGCCATAGCCCTGGGGGGATTCATGGGGTACAAGAAAAAAGGTAGTGTCATGTCACTGATAGCTGGGATATTGTTTGGCAGCATGGCCGCCTATGGGGCCTTAATGATTTCATATGACCCAACCAAGACATTCTACTCCCTCGTTGCCTCAGGAGTGCTGACAATAGTGATGGGAATGAGATTCAAGAAATCTGGGAAAATAATGCCAGCTGGCATCATGGCAGGACTAAGTTTGCTGATGGTCCTGCGACTTCTCTTCATGGGCGTGATTGTAATGTGATTTGAACAACACAACTGTCTAAAGTGAGACTGAAAATATCACTGCAAGGGATGAAGTCCCATTTGCACATTGTTTGTGCTTGACAAAATTGTTTTTGTAATGATTTGTTCAATGAATATGggaacagaaatacagtaacatTTACTACTTGATCTGAATAAATGTTATAGCACTGAAGGTATGACTACTTACTTAGACAATCATGTTTAGCTGCCTCACTGTAAATAACCTAATAACTGTTTGATATAAATGATGGAATAGCTCAGAACAGACATGTAGTGTTTAATTACAGCTGATATTTTGTTTaacagacttttttttttttttttttgtatattatTGAAAAACATACTTGTTCTACTTGAACAATTTGGTCCTTACTCATACATGTTATAGATTATTCCAGACTGTCATTTCTTGTATCTAATATTCACTTCAACTCTACATTTTTTCAATAAGCATCAGTGCTTGAAGTTGAACACCTCATACACAGTCTTTACATATAAGTCATCTGGTTGAGGCTTCCTCTTGCTGCCTGGCTGCAGGAACTTCTGAATGGCTGGCAGGCTTTTCATCCTCCCTTGAAAagcctgaaaaaaaaaaaaacattttcacccAATCAAGAATTAATCAAATGAAGTATCTTATGGATCTTTTGACCTTTCTTTCAAATATGCTGCTGACTATGTCCTaattatctctccttcctcccaaagtGTGCCTGGGTTCACTTCCCTTAATcgatttgaaaggaaatgacaGTCAAATAAAtatgcctccaccaatccaatgtttTTAGATTTGTGGGAAGTAGTGAACGAGGGCATACTTGAGAGATTATTGGGACACACACAGGCTGTTGCAGCAGTACAGTACATTTAAAAATAGACAGCGTGTTGTAGCAGTACATTTGAAACGGTATCGCCAGACTTATGTTTATCTGTATGAAAATGTGCAGCAGGTATGCAATATTCATATGCTTTTTGGGTTATGTGAACCTGTAACATGTTTTGATGAGATGCACTTAAAATGTATCAAGACTTGTCTCATAACTTATTTTGTCAAGAACAAAATACATTTGTAATAAACTTTACCTTAACAACAGGGAA
>TU2131383
TAGTGATCCCTTCCTACTGCCGAACAGTACACATTGGGACCATAAGCGTATACGTGTGCAAATTTCTAACTAATTTGTTTTACGTTTAAATGAGCAAATACCAGCACTGCAATGGCAATTGACTGGCTTGGATTTGGCTATGCTGCAGCCATAGCCCTGGGGGGATTCATGGGGTACAAGAAAAAAGGTAGTGTCATGTCACTGATAGCTGGGATATTGTTTGGCAGCATGGCCGCCTATGGGGCCTTAATGATTTCATATGACCCAACCAAGACATTCTACTCCCTCGTTGCCTCAGGAGTGCTGACAATAGTGATGGGAATGAGATTCAAGAAATCTGGGAAAATAATGCCAGCTGGCATCATGGCAGGACTAAGTTTGCTGATGGTCCTGCGACTTCTCTTCATGGGCGTGATTGTAATGTGATTTGAACAACACAACTGTCTAAAGTGAGACTGAAAATATCACTGCAAGGGATGAAGTCCCATTTGCACATTGTTTGTGCTTGACAAAATTGTTTTTGTAATGATTTGTTCAATGAATATGggaacagaaatacagtaacatTTACTACTTGATCTGAATAAATGTTATAGCACTGAAGGTATGACTACTTACTTAGACAATCATGTTTAGCTGCCTCACTGTAAATAACCTAATAACTGTTTGATATAAATGATGGAATAGCTCAGAACAGACATGTAGTGTTTAATTACAGCTGATATTTTGTTTaacagacttttttttttttttttttgtatattatTGAAAAACATACTTGTTCTACTTGAACAATTTGGTCCTTACTCATACATGTTATAGATTATTCCAGACTGTCATTTCTTGTATCTAATATTCACTTCAACTCTACATTTTTTCAATAAGCATCAGTGCTTGAAGTTGAACACCTCATACACAGTCTTTACATATAAGTCATCTGGTTGAGGCTTCCTCTTGCTGCCTGGCTGCAGGAACTTCTGAATGGCTGGCAGGCTTTTCATCCTCCCTTGAAAagcctgaaaaaaaaaaaaacattttcacccAATCAAGAATTAATCAAATGAAGTATCTTATGGATCTTTTGACCTTTCTTTCAAATATGCTGCTGACTATGTCCTaattatctctccttcctcccaaagtGTGCCTGGGTTCACTTCCCTTAATcgatttgaaaggaaatgacaGTCAAATAAAtatgcctccaccaatccaatgtttTTAGATTTGTGGGAAGTAGTGAACGAGGGCATACTTGAGAGATTATTGGGACACACACAGGCTGTTGCAGCAGTACAGTACATTTAAAAATAGACAGCGTGTTGTAGCAGTACATTTGAAACGGTATCGCCAGACTTATGTTTATCTGTATGAAAATGTGCAGCAGGTATGCAATATTCATATGCTTTTTGGGTTATGTGAACCTGTAACATGTTTTGATGAGATGCACTTAAAATGTATCAAGACTTGTCTCATAACTTATTTTGTCAAGAACAAAATACATTTGTAATAAACTTTACCTTAACAACAGGGAATTTGGAGAGAATTGTAGGAAATTTCTCCTCCAACATCAAGGTGATTTCAAGTAGCTGGACATCAGCACAGCTCAACTGATAACCCACCAGGTACTGGGAGCTAGCAAGAGCCTGTAAGAAATCAGCACACACCCTCACATTAGACAATACATAAACTTGTACAGACGTGCCAACCTTTTCACTTAGCAGACATGGTATTTCGCAATGATAATAAAACTGCTTAGATTCAGGTTACTTTAGTGAGCTCTACCCTTCCCAGCTGGCCAAGGCCCAAAGCATGCAGTACCTTTTCGAACACGGGAATGTAGCGGCTTGTAGCTTTCCTCTCAATGTCATCCAGTTTAGTTTTCTTGGCGTCAGGTGAAATGAATGGCAACATCATTATCATTTCCATCAAGTCCCTCACACCTTCAGAATACATGTCAATCCTAAAGGTAAATGAAAACCAAACCCTTATCAGAATTCCCC

Function

NR:

description
transmembrane protein 14A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580956.2 False 1564 mRNA 0.38 5 38438999 38451320
TU2131383 True 2003 lncRNA 0.39 5 38438531 38451291

Neighbor

gene id symbol gene type direction distance location
LOC110502706 fbx9 coding downstream 22392 38408883 ~ 38416607 (-)
LOC110503074 NA coding downstream 134933 38287806 ~ 38304066 (-)
LOC110502701 LOC106612630 coding downstream 167593 38192185 ~ 38271406 (-)
LOC110502699 LOC106612641 coding downstream 251328 38177481 ~ 38187671 (-)
LOC110502698 LOC106612663 coding downstream 338407 38082120 ~ 38100592 (-)
LOC110502710 LOC106612554 coding upstream 25803 38477123 ~ 38533846 (-)
mcph1 mcph1 coding upstream 84814 38536134 ~ 38585926 (-)
myom2b LOC106612511 coding upstream 907743 39359063 ~ 39384164 (-)
LOC110502717 LOC106612488 coding upstream 1006452 39457772 ~ 39473633 (-)
irf1a LOC106612476 coding upstream 1062982 39514302 ~ 39517763 (-)
G1862678 NA non-coding downstream 3309 38435402 ~ 38435690 (-)
G1862675 NA non-coding downstream 5217 38432769 ~ 38433782 (-)
G1862672 NA non-coding downstream 7569 38431215 ~ 38431430 (-)
G1862668 NA non-coding downstream 9653 38428390 ~ 38429346 (-)
G1862662 NA non-coding downstream 30756 38405887 ~ 38408243 (-)
G1862683 NA non-coding upstream 7271 38458591 ~ 38458874 (-)
G1862686 NA non-coding upstream 10181 38461501 ~ 38461720 (-)
G1862698 NA non-coding upstream 24269 38475589 ~ 38475888 (-)
G1862704 LOC106613263 non-coding upstream 38029 38489349 ~ 38489661 (-)
G1862707 NA non-coding upstream 39889 38491209 ~ 38491467 (-)
G1862272 NA other downstream 281790 38156749 ~ 38157209 (-)
G1861368 NA other downstream 1103585 37335027 ~ 37335414 (-)
G1860462 NA other downstream 1987540 36448831 ~ 36451459 (-)
LOC110502661 golga7b other downstream 2479794 35954220 ~ 36014458 (-)
G1859038 NA other downstream 3195410 35243114 ~ 35243589 (-)
G1864033 NA other upstream 998077 39449397 ~ 39453415 (-)
srsf2a LOC106612293 other upstream 1728509 40179809 ~ 40185223 (-)
G1868010 NA other upstream 4464086 42915406 ~ 42978144 (-)
G1868940 LOC106611807 other upstream 5035548 43486868 ~ 43501433 (-)
G1872165 NA other upstream 7576600 46027920 ~ 46029807 (-)

Expression


Co-expression Network