XLOC_037416



Basic Information


Item Value
gene id XLOC_037416
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 46838646 ~ 46840389 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00075199
AACTGTAACAGAACAACTGCAAAGTAACGATTTTGTTCTGTCTCTTATCTGTCTGGAGAATCCTGCAGGGCACAAAATTTGAGGCTGCACTTTGGAACCACATCTGAACCTGTGCTGCAGGCAAGAAATTAGGCACCTTTTGTTCTCCTTCCCTGAAGAAACGTGACACTGCGGCTCCCCCTCCACCGCCCCAGAGCACATGACAGGAGGTTTCAACAGGTCGGCGTCTTCTGCTGAACCACATGGTCTGCTTACAGTCTGTGTGTTTAATTTTCCAAACGTGAGTCGTAAACCCATAGATTAAATAGATTGTTTTTGTGCGTTCGCTGTTTTGGTCAGCCTAACATGTGTTCCTATTTAAGCAGGGCCCAGCGTGAGGATGTCGCAGGCCAGGAATCACATTTCTGACAGAGATGAGACTACTGTGCGAGCTGATTTCCTTCACAGCTGTTACTCGCTAGCTTTCCAGGTGCCAATGACAAATACACGCGGGACAGATTGCTGTTAAACTTTACTGGAAGAAGGCATTCAAGCGTGCCAAATAGGTTCCCTGCTTGCATACCTTTGCAAAGGATGACTGGGCATTTGATATACGAGCGCTTTAGACTTGGTTTGGGATTATGCTGCAAATAATGTACACAAGGTCTAAAAAGTGCGAATCTCTTTTCGGTTTGCTGTATATCTTTCAATTTCAGTCTGATGATGCAAGCAAGTATATGATTATGAGTTTGGCCTGTGGCGCAATATAAAAATGAGATGACAGACAGGCAAGAGACGAACAACTGCGTTCCATTCATTTGTAATTGTTGTTTAGTTATGGCTGTATCTCTAGCGGGTAAATATAACACATAAATTAACCAAACGCAACAGCCAAGTTCTTTTGGCACAGCTCTTTGGGTTTGTTTATTTGTACGCAATTATATTCGGACATGAAATTGTTGAAGGCGAAAAGCCTGTAGTCATATCTGTCCAAGTTTCACACAGCGTGTCCGAGCAGAAAGTCTCCCTTGAGATCATTGGCAAATCGGCAGAATTTGCCAATCCTGGAGCTAAATGACAGTCTGGCATCACCTATTGTACTTGGCTCGAAATGTTAAATCTTTAAACTGTGAGTGCCAGAATTCAAGCCTATGAAGGTATTTCAATGCTATGTTTGTATAACTGTGCGTATTGGGGGAATAAAAATGGATCAGGAGGACAGCGAGCCAAAAGTCTCTGAATCCTAATGCGGGCAAGGACGCTTGacctctctccctctttctctccctctctccgtCTGTCCTGCCCAGCTAGTAAAACCACGCTGAAACCGAATACCACAGGAGGCTAGAAGCGTCCCTCTAAATTCATCCCCATGCTTGACGAACAGCTCTTGATAGATTGGCTCCACAGACATTCTGCTGAATCACAAGGGCTCGACTGTGTGCCCACTGCAATCACCGAAGGGGTAAACCAGCAACCGCACTCATCAGAGACCTTCAGATTGAGACAAACAGGTTTCTGCACCTGTGTGTGAGGGGGTtgtatttgtgtacaaatgttcAACCATTTCAAAGTCTAATACGTGAAGTCTACAAGGCAGTTCTGTATACTCATGTGGCGCTTCTGTTCGTGTAGCTCAACTAGTAGAGCACTGAGCTGTGAACCCTGAAGCTGAGAGTTCGAATCCCAGGGAGAGCATGAATAGAAGCATCTGTCAAATGCATACATGTAAATAAACATGCACGCTGTGCACAATTTCTCT

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00075199 True 1744 lncRNA 0.45 1 46838646 46840389
Loading

Neighbor


gene id symbol gene type direction distance location
XLOC_037415 igfbp2b coding upstream 39026 46745348 ~ 46799620 (+)
XLOC_037414 slc4a3 coding upstream 154107 46644633 ~ 46684539 (+)
XLOC_037413 NA coding upstream 222613 46482929 ~ 46616033 (+)
XLOC_037412 NA coding upstream 407350 46415158 ~ 46431296 (+)
XLOC_037411 NA coding upstream 443242 46378709 ~ 46395404 (+)
XLOC_037417 NA coding downstream 14156 46854545 ~ 47322964 (+)
XLOC_037418 gpbar1 coding downstream 1121093 47961482 ~ 47970760 (+)
XLOC_037419 zgc:92380 coding downstream 1166692 48007081 ~ 48039964 (+)
XLOC_037420 cxcr1 coding downstream 1244650 48085039 ~ 48091741 (+)
XLOC_037421 cxcr2 coding downstream 1267785 48108174 ~ 48109197 (+)
XLOC_037410 NA non-coding upstream 954512 45865267 ~ 45884134 (+)
XLOC_037408 BX897692.2 non-coding upstream 1017061 45821469 ~ 45821585 (+)
XLOC_037425 NA non-coding downstream 1540466 48380855 ~ 48381572 (+)
XLOC_037427 BX927361.2 non-coding downstream 1842386 48682775 ~ 48687885 (+)
XLOC_037428 NA non-coding downstream 1853043 48693432 ~ 48817119 (+)
XLOC_037430 NA non-coding downstream 2005189 48845578 ~ 48858403 (+)

Expression


Expression of XLOC_037416 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.25.
End of interactive chart.

Expression of XLOC_037416 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.25.
End of interactive chart.

Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_14974529_14974816 NA coding CI01000009 null 14974042 ~ 14975420 (-)