irf1a (LOC106612476)


Basic Information

Item Value
gene id irf1a
gene name LOC106612476
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 39514302 ~ 39517763 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580977.2
atactttttctttccACTGTACATAGAGGAGGGGCCTTAAAGGGTGCTGTGTGGGTGTAATATAGTTTCCTTGAAATTACAATGCACTTCTCAGGAAACCTAGCTACCTGTCAGTGTGTGCACCGGTAGTTTAAGGAAACCCGTCAGTGTGAGCACACAGGAGGTTTGAGGATTCCATGCGCAGGTGTGAAGTCAGGCAGACTGCAACCCTAGGTTCATTAGAAGATGCATCAAGGTCGTCTAAGACTGCGACCCTGGCTTGAGGAGCAGATACAGTCAGGGAAATACCCAGGGGTCACCTGGCGTGATGAGACAGCTCAAGTTTTTCAGATTCCTTGGAAGCATGCGGCTCGACATGGTTGGAATATAGACAAGGACGCCACTTTGTTCCGAAACTGGGCGATACACACAGGCAGATACAAACCTGGAATAGACAAGCCTGATCCGAAGACATGGAAAGCCAACTTCCGATGTGCCCTGAACTCTTTACCCGATGTGAAAGAGCTACAAGACAAGAGCATCAAGAAGGGCAGTAATGCTTTCAGGGTTTACATGATGCTGCCTGTTATTAAAATGACCAAACAAAGAAAAGGACTAAAGGAGTCAGATGTTGCCATAAAACAAAGTCTGATCTCCCTCTCAGAAACTCACACGGGTTCTTGTGCGCCACTGGATAGATTTGCAGAGGTTTTCCTGAAGTATAGAGGTGGGCAGGCCAGTCACAGCCCTGGTATATTTCATGTCAATGACAATTACCCTCCCTACAACACCATAAAGGATGAACAGTCACCAGAACAGTCCTACTCTCACCAGTCATCCTTAACACCTGAAGTGCATGAAAGATCTGATACTACCACTGACGACAATGAGCAAGCAGAGGCTGTATTCAAGATAGTTGATCACCTAAAAACCATAGAGCACTGGAGCCAGTCTAATGAAAACAGAAGCTGGAGGGCAGCAGCCAACGGCTGGGTGGACTGTTACTGTGAGGATATGGATTACTTGGGGTATCCTGTACAGACCGATTgctacacacacagtgcacagcAAAGACCACTTCTATAAGACGAGTGGGAGCAACATGCATCTAACAGACTGCCATGCTAAAATCCCTGAAAAAGGTGGAGACATTTCTCTTCCAAGCCAAGCCCAATTATATAATGCTGTATTCAGATGAACTGTAAGACTCTGACCAAGCAGTtgagcacatacagtacattaaaaACTGAGTTAATCACATTAAGCTGAACTGTCATTGTAGAATAGATTTTTTCCCCCTAAAATGTTTGCCTTTTATTAAACTTAAATTGACAAAAGG

Function

NR:

description
interferon regulatory factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580977.2 True 1318 mRNA 0.45 9 39514302 39517763

Neighbor

gene id symbol gene type direction distance location
LOC110502717 LOC106612488 coding downstream 40669 39457772 ~ 39473633 (-)
myom2b LOC106612511 coding downstream 130138 39359063 ~ 39384164 (-)
mcph1 mcph1 coding downstream 928376 38536134 ~ 38585926 (-)
LOC110502710 LOC106612554 coding downstream 980456 38477123 ~ 38533846 (-)
LOC110502709 LOC106589793 coding downstream 1062982 38438531 ~ 38451320 (-)
tacr2 LOC106612452 coding upstream 143152 39660915 ~ 39666026 (-)
hnrnph3 hnrh3 coding upstream 249028 39766791 ~ 39772600 (-)
dna2 dna2 coding upstream 259619 39777382 ~ 39811785 (-)
LOC110502743 LOC106612385 coding upstream 429721 39947484 ~ 39958097 (-)
LOC110502744 LOC106612365 coding upstream 490620 40008383 ~ 40072508 (-)
G1864032 NA non-coding downstream 63306 39445519 ~ 39450996 (-)
G1864068 LOC106612512 non-coding downstream 81443 39431458 ~ 39432859 (-)
G1864039 NA non-coding downstream 119856 39393281 ~ 39394446 (-)
G1863977 NA non-coding downstream 235155 39278898 ~ 39279147 (-)
G1863654 NA non-coding downstream 297695 39216354 ~ 39216607 (-)
G1864091 NA non-coding upstream 981 39518744 ~ 39521699 (-)
G1864107 NA non-coding upstream 57413 39575176 ~ 39576072 (-)
G1864106 NA non-coding upstream 59057 39576820 ~ 39577358 (-)
G1864127 NA non-coding upstream 78018 39595781 ~ 39609326 (-)
G1864134 NA non-coding upstream 92808 39610571 ~ 39611460 (-)
G1864033 NA other downstream 60887 39449397 ~ 39453415 (-)
G1862272 NA other downstream 1357093 38156749 ~ 38157209 (-)
G1861368 NA other downstream 2178888 37335027 ~ 37335414 (-)
G1860462 NA other downstream 3062843 36448831 ~ 36451459 (-)
LOC110502661 golga7b other downstream 3555097 35954220 ~ 36014458 (-)
srsf2a LOC106612293 other upstream 662066 40179809 ~ 40185223 (-)
G1868010 NA other upstream 3397643 42915406 ~ 42978144 (-)
G1868940 LOC106611807 other upstream 3969105 43486868 ~ 43501433 (-)
G1872165 NA other upstream 6510157 46027920 ~ 46029807 (-)
G1872556 NA other upstream 7279472 46797235 ~ 46797650 (-)

Expression


Co-expression Network