XLOC_037417


Basic Information

Item Value
gene id XLOC_037417
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 46854545 ~ 47322964 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075200
CCCACACATCcaaccagcaggtggcagtaatgcacctAGAAGTTGTAAACCAATAACCAATAAACCTTatatgaagaagaagaagaagaagtgacATAATTTTAGAGGAAAAGCAGCAGTGCCCACACCTGTTAACACAATACTCCGATAAGAGTGCCAATCATCTATGTAAATTGCATACCATATTCCTGCGGGATGTCCCATTTGCCAAACGAATCGGCTGTTCGGAAAACTGCTTCCTCGGTTACCACAGCAACCGaCCTCGCCAGTATGAACCAACATCTAATTTCTTTGCATGGAAAAGATCACTTCTGATATTCCGCCTGACATCTCTTATTGTGCTTCACGGAAGAAAGAAATTTATTCGGGATAGAGCTGATGGTCggAAATCTGCAAAGTGGACTCCACACCACAGGATTAGTATGCTGGCTTTAAGAAAATACTGAAAAGCAGAAGAAAAACTCAAAACTGGTCTATCAAGGCCAAAATACACAGAGGTCCTATTCCCGTGCCTGTGAATAGTGGAATTGACAGATCTGCGCTGGACTGCAGGATTTGGACGATTGCTTGAAGATGCAATAAAAGATTAGCAACATGAGGCACCCAGCTTCAAGAAACATCAATACCAGCAGGCCATGATGTTGGACTTCTCTTATCAAGCTGAATAACACCTGGAGGGAAACTTTTAACACACTTCACTTAACTCAATCCTCATCAAATCTAAATGCGTCTGGCACAAAGAGTCTGTCTTCTGGATCCTTCTTTGCCGAGCCATGAGTCTATTAATGGCACTCCAAGGAAAACAGGTTTGGAGACCAAACAGGAAAGCGCTGGATTTGAACCAGTTTCTATGGCAGGTCGGCGTAAAGCTTAGCCTTGCAACCCTGGACATCTGGCACCTGCACAACAGAGGACAGGAGATAGAGA
>TCONS_00075201
tccaaacacATACGCTGTAAGTTAttgggaCCTCGCCAGTATGAACCAACATCTAATTTCTTTGCATGGAAAAGATCACTTCTGATATTCCGCCTGACATCTCTTATTGTGCTTCACGGAAGAAAGAAATTTATTCGGGATAGAGCTGATGGTCggAAATCTGCAAAGTGGACTCCACACCACAGGATTAGTATGCTGGCTTTAAGAAAATACTGAAAAGCAGAAGAAAAACTCAAAACTGGTCTATCAAGGCCAAAATACACAGAGGTCCTATTCCCGTGCCTGTGAATAGTGGAATTGACAGATCTGCGCTGGACTGCAGGATTTGGACGATTGCTTGAAGATGCAATAAAAGATTAGCAACATGAGGCACCCAGCTTCAAGAAACATCAATACCAGCAGGTCGGCGTAAAGCTTAGCCTTGCAACCCTGGACATCTGGCACCTGCACAACAGAGGACAGGAGATAGAGA
>TCONS_00074936
CTTGTGAGGATTGTTGATGTGTTTGGGCCTGAAAACAGCCAGAACACACATTATCTGTTTAaattatgcaataaataaataaataaataataataagattttgCTGGGGATccacaatttatttagttttccaCTTATATAAACTCCACTGGACTGAACTTATCCCTCATCACTGGTTTTGTTCCATCTGCCCCCTGGTACATCCTAACAGAAATCTGCAAAGTGGACTCCACACCACAGGATTAGTATGCTGGCTTTAAGAAAATACTGAAAAGCAGAAGAAAAACTCAAAACTGGTCTATCAAGGCCAAAATACACAGAGGTCCTATTCCCGTGCCTGTGAATAGTGGAATTGACAGATCTGCGCTGGACTGCAGGATTTGGACGATTGCTTGAAGATGCAATAAAAGATTAGCAACATGAGGCACCCAGCTTCAAGAAACATCAATACCAGCAGGTGGGTCATTATCATTTCTCAACATGCTGGT
>TCONS_00075202
TGAGGATTGTTGATGTGTTTGGGCCTGAAAACAGCCAGAACACACATTATCTGTTTAaattatgcaataaataaataaataaataataataagattttgCTGGGGATccacaatttatttagttttccaCTTATATAAACTCCACTGGACTGAACTTATCCCTCATCACTGGTTTTGTTCCATCTGCCCCCTGGTACATCCTAACAGAAATCTGCAAAGTGGACTCCACACCACAGGATTAGTATGCTGGCTTTAAGAAAATACTGAAAAGCAGAAGAAAAACTCAAAACTGGTCTATCAAGGCCAAAATACACAGAGGTCCTATTCCCGTGCCTGTGAATAGTGGAATTGACAGATCTGCGCTGGACTGCAGGATTTGGACGATTGCTTGAAGATGCAATAAAAGATTAGCAACATGAGGCACCCAGCTTCAAGAAACATCAATACCAGCAGGTCGGCGTAAAGCTTAGCCTTGCAACCCTGGACATCTGGCACCTGCACAACAGAGGACAGGAGATAGAGA
>TCONS_00075203
TGAGGATTGTTGATGTGTTTGGGCCTGAAAACAGCCAGAACACACATTATCTGTTTAaattatgcaataaataaataaataaataataataagattttgCTGGGGATccacaatttatttagttttccaCTTATATAAACTCCACTGGACTGAACTTATCCCTCATCACTGGTTTTGTTCCATCTGCCCCCTGGTACATCCTAACAGAAATCTGCAAAGTGGACTCCACACCACAGGATTAGTATGCTGGCTTTAAGAAAATACTGAAAAGCAGAAGAAAAACTCAAAACTGGTCTATCAAGGCCAAAATACACAGAGGTCCTATTCCCGTGCCTGTGAATAGTGGAATTGACAGATCTGCGCTGGACTGCAGGATTTGGACGATTGCTTGAAGATGCAATAAAAGATTAGCAACATGAGGCACCCAGCTTCAAGAAACATCAATACCAGCAGGCCATGATGTTGGACTTCTCTTATCAAGCTGAATAACACCTGGAGGGAAACTTTTAACACACTTCACTTAACTCAATCCTCATCAAATCTAAATGCGTCTGGCACAAAGAGTCTGTCTTCTGGATCCTTCTTTGCCGAGCCATGAGTCTATTAATGGCACTCCAAGGAAAACAGGTTTGGAGACCAAACAGGAAAGCGCTGGATTTGAACCAGTTTCTATGGCAGGTCGGCGTAAAGCTTAGCCTTGCAACCCTGGACATCTGGCACCTGCACAACAGAGGACAGGAGATAGAGATTGTGTACAGATGTGTCTTGTGCATGGCCAGGATGACAATGgtctgtgggaggaaaccggagtgcCCGGAGAAAatccatgcaaacatggggagaacatgcaaacttcacagagaAATGC
>TCONS_00075204
TTGTTGATGTGTTTGGGCCTGAAAACAGCCAGAACACACATTATCTGTTTAaattatgcaataaataaataaataaataataataagattttgCTGGGGATccacaatttatttagttttccaCTTATATAAACTCCACTGGACTGAACTTATCCCTCATCACTGGTTTTGTTCCATCTGCCCCCTGGTACATCCTAACAGAAATCTGCAAAGTGGACTCCACACCACAGGATTAGTATGCTGGCTTTAAGAAAATACTGAAAAGCAGAAGAAAAACTCAAAACTGGTCTATCAAGGCCAAAATACACAGAGGTCCTATTCCCGTGCCTGTGAATAGTGGAATTGACAGATCTGCGCTGGACTGCAGGATTTGGACGATTGCTTGAAGATGCAATAAAAGATTAGCAACATGAGGCACCCAGCTTCAAGAAACATCAATACCAGCAGGAGTGAACTCTGAACTCTGTGAACtgctgatctgtgtttctgaacaGACGCTCTGTGGTTTGAGGAGAGCCGATATCGGGCTGACTCTGGATCTGTCTGTCTCATTTGTCGGGCGAGCGCTATAGGGAACTGTAAAGCTCCTCTGACTGCGGTCTGCGATGCTGTGTTGACCCCGCGCTGAACTCTGCATTGTGGATTTGTTATTGGAAACACCCCTCTGATGCTCTTTTTAAGGCTGTGTGAAGATGAAAAGGTTACGCACTGCTTTCACATCCAATTCCAACAGCAGATCCGCAGTGGTCTGCTGTGACCATACACGACTGCTGCTGAGATGCCTGACGCTTCAGTGAAAATTCACAGTCAAATCTCTTTTATTTCTCAAATGTTTCTAATAGAGATCGATGAGAGTAAATGGagagtgttttatttttcagagttgaagtttgtGCTGCTGCAATTTGCCAAGATCTAAAATTGAAAAGCc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075200 False 927 lncRNA 0.44 6 46854545 47316207
TCONS_00075201 False 472 lncRNA 0.44 4 46992570 47316207
TCONS_00074936 False 488 lncRNA 0.40 2 47148495 47156750
TCONS_00075202 False 523 lncRNA 0.41 3 47148499 47316207
TCONS_00075203 False 868 lncRNA 0.43 6 47148499 47322964
TCONS_00075204 True 931 lncRNA 0.42 3 47148505 47194696

Neighbor

gene id symbol gene type direction distance location
XLOC_037416 NA coding upstream 14156 46838646 ~ 46840389 (+)
XLOC_037415 igfbp2b coding upstream 54925 46745348 ~ 46799620 (+)
XLOC_037414 slc4a3 coding upstream 170006 46644633 ~ 46684539 (+)
XLOC_037413 NA coding upstream 238512 46482929 ~ 46616033 (+)
XLOC_037412 NA coding upstream 423249 46415158 ~ 46431296 (+)
XLOC_037418 gpbar1 coding downstream 638518 47961482 ~ 47970760 (+)
XLOC_037419 zgc:92380 coding downstream 684117 48007081 ~ 48039964 (+)
XLOC_037420 cxcr1 coding downstream 762075 48085039 ~ 48091741 (+)
XLOC_037421 cxcr2 coding downstream 785210 48108174 ~ 48109197 (+)
XLOC_037422 mettl5 coding downstream 800038 48123002 ~ 48135809 (+)
XLOC_037411 NA non-coding upstream 459141 46378709 ~ 46395404 (+)
XLOC_037410 NA non-coding upstream 970411 45865267 ~ 45884134 (+)
XLOC_037425 NA non-coding downstream 1057891 48380855 ~ 48381572 (+)
XLOC_037427 BX927361.2 non-coding downstream 1359811 48682775 ~ 48687885 (+)
XLOC_037428 NA non-coding downstream 1370468 48693432 ~ 48817119 (+)
XLOC_037430 NA non-coding downstream 1522614 48845578 ~ 48858403 (+)
XLOC_037431 NA non-coding downstream 1546932 48869896 ~ 48877349 (+)

Expression


Co-expression Network