XLOC_037418 (gpbar1)


Basic Information

Item Value
gene id XLOC_037418
gene name gpbar1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 47961482 ~ 47970760 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073606
TAAACTCTGGCCACTTTTATGACAGAAATACACAATTAGATATCAGCATTGCATGTTTTCATGCCTCCCACATCTATCTCATAAATAAAGTGTAAACTGTGGTTTCCTGAGTTGAAATACCTCACCGGAGATGCTTCATGAGAGAGAATGAGGtcactgtctctttaagaagcATCCTGCTGGAGCGCCTGCTCTTTGACTTGAGTTCACATCTCGGTCCGCAAACACTCGAGAGAGGAGAAAAACACAGAGAGAGTTCACATGTGAAAGGATACTCGTGGACTCGCTGATTCACGCATGGAGGGAAAAATCGCATGACAATCTGCTGGATGAAGATTGACTTTCATATGGACTCACCCTTACAGCAGATGGAGACGGCTTAACCATCATGGATCCAGAGGACAAACTGAGCAGAGAAAAGCTGATCTTCTATCTCACAGTCCCACTTTCCTCCATCATCATCTTCACCAACCTCTTCATCATAATCGGCATTGCATGCAACCGGCAGCTCCACAACACTCCCAATTACTTCTTCTTGAGTCTCCTGGTGGCCGATTTATGCACGGGCATCACGCTTCCCTTCATTCCCCGCATGAGCCTGGACCGACAGCTGGATTTCAGACACTGCCTGGTCATGTACATCTTTCCCAACTTTCTGTTCCTGTCATTCCTGTTCAATTTGGTGATGGTGCATTACGAGCGCTACCTCTGCATCGTCAGCCCGCTCCATCACAGTCAGTTCTGGGTTCATCGATGTTTCCCGTTGGCGCTATTGACGGTTTGGCTTCCTCCATTGCTTTACGCATCACTTCCTGCTTTTGGATGGAACAACTGGATTGAAGCAGCATCCAATAAGAGTTTAGACTCGAACGAGACGTTTTGGAGATCACAAACTTCTCATAACGCTTCCAAAGAGGATGAGGTCTGCTCCTACAAACAGGTTTTTCCCAAAGCCTTCATTTATGTGGAAGTTTGTGGACTGGTGTTGCCGGCAATGCTGTGCATCGTGTGCATGACAGGACGGGTGTTATGGATCGCGCGCAAACAGCTGCAGGACATCTGTAAACTCCACCGTGCCGTAGATCGCTTACAAACATCAGACCAAGAGCAGCAGCTGAATCTGCGATACGCCAAATGTGTGGCCGCCGTGTCGCTTACGTTTTTGGTGTGTTGGGTGCCGTATATCATCTACCAGCTGATGTCAGTGACGGCTCTGCAGAGCGGCGTCAGCTTGCCCAGCTCCTCTTTATATATCATCATGTCCTGCACGGGGATCGGGAGCATGGCAGTCATCCCGTTGATCTTGGGACTAGCCAACAAGCAGTACACGGAGCCCATCAGAAGAGTGATGCTGAAACTGAGGAACCGCTGGAGAGGAGGACATAGTGATAGAGATATTACAATTTGA
>TCONS_00073607
AAAACACAGAGAGAGTTCACATGTGAAAGGATACTCGTGGACTCGCTGATTCACGCATGGAGGGAAAAATCGCATGACAATCTGCTGGATGAAGATTGACTTTCATATGATGTTTTCAGGACTCACCCTTACAGCAGATGGAGACGGCTTAACCATCATGGATCCAGAGGACAAACTGAGCAGAGAAAAGCTGATCTTCTATCTCACAGTCCCACTTTCCTCCATCATCATCTTCACCAACCTCTTCATCATAATCGGCATTGCATGCAACCGGCAGCTCCACAACACTCCCAATTACTTCTTCTTGAGTCTCCTGGTGGCCGATTTATGCACGGGCATCACGCTTCCCTTCATTCCCCGCATGAGCCTGGACCGACAGCTGGATTTCAGACACTGCCTGGTCATGTACATCTTTCCCAACTTTCTGTTCCTGTCATTCCTGTTCAATTTGGTGATGGTGCATTACGAGCGCTACCTCTGCATCGTCAGCCCGCTCCATCACAGTCAGTTCTGGGTTCATCGATGTTTCCCGTTGGCGCTATTGACGGTTTGGCTTCCTCCATTGCTTTACGCATCACTTCCTGCTTTTGGATGGAACAAC
>TCONS_00073608
ccctaacctgtctagttaacctaattaagcatttaaatgtcactttaagctgtatagaagcgtcttgaaaaatatctagccaaatagtatttacagtcatcatggcaaagataaaataaatcagctattagagagttattaaaactattgtgtttagaaatgtgttgaaaagatcctctctctgttaaaaagaaattggggaaaaaataaatgggggctaataattctgacttcaactgtatgcatatgtatgtatgtatatatatttatttatatatatatatatatatatatatatatatatagagagagagagagagagagagagagattctatgagtttttttttacaaattgatgATTCAATAACATACACAGTTTGTTTAATACATGCTTCagttaattaaatttatgtatttatttaaataacatctaacttattaataaattttttatacgTTTTTCGGTGTTTTGTGGGATATTTCCAGTATCCTATCCTCTGATTGGCGATTTCAGACATCACTCAAGTCAAGCTATACAAACTACagatctaatttgactttacttttaggcaTTACGGAGAATCAAACACCCATTTAATAAGAAAACAGTCCTGTGAACACTTACAGTCAATCGCCAGTCAGAGGGGATCAAGCTTTAATTAAGGGGGGTCAGGCCTCCCCAAACCCCCTATTATTCTACCCCGATTAAGCCACAtctcctttttttaaaaatcatacattttcatacaaatgaATCGtatgaacttgtacaaattagtCAACAATACGTAAAATAGTTGTGCTTCCTCGTGAGATTAAGTTGGCAAGACCCATTGACTGTGCGGTTCCTATGTTTTCAGGACTCACCCTTACAGCAGATGGAGACGGCTTAACCATCATGGATCCAGAGGACAAACTGAGCAGAGAAAAGCTGATCTTCTATCTCACAGTCCCACTTTCCTCCATCATCATCTTCACCAACCTCTTCATCATAATCGGCATTGCATGCAACCGGCAGCTCCACAACACTCCCAATTACTTCTTCTTGAGTCTCCTGGTGGCCGATTTATGCACGGGCATCACGCTTCCCTTCATTCCCCGCATGAGCCTGGACCGACAGCTGGATTTCAGACACTGCCTGGTCATGTACATCTTTCCCAACTTTCTGTTCCTGTCATTCCTGTTCAATTTGGTGATGGTGCATTACGAGCGCTACCTCTGCATCGTCAGCCCGCTCCATCACAGTCAGTTCTGGGTTCATCGATGTTTCCCGTTGGCGCTATTGACGGTTTGGCTTCCTCCATTGCTTTACGCATCACTTCCTGCTTTTGGATGGAACAACTGGATTGAAGCAGCATCCAATAAGAGTTTAGACTCGAACGAGACGTTTTGGAGATCACAAACTTCTCATAACGCTTCCAAAGAGGATGAGGTCTGCTCCTACAAACAGGTTTTTCCCAAAGCCTTCATTTATGTGGAAGTTTGTGGACTGGTGTTGCCGGCAATGCTGTGCATCGTGTGCATGACAGGACGGGTGTTATGGATCGCGCGCAAACAGCTGCAGGACATCTGTAAACTCCACCGTGCCGTAGATCGCTTACAAACATCAGACCAAGAGCAGCAGCTGAATCTGCGATACGCCAAATGTGTGGCCGCCGTGTCGCTTACGTTTTTGGTGTGTTGGGTGCCGTATATCATCTACCAGCTGATGTCAGTGACGGCTCTGCAGAGCGGCGTCAGCTTGCCCAGCTCCTCTTTATATATCATCATGTCCTGCACGGGGATCGGGAGCATGGCAGTCATCCCGTTGATCTTGGGACTAGCCAACAAGCAGTACACGGAGCCCATCAGAAGAGTGATGCTGAAACTGAGGAACCGCTGGAGAGGAGGACATAGTGATAGAGATATTACAATTTGA

Function

symbol description
gpbar1 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GPBAR1 (G protein-coupled bile acid receptor 1).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-120315-1 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GPBAR1 (G protein-coupled bile acid receptor 1).

Ensembl:

ensembl_id ENSDARG00000023302

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073606 False 1408 mRNA 0.48 3 47961482 47970760
TCONS_00073607 False 601 mRNA 0.48 2 47961723 47967510
TCONS_00073608 True 1920 mRNA 0.42 2 47966167 47970760

Neighbor

gene id symbol gene type direction distance location
XLOC_037417 NA coding upstream 638518 46854545 ~ 47322964 (+)
XLOC_037416 NA coding upstream 1121093 46838646 ~ 46840389 (+)
XLOC_037415 igfbp2b coding upstream 1161862 46745348 ~ 46799620 (+)
XLOC_037414 slc4a3 coding upstream 1276943 46644633 ~ 46684539 (+)
XLOC_037413 NA coding upstream 1345449 46482929 ~ 46616033 (+)
XLOC_037419 zgc:92380 coding downstream 36321 48007081 ~ 48039964 (+)
XLOC_037420 cxcr1 coding downstream 114279 48085039 ~ 48091741 (+)
XLOC_037421 cxcr2 coding downstream 137414 48108174 ~ 48109197 (+)
XLOC_037422 mettl5 coding downstream 152242 48123002 ~ 48135809 (+)
XLOC_037423 ccdc173 coding downstream 248351 48219111 ~ 48231775 (+)
XLOC_037412 NA non-coding upstream 1530186 46415158 ~ 46431296 (+)
XLOC_037411 NA non-coding upstream 1566078 46378709 ~ 46395404 (+)
XLOC_037425 NA non-coding downstream 410095 48380855 ~ 48381572 (+)
XLOC_037427 BX927361.2 non-coding downstream 712015 48682775 ~ 48687885 (+)
XLOC_037428 NA non-coding downstream 722672 48693432 ~ 48817119 (+)
XLOC_037430 NA non-coding downstream 874818 48845578 ~ 48858403 (+)
XLOC_037431 NA non-coding downstream 899136 48869896 ~ 48877349 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_15625341_15626360 GPBAR1 coding CI01000009 null 15625159 ~ 15626403 (+)