LOC110502740 (LOC106613508)


Basic Information

Item Value
gene id LOC110502740
gene name LOC106613508
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 39847791 ~ 39850264 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580995.2
AAACACAACACATAATGTGCTGCCGCCACTGGGAGGGCGGACGGATGCAATgcagaacacacaccacaccacgcaCCAAACACATCGAGACAGAGCACAAGCTGTCTCCAGACGACAACAACAGAGAACGCAGCAGCCCCTGTAGTAACAGAAAGAAGAGATCCACCAGAAGAacccctctcactcctctcctctccctaggACCGCAGCTCTGAAATGGGCTGCTCCTCGGGACGCCAACCCCCGGCCCCGGTGCTTCAACCAGACCTGGACTGTGGCAGCAGCATACCTCCGGAGTTTCCCCATAGAGGGGACCTGGTCCAACCCCCAGAGTCTCTCTCCACACTAGAACGACTAGCCCAGGCCACTGGCGGCACGGAGAAGTCTTGGTACCGCTGTGTGTTCCCATTTGGGGTTATCTCCCTGGTGATTGGTGTGGCGGGGACAGGGGTCACCTTCATGTATAACACGCCAGACCTGCACCAGACCAAGGTGGTGTCCATGGTGTTGCTGGTGGTTGGGATGGTCATGCTGTTGATGGCGGCAGTCTGCTGGAGGGACCACAGGCTGaagagaaggaagaagaaggagggagggttCTTCTGCTCTGAACAGGGCACCTTGTGAGgtttggaggaggaagagagatgtatggaacagagacacagacagatgaaaggatggatggatggaaaggTTGAAAATCTGTGAGGTCCAAACCGATCAACCTGCCACATGCTTCAGCGAGACGCTAGATTTCAGGGTGGTGGAGAGGGTTGAGAGTTCCTATATCTTCTTTCTCTTGTTTGGAAATATAACCTCCTCCTTCTTTACTTTTTTACCAGCCCCCATGTCTCTGAGGAGGTTTACTTTGTTTTTCActgtgtggaggagggagggcggTGTTTTCAGGGTTTCAAGTTCAGAGAGTTCTGTCAACGGTTAACCGTAGACCCTGATAACCTACTGTAGCTGTAAGATGTCCCATCAGAACGATGAAATCAGACTTTGGATGTGTaccaaatgacaccatattccctacatagtgtataCCCAATTCCCTACACAATGTGTATAGTGTAGGGAATTGGATGCCATTTTGGCCCAGCATTTGTGTCCACACTTTTCATTCATAGTGATTTACACATTTCTGCTTTCCCCTTCAGTTGGCTTCGCAGTTTCCTAAAAATGAGGACATCACTGGATCTGCCACAGAATGGGCTGAGCTGTTAAATTTTTACCAGTGGTTCTTTTTGCTGCCGTGTCAGTAATAAATTGTGATGAATTGA
>TU2133104
CGCCACTGGGAGGGCGGACGGATGCAATgcagaacacacaccacaccacgcaCCAAACACATCGAGACAGAGCACAAGCTGTCTCCAGACGACAACAACAGAGAACGCAGCAGCCCCTGTAGTAACAGAAAGAAGAGATCCACCAGAAGAacccctctcactcctctcctctccctaggACCGCAGCTCTGAAATGGGCTGCTCCTCGGGACGCCAACCCCCGGCCCCGGTGCTTCAACCAGACCTGGACTGTGGCAGCAGCATACCTCCGGAGTTTCCCCATAGAGGGGACCTGGTCCAACCCCCAGAGTCTCTCTCCACACTAGAACGACTAGCCCAGGCCACTGGCGGCACGGAGAAGTCTTGGTACCGCTGTGTGTTCCCATTTGGGGTTATCTCCCTGGTGATTGGTGTGGCGGGGACAGGGGTCACCTTCATGTATAACACGCCAGACCTGCACCAGACCAAGGTGGTGTCCATGGTGTTGCTGGTGGTTGGGATGGTCATGCTGTTGATGGCGGCAGTCTGCTGGAGGGACCACAGGCTGaagagaaggaagaagaaggagggagggttCTTCTGCTCTGAACAGGGCACCTTGTGAGgtttggaggaggaagagagatgtatggaacagagacacagacagatgaaaggatggatggatggaaaggTTGAAAATCTGTGAGGTCCAAACCGATCAACCTGCCACATGCTTCAGCGAGACGCTAGATTTCAGGGTGGTGGAGAGGGTTGAGAGTTCCTATATCTTCTTTCTCTTGTTTGGAAATATAACCTCCTCCTTCTTTACTTTTTTACCAGCCCCCATGTCTCTGAGGAGGTTTACTTTGTTTTTCActgtgtggaggagggagggcggTGTTTTCAGGGTTTCAAGTTCAGAGAGTTCTGTCAACGGTTAACCGTAGACCCTGATAACCTACTGTAGCTGTAAGATGTCCCATCAGAACGATGAAATCAGACTTTGGATGTGTaccaaatgacaccatattccctacatagtgtataCCCAATTCCCTACACAATGTGTATAGTGTAGGGAATTGGATGCCATTTTGGCCCAGCATTTGTGTCCACACTTTTCATTCATAGTGATTTACACATTTCTGCTTTCCCCTTCAGTTGGCTTCGCAGTTTCCTAAAAATGAGGACATCACTGGATCTGCCACAGAATGGGCTGAGCTGTTAAATTTTTACCAGTGGTTCTTTTTGCTGCCGTGTCAGTAATAAATTGTGATGAATTGACTTGCGTTtgtgtgtaaccgatgtgaagtgaaatggctagctagttagcggtggtgcgcgctaatagcgtttcaatcggtgacttcacttgctcggagaccttgaagtagtggttccccttgctctgcaagggccgtggcttttgtggagcgatgggtaacgatgcttcctgggtgtcagttgtctatgtgtgcagagggtccctggttcgaatccaggttgGGGTGAGGGGACGGATGGAAGTTAAACTGTTACATGTGCACCTCGAAGTGGTATGAATTTATAGTTGAAGGTTTCAGATAATGACATCACCCTGCGACAAGACTGCTGTAAGTTTGTCAACTTTGCATTCCTCTGTATGATATTACATGTATGTTTGGTGCGCTCTTAGATATGTAGAGGTTTATGGACTGATACGTCATTTGAATGGCATTCATATCACAAATCACATATCACTACCTGACCTGGGTCAAATATAATATGTCAAATACAAGCTGCGCTTGATTTAGTATTGTCACATTCGTCGTAATAATggtcggaccaaaacgcagtgcGATATGAGTTCCACATACTTTATTATTAGTGAAACTTAACTAAACAATAAAGCACAAACTGTGACTACAGAGGTGCAATGTGCACTAACtccaaacaatatcccataacacaCAGGTGGAAAAATACTACTTaactatgatccccaattagagacaatgatagCTTGGGAAttcctctaattgggaatcataccaaaacaccaacatagaaaaaacaaactagaaccccacatagaaaatataaactagactaaacccctagtcacgccctgacctactctaccatagaaaataaaggctttctacggtcaggatgtgacagaacccccccacccaaaggtgcggactccga

Function

NR:

description
transmembrane protein 100-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580995.2 False 1289 mRNA 0.50 2 39847791 39849358
TU2133104 True 2172 TUCP 0.47 2 39847814 39850264
Loading

Neighbor

gene id symbol gene type direction distance location
pbld LOC106612403 coding upstream 70161 39773339 ~ 39777630 (+)
rufy2 rufy2 coding upstream 85255 39745766 ~ 39762702 (+)
tspan15 LOC106612421 coding upstream 133594 39669158 ~ 39714197 (+)
hk1 LOC106612430 coding upstream 185315 39621040 ~ 39662476 (+)
hkdc1 LOC106612435 coding upstream 240292 39586539 ~ 39607499 (+)
LOC110502741 pgs1 coding downstream 109807 39959165 ~ 39979754 (+)
timp2a LOC106612362 coding downstream 223059 40072417 ~ 40086406 (+)
arl3b arl3 coding downstream 252909 40102267 ~ 40124134 (+)
rnf157 LOC106612253 coding downstream 347053 40196411 ~ 40231649 (+)
lrrc59 LOC106612247 coding downstream 395868 40245226 ~ 40251129 (+)
G1864234 NA non-coding upstream 62807 39778491 ~ 39784984 (+)
G1864222 NA non-coding upstream 123165 39724423 ~ 39724626 (+)
G1863942 NA non-coding upstream 180966 39666617 ~ 39666825 (+)
G1863932 NA non-coding upstream 205168 39640828 ~ 39642623 (+)
G1864299 NA non-coding downstream 9699 39859057 ~ 39860842 (+)
G1864345 NA non-coding downstream 59604 39908962 ~ 39925991 (+)
G1864421 NA non-coding downstream 169619 40018977 ~ 40036224 (+)
G1864438 NA non-coding downstream 192914 40042272 ~ 40042520 (+)
G1864444 NA non-coding downstream 203826 40053184 ~ 40053543 (+)
G1863919 NA other upstream 234161 39613004 ~ 39613630 (+)
LOC110502720 mpc1 other upstream 389411 39449355 ~ 39458454 (+)
LOC110502696 LOC106613523 other upstream 1801956 38038007 ~ 38067483 (+)
G1860679 NA other upstream 3123282 36724072 ~ 36724509 (+)
LOC110503110 LOC106612973 other upstream 3457911 36264498 ~ 36391057 (+)
G1864291 NA other downstream 1298 39850656 ~ 39853367 (+)
G1864542 NA other downstream 341676 40191034 ~ 40191431 (+)
LOC110502758 LOC106604997 other downstream 491291 40290482 ~ 40342112 (+)
G1864605 NA other downstream 521775 40371133 ~ 40376212 (+)
G1864727 LOC106612143 other downstream 722534 40571892 ~ 40580884 (+)

Expression

LOC110502740(LOC106613508) Expression in all Baseline Samples

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LOC110502740(LOC106613508) Expression in each Bioproject

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LOC110502740(LOC106613508) Expression in each Sample
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Co-expression Network