XLOC_037419 (zgc:92380)


Basic Information

Item Value
gene id XLOC_037419
gene name zgc:92380
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 48007081 ~ 48039964 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073610
ACACAACCTGCTGCAGgtaaaccaacacacacaccgcgcctcgcaaacacacacactctctccaaACTACACCATGTCATTCAGAAGCCCCTCCAGGAGTTACTCAAGCTCCAGTCTGACGGGCGGGATTGGATCCAGGGGCAATTTATTCGGAGCCATTTCTGCATCCGCTATTGGGAATCTGGCAAATACTCTGCGTCCGCAAGTGCAGATCAACAGCAATACTTTCGCAGGAGCTGATGACAAAGAGACCATGAAGGGTCTGAATGACCGTCTGGCCGGGTATTTGTCAAAAGTGCGGCTTCTAGAGGAGTCCAACAATAATCTGGAGGAGCAAATCAAAGAGGCTCTGCTGAGGAAAGGAGCCGATAGCGGCAGAGACTGGAGCGCCTATGAGAAGACCATTGCTGATCTGAGAAACCAGATCCAGGAAATGACTATGGACAACGCCAGACTGTTTCTACAGATAGACAATGCAAGACTGGCCGCTGACGACTTCAAAGTCAAGTTTGAGTCGGAGCAGGCCATGCGGCAAGGGGTGGAGCAAGATTTGGCACGTCTCCGCAAGATGTTGGACGACACTTACATGGGCCGCATGCAGCTGGAGGGCCAGATTGAGTCTATGAGAGAAGAGCTGGCCTTCCTGAAGAAGAGCCACGAGGAGGATGTGGCCAACCTGATGAGCCAGATCAACGACTCTCAAGTCAATGTGCAGATGGAGAATAAAAACACTGCAGACCTCAATGATGCCATTAATAACATCCGCCAGCAGTATGAGCGAGCCGCCCAGAAGAGCCGCGAGGACACTGAAGCCTGGTATAAAAACAAATTTGACAACATCACGGCTGAAGTGACTCAGAACACAGAAGCTCTGCAAGCCGGAAAGTCAGAGCTGAACGAACTACGCAGGCAGAAACAATCTCTAGAAATTGACCTGCAGGCTCTGCACAACATGATTCGATCGCTGGAGAATTCTCTGCATGAAACGGAGGCACGTTATGGTCAGGAGGTGAGCGGACACAACTCTCGAATCATGCAGCTGGAGGCCGAGCTGGGACAGCTGAGAGCGCAGGTGGAGCAGCAGGCGGCTGATTATGAGGCCCTGCTCAACCTCAAGTCCAAACTGGAAGCTGAGATTGACACTTATCATCGTCTCCTGGAGGGAGTGGTTGATGACAAGGGGGATAAAGACAGAGAGGAATTTTCTTTAGAGCAGGCCTTATATGCAGCTCCACCTCCTCTTCCTACAACCGTAGGTCTTAAGAAAGCCATCATCATCACCCAAGAGATAGTGGACGGAGAGGTGGTCTCTCAGAGCGAACTGGAGCAGAATCCCGCAAACCACATCGAGCAGGACGTCTTTGAGGATGAAGAGGAGTTAACAGAACAACTGGAGTTAGCGGAGGAAGACGAGGAGTTAGCCAAACATCAGGAAGCAGAGGAACCAGAGGTGATGCTGGAGGTGGAGGAGACAGTAATAGTGGAGGTAGTGGAGAAAGAGAAAGCACCTGTTGAAGATGATGAAGAAAAAGCAGAAGAGGTTTCACACGATGCTGTTGTGGAGCAGAAGGATGAGTAGCTTTTGACTGCTACGTCGTAAATCTTGCTGCCTCGGTTGTTCTTCATCTCTGTCTTCTGTCCCTTAATACTGTTCAGGGTTTCGTTATGAAGAGCAAATCTCCAGTTCCACATTAAAAGAATTACAAGCCTCA
>TCONS_00073609
ACACAACCTGCTGCAGgtaaaccaacacacacaccgcgcctcgcaaacacacacactctctccaaACTACACCATGTCATTCAGAAGCCCCTCCAGGAGTTACTCAAGCTCCAGTCTGACGGGCGGGATTGGATCCAGGGGCAATTTATTCGGAGCCATTTCTGCATCCGCTATTGGGAATCTGGCAAATACTCTGCGTCCGCAAGTGCAGATCAACAGCAATACTTTCGCAGGAGCTGATGACAAAGAGACCATGAAGGGTCTGAATGACCGTCTGGCCGGGTATTTGTCAAAAGTGCGGCTTCTAGAGGAGTCCAACAATAATCTGGAGGAGCAAATCAAAGAGGCTCTGCTGAGGAAAGGAGCCGATAGCGGCAGAGACTGGAGCGCCTATGAGAAGACCATTGCTGATCTGAGAAACCAGATCCAGGAAATGACTATGGACAACGCCAGACTGTTTCTACAGATAGACAATGCAAGACTGGCCGCTGACGACTTCAAAGTCAAGTTTGAGTCGGAGCAGGCCATGCGGCAAGGGGTGGAGCAAGATTTGGCACGTCTCCGCAAGATGTTGGACGACACTTACATGGGCCGCATGCAGCTGGAGGGCCAGATTGAGTCTATGAGAGAAGAGCTGGCCTTCCTGAAGAAGAGCCACGAGGAGGATGTGGCCAACCTGATGAGCCAGATCAACGACTCTCAAGTCAATGTGCAGATGGAGAATAAAAACACTGCAGACCTCAATGATGCCATTAATAACATCCGCCAGCAGTATGAGCGAGCCGCCCAGAAGAGCCGCGAGGACACTGAAGCCTGGTATAAAAACAAATTTGACAACATCACGGCTGAAGTGACTCAGAACACAGAAGCTCTGCAAGCCGGAAAGTCAGAGCTGAACGAACTACGCAGGCAGAAACAATCTCTAGAAATTGACCTGCAGGCTCTGCACAACATGATTCGATCGCTGGAGAATTCTCTGCATGAAACGGAGGCACGTTATGGTCAGGAGGTGAGCGGACACAACTCTCGAATCATGCAGCTGGAGGCCGAGCTGGGACAGCTGAGAGCGCAGGTGGAGCAGCAGGCGGCTGATTATGAGGCCCTGCTCAACCTCAAGTCCAAACTGGAAGCTGAGATTGACACTTATCATCGTCTCCTGGAGGGAGTGGTTGATGACAAGGGGGATAAAGACAGCTCCACCTCCTCTTCCTACAACCGTAGGTCTTAAGAAAGCCATCATCATCACCCAAGAGATAGTGGACGGAGAGGTGGTCTCTCAGAGCGAACTGGAGCAGAATCCCGCAAACCACATCGAGCAGGACGTCTTTGAGGATGAAGAGGAGTTAACAGAACAACTGGAGTTAGCGGAGGAAGACGAGGAGTTAGCCAAACATCAGGAAGCAGAGGAACCAGAGGTGATGCTGGAGGTGGAGGAGACAGTAATAGTGGAGGTAGTGGAGAAAGAGAAAGCACCTGTTGAAGATGATGAAGAAAAAGCAGAAGAGGTTTCACACGATGCTGTTGTGGAGCAGAAGGATGAGTAGCTTTTGACTGCTACGTCGTAAATCTTGCTGCCTCGGTTGTTCTTCATCTCTGTCTTCTGTCCCTTAATACTGTTCAGGGTTTCGTTATGAAGAGCAAATCTCCAGTTCCACATTAAAAGAATTACAAGCCTCA

Function

symbol description
zgc:92380 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in several structures, including digestive system; epidermis; hatching gland; polster; and sensory system.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-221 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in several structures, including digestive system; epidermis; hatching gland; polster; and sensory system.

Ensembl:

ensembl_id ENSDARG00000041339

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073610 False 1712 mRNA 0.50 8 48007081 48039964
TCONS_00073609 True 1677 mRNA 0.50 7 48007081 48039964

Neighbor

gene id symbol gene type direction distance location
XLOC_037418 gpbar1 coding upstream 36321 47961482 ~ 47970760 (+)
XLOC_037417 NA coding upstream 684117 46854545 ~ 47322964 (+)
XLOC_037416 NA coding upstream 1166692 46838646 ~ 46840389 (+)
XLOC_037415 igfbp2b coding upstream 1207461 46745348 ~ 46799620 (+)
XLOC_037414 slc4a3 coding upstream 1322542 46644633 ~ 46684539 (+)
XLOC_037420 cxcr1 coding downstream 45075 48085039 ~ 48091741 (+)
XLOC_037421 cxcr2 coding downstream 68210 48108174 ~ 48109197 (+)
XLOC_037422 mettl5 coding downstream 83038 48123002 ~ 48135809 (+)
XLOC_037423 ccdc173 coding downstream 179147 48219111 ~ 48231775 (+)
XLOC_037424 fastkd1 coding downstream 192607 48232571 ~ 48267646 (+)
XLOC_037413 NA non-coding upstream 1391048 46482929 ~ 46616033 (+)
XLOC_037412 NA non-coding upstream 1575785 46415158 ~ 46431296 (+)
XLOC_037411 NA non-coding upstream 1611677 46378709 ~ 46395404 (+)
XLOC_037425 NA non-coding downstream 340891 48380855 ~ 48381572 (+)
XLOC_037427 BX927361.2 non-coding downstream 642811 48682775 ~ 48687885 (+)
XLOC_037428 NA non-coding downstream 653468 48693432 ~ 48817119 (+)
XLOC_037430 NA non-coding downstream 805614 48845578 ~ 48858403 (+)
XLOC_037431 NA non-coding downstream 829932 48869896 ~ 48877349 (+)

Expression


Co-expression Network