LOC110502750 (LOC106612307)


Basic Information

Item Value
gene id LOC110502750
gene name LOC106612307
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 40155005 ~ 40177932 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581012.2
GTACATTTTTTCTCCCACTACTGTCTCGGAGCTACAGTGGACACGGTTGTCGGCAGGCTAATATTACAGCAACAAAGCGAACGGGATGCAGGGTAGGAAAACCGACTGACAATTGCATGAGTGAGGATACCAGGGAGAGGCTTTTTTTAACGGTATTTCTCCGGTATAGGCTGTAGAGCCTACATGTTTTATAAGAGACAAAAATAGAAGACAAAAGGACAAACGGGTCATATTTTGCTGCCTCGAAAAGTCGACTCGCTTTCAGTCTGCAACAATGGAATTAAGTTTTATATTGCCTGCTATTCTTTTCACGCTGTTCGCTATTATTCTGGTGACAGCATTGTTCAGCACCAACGATACTTCTACTGTCTCGTCCTCTGGCTCTGCTGCATCCAAAGCGGATCACTCAGGGGAGGGATCTTTGGCGCAGTCCGGGAGAGAGGATGTGAAAACGGGATTAGCTAAATCAGGACCGTCGGTAAATCTTACGGAGAAACAGGGGACAGCAGCAAGGCTAACCTTAACGGACAAATCGGAGGAGGACAGTAAATGTCGATCTGTCGGAAAAATAATGGATCCGATGGCAGCGGACAGAAGGACAGTTGAGGAGGAGGGGCTGCCCGCTGCAGAAGTTAGGACCCATGCTGCTCACGAGAAAAAGGTGAAATCCGGCATTATGTCTGGCCAACGGTACTCAACCTCAAACCCTGCCTCAGCACCAGTGGATATTCCAGGTAGAGACTTTGGTCACCTACAGTTCCCTGAGGGGGGGTCGTTACTGTGCCCTTTCTCCTACCGACAGACAGTGGGTGCCACAGAGAGCCCAGAGTACAGCAACGATATGGAGGTAGTGGAAGTGCCCCTGAAATACGTCCCTGGCATGCTGCGGACCAGCCAGATGGAGAAGATGATGACCaaagaggagctggaggaggaacagagGGTGCAACGGGAGCAGCTGGCAGCCATCTTCCAGCTGCTGAAGGAGAACCAGGAGACGTTTGGGGAGGTGTCAGAGGGAGACGTGGAGGAGCAGCTCAGACTCTACTCCATCTGATCCCCTACTCTACTCACACCCTACTACAACTGACTACAACATCTGAACCCCTACTCTACTCATTTCCTACATTAACTGACTACAGCATCTGAAACCCTACTCTACTCACACGCTACTACAACTGACTACAGCATCTGAAGCCTTACTCTACTCACACCCTACTACAACTGACTACAGCATCTGAAGCCCTACTCTACTCACACCCTACTAGTTTTCTGTACTAATTCTAACTCTACTTTCCCCAAACTCTACTCTGTTAATCCCACATGAAACTGACAATCAAGATTAAGGGGGCATTGTTTCAATGGTCCACTCTATTTTGAACCGCATACCCTTCTCTGAAGACTCTGAGGCGTTGAAATAACCAATAAGGTTTTGTATAGTTGGACCTGAGTCATTTGATTGGTCTGATACAATCTAAGACATTGGTATTCAAAGTCGGGGTCGCGACCAGGGGAACTGCAGTGGGGTCGCCAACatgatttattttttttgtatagtTTTTCGTAACAAAAAAATCaagattattgtatgggacaatatacAATATAACGTTTTTGAGAAAGATCAtttgaaaaatacaattttattgagtaaatgtatttattggtttcttCATTTTGATAAGAGATGAAAATATAATTAATTGAAGTTTTtttgttgatgtaaaaatctAAATTTACAGATTTGAAGGTGttgtcattagatttggggtggagTCGCAAGATATTATTGGGAGAAAAATGGGGTCCCGACAGAGTTTGAATACCACTGATCTAAGAGGTTCTTATACCGTACACACCCATGAAAGCCAATAGTTTCGGCAAGCCTCATGGTGAAACAACATACACTTATCTGAATGCACCTTTCTCCTTTCACCTATTCCCTACCTTTCCTCGCCCATATCCTTCTCTCACCCATCGCTATCACTCCTACCGTTTCCAATGCAGCAGATGTCCTTCTCTAGACAGCTCTGTGCAAGCAAACACAACATTGGCACCAACACAAACATGTACATTAGATACTCCTATGTACATTAGATACTGCTGTTTATTACTTCTTAATGGTACTTAATGGTTTAATACCATTCAAAACAATAAACACAGTGTATTTGATACAA
>XM_021581013.2
GTACATTTTTTCTCCCACTACTGTCTCGGAGCTACAGTGGACACGGTTGTCGGCAGGCTAATATTACAGCAACAAAGCGAACGGGATGCAGGGTAGGAAAACCGACTGACAATTGCATGAGTGAGGATACCAGGGAGAGGCTTTTTTTAACGGTATTTCTCCGGTATAGGCTGTAGAGCCTACATGTTTTATAAGAGACAAAAATAGAAGACAAAAGGACAAACGGGTCATATTTTGCTGCCTCGAAAAGTCGACTCGCTTTCAGTCTGCAACAATGGAATTAAGTTTTATATTGCCTGCTATTCTTTTCACGCTGTTCGCTATTATTCTGGTGACAGCATTGTTCAGCACCAACGATACTTCTACTGTCTCGTCCTCTGGCTCTGCTGCATCCAAAGCGGATCACTCAGGGGAGGGATCTTTGGCGCAGTCCGGGAGAGAGGATGTGAAAACGGGATTAGCTAAATCAGGACCGTCGGTAAATCTTACGGAGAAACAGGGGACAGCAGCAAGGCTAACCTTAACGGACAAATCGGAGGAGGACAGTAAATGTCGATCTGTCGGAAAAATAATGGATCCGATGGCAGCGGACAGAAGGACAGTTGAGGAGGAGGGGCTGCCCGCTGCAGAAGTTAGGACCCATGCTGCTCACGAGAAAAAGTCTGGCCAACGGTACTCAACCTCAAACCCTGCCTCAGCACCAGTGGATATTCCAGGTAGAGACTTTGGTCACCTACAGTTCCCTGAGGGGGGGTCGTTACTGTGCCCTTTCTCCTACCGACAGACAGTGGGTGCCACAGAGAGCCCAGAGTACAGCAACGATATGGAGGTAGTGGAAGTGCCCCTGAAATACGTCCCTGGCATGCTGCGGACCAGCCAGATGGAGAAGATGATGACCaaagaggagctggaggaggaacagagGGTGCAACGGGAGCAGCTGGCAGCCATCTTCCAGCTGCTGAAGGAGAACCAGGAGACGTTTGGGGAGGTGTCAGAGGGAGACGTGGAGGAGCAGCTCAGACTCTACTCCATCTGATCCCCTACTCTACTCACACCCTACTACAACTGACTACAACATCTGAACCCCTACTCTACTCATTTCCTACATTAACTGACTACAGCATCTGAAACCCTACTCTACTCACACGCTACTACAACTGACTACAGCATCTGAAGCCTTACTCTACTCACACCCTACTACAACTGACTACAGCATCTGAAGCCCTACTCTACTCACACCCTACTAGTTTTCTGTACTAATTCTAACTCTACTTTCCCCAAACTCTACTCTGTTAATCCCACATGAAACTGACAATCAAGATTAAGGGGGCATTGTTTCAATGGTCCACTCTATTTTGAACCGCATACCCTTCTCTGAAGACTCTGAGGCGTTGAAATAACCAATAAGGTTTTGTATAGTTGGACCTGAGTCATTTGATTGGTCTGATACAATCTAAGACATTGGTATTCAAAGTCGGGGTCGCGACCAGGGGAACTGCAGTGGGGTCGCCAACatgatttattttttttgtatagtTTTTCGTAACAAAAAAATCaagattattgtatgggacaatatacAATATAACGTTTTTGAGAAAGATCAtttgaaaaatacaattttattgagtaaatgtatttattggtttcttCATTTTGATAAGAGATGAAAATATAATTAATTGAAGTTTTtttgttgatgtaaaaatctAAATTTACAGATTTGAAGGTGttgtcattagatttggggtggagTCGCAAGATATTATTGGGAGAAAAATGGGGTCCCGACAGAGTTTGAATACCACTGATCTAAGAGGTTCTTATACCGTACACACCCATGAAAGCCAATAGTTTCGGCAAGCCTCATGGTGAAACAACATACACTTATCTGAATGCACCTTTCTCCTTTCACCTATTCCCTACCTTTCCTCGCCCATATCCTTCTCTCACCCATCGCTATCACTCCTACCGTTTCCAATGCAGCAGATGTCCTTCTCTAGACAGCTCTGTGCAAGCAAACACAACATTGGCACCAACACAAACATGTACATTAGATACTCCTATGTACATTAGATACTGCTGTTTATTACTTCTTAATGGTACTTAATGGTTTAATACCATTCAAAACAATAAACACAGTGTATTTGATACAA
>XR_002470363.2
GTACATTTTTTCTCCCACTACTGTCTCGGAGCTACAGTGGACACGGTTGTCGGCAGGCTAATATTACAGCAACAAAGCGAACGGGATGCAGGGTAGGAAAACCGACTGACAATTGCATGAGTGAGGATACCAGGGAGAGGCTTTTTTTAACGGTATTTCTCCGGTATAGGCTGTAGAGCCTACATGTTTTATAAGAGACAAAAATAGAAGACAAAAGGACAAACGGGTCATATTTTGCTGCCTCGAAAAGTCGACTCGCTTTCAGTCTGCAACAATGGAATTAAGTTTTATATTGCCTGCTATTCTTTTCACGCTGTTCGCTATTATTCTGGTGACAGCATTGTTCAGCACCAACGATACTTCTACTGTCTCGTCCTCTGGCTCTGCTGCATCCAAAGCGGATCACTCAGGGGAGGGATCTTTGGCGCAGTCCGGGAGAGAGGATGTGAAAACGGGATTAGCTAAATCAGGACCGTCGGTAAATCTTACGGAGAAACAGGGGACAGCAGCAAGGCTAACCTTAACGGACAAATCGGAGGAGGACAGTAAATGTCGATCTGTCGGAAAAATAATGGATCCGATGGCAGCGGACAGAAGGACAGTTGAGGAGGAGGGGCTGCCCGCTGCAGAAGTTAGGACCCATGCTGCTCACGAGAAAAAGGTGAAATCCGGCATTATGTCTGGCCAACGGTACTCAACCTCAAACCCTGCCTCAGCACCAGTGGATATTCCAGGTAGAGACTTTGGTCACCTACAGTTCCCTGAGGGGGGGTCGTTACTGTGCCCTTTCTCCTACCGACAGACAGTGGGTGCCACAGAGAGCCCAGAGTACAGCAACGATATGGAGGTAGTGGAAGTGCCCCTGAAATACGTCCCTGGCATGCTGCGGACCAGCCAGATGGAGAAGATGATGACCaaagaggagctggaggaggaacagagGGTAGAGTTCACCACTGACTTTACCTCTCTGTAAGTCCCtcggacagacaggcagacatgcagacagacaggggctGTAGTAAAAACATGGGTGCAACGGGAGCAGCTGGCAGCCATCTTCCAGCTGCTGAAGGAGAACCAGGAGACGTTTGGGGAGGTGTCAGAGGGAGACGTGGAGGAGCAGCTCAGACTCTACTCCATCTGATCCCCTACTCTACTCACACCCTACTACAACTGACTACAACATCTGAACCCCTACTCTACTCATTTCCTACATTAACTGACTACAGCATCTGAAACCCTACTCTACTCACACGCTACTACAACTGACTACAGCATCTGAAGCCTTACTCTACTCACACCCTACTACAACTGACTACAGCATCTGAAGCCCTACTCTACTCACACCCTACTAGTTTTCTGTACTAATTCTAACTCTACTTTCCCCAAACTCTACTCTGTTAATCCCACATGAAACTGACAATCAAGATTAAGGGGGCATTGTTTCAATGGTCCACTCTATTTTGAACCGCATACCCTTCTCTGAAGACTCTGAGGCGTTGAAATAACCAATAAGGTTTTGTATAGTTGGACCTGAGTCATTTGATTGGTCTGATACAATCTAAGACATTGGTATTCAAAGTCGGGGTCGCGACCAGGGGAACTGCAGTGGGGTCGCCAACatgatttattttttttgtatagtTTTTCGTAACAAAAAAATCaagattattgtatgggacaatatacAATATAACGTTTTTGAGAAAGATCAtttgaaaaatacaattttattgagtaaatgtatttattggtttcttCATTTTGATAAGAGATGAAAATATAATTAATTGAAGTTTTtttgttgatgtaaaaatctAAATTTACAGATTTGAAGGTGttgtcattagatttggggtggagTCGCAAGATATTATTGGGAGAAAAATGGGGTCCCGACAGAGTTTGAATACCACTGATCTAAGAGGTTCTTATACCGTACACACCCATGAAAGCCAATAGTTTCGGCAAGCCTCATGGTGAAACAACATACACTTATCTGAATGCACCTTTCTCCTTTCACCTATTCCCTACCTTTCCTCGCCCATATCCTTCTCTCACCCATCGCTATCACTCCTACCGTTTCCAATGCAGCAGATGTCCTTCTCTAGACAGCTCTGTGCAAGCAAACACAACATTGGCACCAACACAAACATGTACATTAGATACTCCTATGTACATTAGATACTGCTGTTTATTACTTCTTAATGGTACTTAATGGTTTAATACCATTCAAAACAATAAACACAGTGTATTTGATACAA
>XR_002470364.2
AGTACATTTTTTCTCCCACTACTGTCTCGGAGCTACAGTGGACACGGTTGTCGGCAGGCTAATATTACAGCAACAAAGCGAACGGGATGCAGGGTAGGAAAACCGACTGACAATTGCATGAGTGAGGATACCAGGGAGAGGCTTTTTTTAACGGTATTTCTCCGGTATAGGCTGTAGAGCCTACATGTTTTATAAGAGACAAAAATAGAAGACAAAAGGACAAACGGGTCATATTTTGCTGCCTCGAAAAGTCGACTCGCTTTCAGTCTGCAACAATGGAATTAAGTTTTATATTGCCTGCTATTCTTTTCACGCTGTTCGCTATTATTCTGGTGACAGCATTGTTCAGCACCAACGATACTTCTACTGTCTCGTCCTCTGGCTCTGCTGCATCCAAAGCGGATCACTCAGGGGAGGGATCTTTGGCGCAGTCCGGGAGAGAGGATGTGAAAACGGGATTAGCTAAATCAGGACCGTCGGTAAATCTTACGGAGAAACAGGGGACAGCAGCAAGGCTAACCTTAACGGACAAATCGGAGGAGGACAGTAAATGTCGATCTGTCGGAAAAATAATGGATCCGATGGCAGCGGACAGAAGGACAGTTGAGGAGGAGGGGCTGCCCGCTGCAGAAGTTAGGACCCATGCTGCTCACGAGAAAAAGTCTGGCCAACGGTACTCAACCTCAAACCCTGCCTCAGCACCAGTGGATATTCCAGGTAGAGACTTTGGTCACCTACAGTTCCCTGAGGGGGGGTCGTTACTGTGCCCTTTCTCCTACCGACAGACAGTGGGTGCCACAGAGAGCCCAGAGTACAGCAACGATATGGAGGTAGTGGAAGTGCCCCTGAAATACGTCCCTGGCATGCTGCGGACCAGCCAGATGGAGAAGATGATGACCaaagaggagctggaggaggaacagagGGTAGAGTTCACCACTGACTTTACCTCTCTGTAAGTCCCtcggacagacaggcagacatgcagacagacaggggctGTAGTAAAAACATGGGTGCAACGGGAGCAGCTGGCAGCCATCTTCCAGCTGCTGAAGGAGAACCAGGAGACGTTTGGGGAGGTGTCAGAGGGAGACGTGGAGGAGCAGCTCAGACTCTACTCCATCTGATCCCCTACTCTACTCACACCCTACTACAACTGACTACAACATCTGAACCCCTACTCTACTCATTTCCTACATTAACTGACTACAGCATCTGAAACCCTACTCTACTCACACGCTACTACAACTGACTACAGCATCTGAAGCCTTACTCTACTCACACCCTACTACAACTGACTACAGCATCTGAAGCCCTACTCTACTCACACCCTACTAGTTTTCTGTACTAATTCTAACTCTACTTTCCCCAAACTCTACTCTGTTAATCCCACATGAAACTGACAATCAAGATTAAGGGGGCATTGTTTCAATGGTCCACTCTATTTTGAACCGCATACCCTTCTCTGAAGACTCTGAGGCGTTGAAATAACCAATAAGGTTTTGTATAGTTGGACCTGAGTCATTTGATTGGTCTGATACAATCTAAGACATTGGTATTCAAAGTCGGGGTCGCGACCAGGGGAACTGCAGTGGGGTCGCCAACatgatttattttttttgtatagtTTTTCGTAACAAAAAAATCaagattattgtatgggacaatatacAATATAACGTTTTTGAGAAAGATCAtttgaaaaatacaattttattgagtaaatgtatttattggtttcttCATTTTGATAAGAGATGAAAATATAATTAATTGAAGTTTTtttgttgatgtaaaaatctAAATTTACAGATTTGAAGGTGttgtcattagatttggggtggagTCGCAAGATATTATTGGGAGAAAAATGGGGTCCCGACAGAGTTTGAATACCACTGATCTAAGAGGTTCTTATACCGTACACACCCATGAAAGCCAATAGTTTCGGCAAGCCTCATGGTGAAACAACATACACTTATCTGAATGCACCTTTCTCCTTTCACCTATTCCCTACCTTTCCTCGCCCATATCCTTCTCTCACCCATCGCTATCACTCCTACCGTTTCCAATGCAGCAGATGTCCTTCTCTAGACAGCTCTGTGCAAGCAAACACAACATTGGCACCAACACAAACATGTACATTAGATACTCCTATGTACATTAGATACTGCTGTTTATTACTTCTTAATGGTACTTAATGGTTTAATACCATTCAAAACAATAAACACAGTGTATTTGATACAA

Function

NR:

description
uncharacterized protein LOC110502750 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581012.2 False 2177 mRNA 0.44 4 40155005 40177931
XM_021581013.2 False 2159 mRNA 0.44 4 40155005 40177931
XR_002470363.2 False 2267 mRNA 0.45 5 40155005 40177931
XR_002470364.2 True 2250 mRNA 0.44 5 40155005 40177932

Neighbor

gene id symbol gene type direction distance location
trim8b trim8 coding downstream 11830 40135822 ~ 40143175 (-)
sfxn2 sfxn2 coding downstream 52781 40096096 ~ 40102224 (-)
LOC110502744 LOC106612365 coding downstream 82497 40008383 ~ 40072508 (-)
LOC110502743 LOC106612385 coding downstream 196908 39947484 ~ 39958097 (-)
dna2 dna2 coding downstream 343220 39777382 ~ 39811785 (-)
srsf2a LOC106612293 coding upstream 1877 40179809 ~ 40185223 (-)
nat9 nat9 coding upstream 73299 40251231 ~ 40254320 (-)
eme1 eme1 coding upstream 92486 40270418 ~ 40290299 (-)
LOC110502760 LOC106612187 coding upstream 210214 40388146 ~ 40462847 (-)
rab40b LOC106612180 coding upstream 297617 40475549 ~ 40529717 (-)
G1865216 NA non-coding downstream 90091 40064703 ~ 40064914 (-)
G1865214 NA non-coding downstream 93549 40060970 ~ 40061456 (-)
G1865210 NA non-coding downstream 99585 40055191 ~ 40055420 (-)
G1865206 NA non-coding downstream 105961 40048272 ~ 40049044 (-)
G1865202 NA non-coding downstream 111963 40042803 ~ 40043042 (-)
G1865291 LOC106612253 non-coding upstream 27183 40205115 ~ 40207803 (-)
G1865314 NA non-coding upstream 53972 40231904 ~ 40232971 (-)
G1865312 NA non-coding upstream 55142 40233074 ~ 40234410 (-)
G1865323 NA non-coding upstream 78683 40256615 ~ 40256927 (-)
G1865326 NA non-coding upstream 83130 40261062 ~ 40266358 (-)
G1864033 NA other downstream 701590 39449397 ~ 39453415 (-)
G1862272 NA other downstream 1997796 38156749 ~ 38157209 (-)
G1861368 NA other downstream 2819591 37335027 ~ 37335414 (-)
G1860462 NA other downstream 3703546 36448831 ~ 36451459 (-)
LOC110502661 golga7b other downstream 4195800 35954220 ~ 36014458 (-)
G1868010 NA other upstream 2737474 42915406 ~ 42978144 (-)
G1868940 LOC106611807 other upstream 3308936 43486868 ~ 43501433 (-)
G1872165 NA other upstream 5849988 46027920 ~ 46029807 (-)
G1872556 NA other upstream 6619303 46797235 ~ 46797650 (-)

Expression


Co-expression Network